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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018738 ID=TCONS_00018738|Name=TCONS_00018738|organism=Clytia hemisphaerica|type=transcript|length=1375bp
TCCGTTGCTGTCAGTGGTGAAACTTACGCCGAATTCCGCGaagctgattg
gttaaaaaagcgttgttctaCTGCATGGATATGTATTGTGTACGCTCTAA
TCATCGGCATGGAATATTCCTGCATTTCAACATCACTTTTATATTACCTT
CAAGATGatttgaaattacaaaatcCTAAGCTTTACTACAGTCTCATAAT
GTGTTTGTCAGCTCTGTCTGCATCAGTTAGCGCTCTCATCAGTGGCAAAC
TATTCGATAAAACACGACGATTAAAGCTGTTTATGTTGGTTTTCACTTTA
CTGACGTTAGTTGGTAACCTTCTTTATACCATGCATGTTTCAGTTTGGTT
TTTGGTAGTGGGAAGATTTTTATGTGGATTGTGTGATGCAGCACAGCCAA
TTATATCTGGTGAATTTTCGCGATTATACGAAGGACCAGAACTAACAAAA
AAGCTATCACAATACCAAGCACTTTATGCGATTGGATTCCTTTCTGGACC
TGCAGCTCCAGTCATGTTTGGTAAAATTGATATCAAAATTTGTAGTTGGT
GGACTTTGAACCAAAATAACTTTGTTGGTATATTTATGGCACTCTTAACC
TTGGTAATACTACTTGCAATACTACTGGGTGTTCATGATCTAAGCATTCA
AGATGTTGCAGCGAATACTCAAAGTGAAATGCCAATAAATACGTCACAAC
CTCCGAGCAACAGTAGTTTTAACCTAAAAAGCATTTTAAAGAATCTAGAT
TTGATGTTGTTAATTCTTAGCTCATCGTTCACCAATGCACTTGCCGGTAT
GTTGGAATTGATGATCAATCTGACTGCCAGCGATTGGTTCAAATGGTCCT
TGACTCGTCTTGGCATTGTCACTTGTATTTGTGTGGTGATCTATACAGTT
CTGATGTTAACTGTAGCTCATAAAGTTATCCAACGCTACTTGAAGTTTTT
GTTCCTATTATGTTTTCCAATACACGCGTTATGTGTAATCATTCTAATGC
TGCCAAAGATAACCAATATTGATCACCTTTACTCCCAGGAAGCACATCTT
GCTTTATGCATTCTCACCAACACTTTTACTGGATTAACTATATCTGTTTT
AGCCAGGaatctattatttcaaatggtTCCAGCAGGCAGTGCTAGTTTTT
CAGATGGTTTTAGAAGCACAACCCAACGTATTATGGGTATTGTAACATTT
TTCTTGGCAGCATGGGCTTATGATACCAGTGTGGTTACATCACCTATATT
GTCATTAGTTTTGTTAATGATTGCAATTATCCTTGCAACACGACGGAAGT
TTCGACCAGAAGTTTGTGGCGTTAACCAAGAACATCGACTGTTGCTGgat
gaaaatgataatttaTAGATCGACT Run BLAST on NCBI protein sequence of TCONS_00018738-protein >TCONS_00018738-protein ID=TCONS_00018738-protein|Name=TCONS_00018738-protein|organism=Clytia hemisphaerica|type=polypeptide|length=455bp
SVAVSGETYAEFREADWLKKRCSTAWICIVYALIIGMEYSCISTSLLYYL
QDDLKLQNPKLYYSLIMCLSALSASVSALISGKLFDKTRRLKLFMLVFTL
LTLVGNLLYTMHVSVWFLVVGRFLCGLCDAAQPIISGEFSRLYEGPELTK
KLSQYQALYAIGFLSGPAAPVMFGKIDIKICSWWTLNQNNFVGIFMALLT
LVILLAILLGVHDLSIQDVAANTQSEMPINTSQPPSNSSFNLKSILKNLD
LMLLILSSSFTNALAGMLELMINLTASDWFKWSLTRLGIVTCICVVIYTV
LMLTVAHKVIQRYLKFLFLLCFPIHALCVIILMLPKITNIDHLYSQEAHL
ALCILTNTFTGLTISVLARNLLFQMVPAGSASFSDGFRSTTQRIMGIVTF
FLAAWAYDTSVVTSPILSLVLLMIAIILATRRKFRPEVCGVNQEHRLLLD
ENDNL Run BLAST on NCBI transcript from alignment at sc0000305:75307..78073- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018738 ID=TCONS_00018738|Name=TCONS_00018738|organism=Clytia hemisphaerica|type=transcript|length=2767bp|location=Sequence derived from alignment at sc0000305:75307..78073- (Clytia hemisphaerica)
TCCGTTGCTGTCAGTGGTGAAACTTACGCCGAATTCCGCGAAGCTGATTG
GTTAAAAAAGCGTTGTTCTACTGCATGGATATGTATTGTGTACGCTCTAA
TCATCGGCATGGAATATTCCTGCATTTCAACATCACTTTTATATTACCTT
CAAGATGATTTGAAATTACAAAATCCTAAGCTTTACTACAGTCTCATAAT
GTGTTTGTCAGCTCTGTCTGCATCAGTTAGCGCTCTCATCAGTGGCAAAC
TATTCGATAAAACACGACGATTAAAGCTGTTTATGTTGGTTTTCACTTTA
CTGACGTTAGTTGGTAACCTTCTTTATACCATGCATGTTTCAGTTTGGTT
TTTGGTAGTGGGAAGATTTTTATGTGGATTGTGTGATGCAGCACAGCCAA
TTATATCTGGTAAGTTGTTTTAACATTTTCACAGGTCTCTTTCAATTGAC
TTCCAAAGCTGTACTCCCATCGAGAGATACTTATTCAAATGCTAAGAAAC
TGCTTCTTTATCCTAAAAAGAGAATTACATTTTTTCCAAGAAGTTGCCTT
CTTTCCCAGCTGGCACACAGCGTTGTTTTAACGTTTTTATAACGTTATAT
GAACGTTGTGAATATTAGATAAACGTTGAAAAGACGTATCGTGTCAGCTG
GGTAGCACACTCACTTCTCACAGACCCACTTGAAACCCTCCCACTAGAAA
GATTGGTAAGTTGTTTCAGCATTTTTACAGGTTTCTTTTCTTGATCTCCA
AAGCTGTACTGGCCAAAAATAAAGCGACTAAAAGAGGCGTAGCATTTGGT
TGCGCTGCACCGATTGGAGAAAATTTAGATTTTGATCCCCTGAGCTTTTT
CACACCCCTGTGTCTCACAGACCAGCTGGGACCTCAGCCCCACTGGAAAA
TTGGGCAAAAAATCTCGTCCCTGGTGGGAAAGTACCCTAATATTTTCCAC
TGGGAAATTGACTTTGATCTCAACCCCTTCGAAATTCAATGTTTAAAAAT
TGTGCTCCAAAACCATCCCCACTGGATTTTTAACCTTGGAACAATAGAAT
GGGATTTGAATAGGAATTTTTATCCCCACTAAGGAAAAAATTCCACCGGG
GCCGTGAGACAGTGGTGTTTTTTGAACCCTTAATCATTACCCCCTTCTCA
TCCCGCTGGAGCAGAACCAGTTTATATCCTAGCATGTATTACCCGAACTC
CTATGAGAAATACTCATTCAAATGCTAAAAATATACTCCTTTATCCTAAA
AAGAGAATTAAATATTTTTCCAAAAAGTGCCCTTCTTTCCCAGCTGGCAC
ACAACGTTGTTTCGACGTTTATCTCACGTTATATGGACGTTGTGAACATT
AGATAAACGTTAAAAAGACGTATTGTGCCAGCTGGGTTAGTACACTCGCT
TCTCACAGACCCACTTGGAACCCTTCGCACTGGAAGAATTGTCCAAAATA
TTGCCCCGGTGGAAAATTACCCTCCAATTTTTTCCCCCACTGAAAATCAT
CAAATAAATCAATCTTTCCCATTCCACTGAATTTTCTGACTTGAAACAAA
AGAATTTAGATCCCCGGCTATAAAAAATATGGCAATATCGATCCTTATCG
AGTTTCAGTCTGTTCGTTATTTCTACTCCCACTGGCTGAAAAATATCCTA
CTGGGTCTGTGAGACGTGGGTGTATAGCAAAGTTTATCAGAAGTTTTACT
GTCTCAAAATTAAATGCAATGAATTTGGGATGATTTTTAATGTAGCATTC
AAGGAGGAGTATTCAAATGATTCTTAAACTTAAATTTCTTGTTTATTCCA
GGTGAATTTTCGCGATTATACGAAGGACCAGAACTAACAAAAAAGCTATC
ACAATACCAAGCACTTTATGCGATTGGATTCCTTTCTGGACCTGCAGCTC
CAGTCATGTTTGGTAAAATTGATATCAAAATTTGTAGTTGGTGGACTTTG
AACCAAAATAACTTTGTTGGTATATTTATGGCACTCTTAACCTTGGTAAT
ACTACTTGCAATACTACTGGGTGTTCATGATCTAAGCATTCAAGATGTTG
CAGCGAATACTCAAAGTGAAATGCCAATAAATACGTCACAACCTCCGAGC
AACAGTAGTTTTAACCTAAAAAGCATTTTAAAGAATCTAGATTTGATGTT
GTTAATTCTTAGCTCATCGTTCACCAATGCACTTGCCGGTATGTTGGAAT
TGATGATCAATCTGACTGCCAGCGATTGGTTCAAATGGTCCTTGACTCGT
CTTGGCATTGTCACTTGTATTTGTGTGGTGATCTATACAGTTCTGATGTT
AACTGTAGCTCATAAAGTTATCCAACGCTACTTGAAGTTTTTGTTCCTAT
TATGTTTTCCAATACACGCGTTATGTGTAATCATTCTAATGCTGCCAAAG
ATAACCAATATTGATCACCTTTACTCCCAGGAAGCACATCTTGCTTTATG
CATTCTCACCAACACTTTTACTGGATTAACTATATCTGTTTTAGCCAGGA
ATCTATTATTTCAAATGGTTCCAGCAGGCAGTGCTAGTTTTTCAGATGGT
TTTAGAAGCACAACCCAACGTATTATGGGTATTGTAACATTTTTCTTGGC
AGCATGGGCTTATGATACCAGTGTGGTTACATCACCTATATTGTCATTAG
TTTTGTTAATGATTGCAATTATCCTTGCAACACGACGGAAGTTTCGACCA
GAAGTTTGTGGCGTTAACCAAGAACATCGACTGTTGCTGGATGAAAATGA
TAATTTATAGATCGACT Coding sequence (CDS) from alignment at sc0000305:75307..78073- >TCONS_00018738 ID=TCONS_00018738|Name=TCONS_00018738|organism=Clytia hemisphaerica|type=CDS|length=2736bp|location=Sequence derived from alignment at sc0000305:75307..78073- (Clytia hemisphaerica)
GTGAATTTTCGCGATTATACGAAGGACCAGAACTAACAAAAAAGCTATCA
CAATACCAAGCACTTTATGCGATTGGATTCCTTTCTGGACCTGCAGCTCC
AGTCATGTTTGGTAAAATTGATATCAAAATTTGTAGTTGGTGGACTTTGA
ACCAAAATAACTTTGTTGGTATATTTATGGCACTCTTAACCTTGGTAATA
CTACTTGCAATACTACTGGGTGTTCATGATCTAAGCATTCAAGATGTTGC
AGCGAATACTCAAAGTGAAATGCCAATAAATACGTCACAACCTCCGAGCA
ACAGTAGTTTTAACCTAAAAAGCATTTTAAAGAATCTAGATTTGATGTTG
TTAATTCTTAGCTCATCGTTCACCAATGCACTTGCCGGTATGTTGGAATT
GATGATCAATCTGACTGCCAGCGATTGGTTCAAATGGTCCTTGACTCGTC
TTGGCATTGTCACTTGTATTTGTGTGGTGATCTATACAGTTCTGATGTTA
ACTGTAGCTCATAAAGTTATCCAACGCTACTTGAAGTTTTTGTTCCTATT
ATGTTTTCCAATACACGCGTTATGTGTAATCATTCTAATGCTGCCAAAGA
TAACCAATATTGATCACCTTTACTCCCAGGAAGCACATCTTGCTTTATGC
ATTCTCACCAACACTTTTACTGGATTAACTATATCTGTTTTAGCCAGGAA
TCTATTATTTCAAATGGTTCCAGCAGGCAGTGCTAGTTTTTCAGATGGTT
TTAGAAGCACAACCCAACGTATTATGGGTATTGTAACATTTTTCTTGGCA
GCATGGGCTTATGATACCAGTGTGGTTACATCACCTATATTGTCATTAGT
TTTGTTAATGATTGCAATTATCCTTGCAACACGACGGAAGTTTCGACCAG
AAGTTTGTGGCGTTAACCAAGAACATCGACTGTTGCTGGATGAAAATGAT
AATTTATAGTCCGTTGCTGTCAGTGGTGAAACTTACGCCGAATTCCGCGA
AGCTGATTGGTTAAAAAAGCGTTGTTCTACTGCATGGATATGTATTGTGT
ACGCTCTAATCATCGGCATGGAATATTCCTGCATTTCAACATCACTTTTA
TATTACCTTCAAGATGATTTGAAATTACAAAATCCTAAGCTTTACTACAG
TCTCATAATGTGTTTGTCAGCTCTGTCTGCATCAGTTAGCGCTCTCATCA
GTGGCAAACTATTCGATAAAACACGACGATTAAAGCTGTTTATGTTGGTT
TTCACTTTACTGACGTTAGTTGGTAACCTTCTTTATACCATGCATGTTTC
AGTTTGGTTTTTGGTAGTGGGAAGATTTTTATGTGGATTGTGTGATGCAG
CACAGCCAATTATATCTGGTGAATTTTCGCGATTATACGAAGGACCAGAA
CTAACAAAAAAGCTATCACAATACCAAGCACTTTATGCGATTGGATTCCT
TTCTGGACCTGCAGCTCCAGTCATGTTTGGTAAAATTGATATCAAAATTT
GTAGTTGGTGGACTTTGAACCAAAATAACTTTGTTGGTATATTTATGGCA
CTCTTAACCTTGGTAATACTACTTGCAATACTACTGGGTGTTCATGATCT
AAGCATTCAAGATGTTGCAGCGAATACTCAAAGTGAAATGCCAATAAATA
CGTCACAACCTCCGAGCAACAGTAGTTTTAACCTAAAAAGCATTTTAAAG
AATCTAGATTTGATGTTGTTAATTCTTAGCTCATCGTTCACCAATGCACT
TGCCGGTATGTTGGAATTGATGATCAATCTGACTGCCAGCGATTGGTTCA
AATGGTCCTTGACTCGTCTTGGCATTGTCACTTGTATTTGTGTGGTGATC
TATACAGTTCTGATGTTAACTGTAGCTCATAAAGTTATCCAACGCTACTT
GAAGTTTTTGTTCCTATTATGTTTTCCAATACACGCGTTATGTGTAATCA
TTCTAATGCTGCCAAAGATAACCAATATTGATCACCTTTACTCCCAGGAA
GCACATCTTGCTTTATGCATTCTCACCAACACTTTTACTGGATTAACTAT
ATCTGTTTTAGCCAGGAATCTATTATTTCAAATGGTTCCAGCAGGCAGTG
CTAGTTTTTCAGATGGTTTTAGAAGCACAACCCAACGTATTATGGGTATT
GTAACATTTTTCTTGGCAGCATGGGCTTATGATACCAGTGTGGTTACATC
ACCTATATTGTCATTAGTTTTGTTAATGATTGCAATTATCCTTGCAACAC
GACGGAAGTTTCGACCAGAAGTTTGTGGCGTTAACCAAGAACATCGACTG
TTGCTGGATGAAAATGATAATTTATAGTCCGTTGCTGTCAGTGGTGAAAC
TTACGCCGAATTCCGCGAAGCTGATTGGTTAAAAAAGCGTTGTTCTACTG
CATGGATATGTATTGTGTACGCTCTAATCATCGGCATGGAATATTCCTGC
ATTTCAACATCACTTTTATATTACCTTCAAGATGATTTGAAATTACAAAA
TCCTAAGCTTTACTACAGTCTCATAATGTGTTTGTCAGCTCTGTCTGCAT
CAGTTAGCGCTCTCATCAGTGGCAAACTATTCGATAAAACACGACGATTA
AAGCTGTTTATGTTGGTTTTCACTTTACTGACGTTAGTTGGTAACCTTCT
TTATACCATGCATGTTTCAGTTTGGTTTTTGGTAGTGGGAAGATTTTTAT
GTGGATTGTGTGATGCAGCACAGCCAATTATATCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018738-exon-sc0000305-1575043694:77665..78073 | TCONS_00018738-exon-sc0000305-1575043694:77665..78073 | Clytia hemisphaerica | exon |
| TCONS_00018738-exon-sc0000305-1575043694:75307..76272 | TCONS_00018738-exon-sc0000305-1575043694:75307..76272 | Clytia hemisphaerica | exon |
| TCONS_00018738-exon-sc0000305-1510915933:77665..78073 | TCONS_00018738-exon-sc0000305-1510915933:77665..78073 | Clytia hemisphaerica | exon |
| TCONS_00018738-exon-sc0000305-1510915933:75307..76272 | TCONS_00018738-exon-sc0000305-1510915933:75307..76272 | Clytia hemisphaerica | exon |
| TCONS_00018738-exon-sc0000305-1491911889:77665..78073 | TCONS_00018738-exon-sc0000305-1491911889:77665..78073 | Clytia hemisphaerica | exon |
| TCONS_00018738-exon-sc0000305-1491911889:75307..76272 | TCONS_00018738-exon-sc0000305-1491911889:75307..76272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:75307..78073 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016021 |
integral component of membrane |
Blast
The following BLAST results are available for this feature:
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