TCONS_00018734 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018734
Unique NameTCONS_00018734
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1259

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018734 ID=TCONS_00018734|Name=TCONS_00018734|organism=Clytia hemisphaerica|type=transcript|length=1259bp
GTCTGcaaggatttctggttttccaTTCTTTTGGAGGAGGAACAGGATCT
GGTTTCACATCTCTTCTCATGGAAGCTTTGTCTGTTGAGTACGGTAAAAA
GTCCAAATTGGAATTCGCAATCTATCCAGCACCACAAATCTTCACAGCTG
TCGTAGAACCTTACAATGCGATTCTGATGACGCATACAACGTTGGAACAT
ACCGATTGTACATTCATGGTTGACAATGAAGCCATTTACGATATCTGTCA
TCGTAACATTTGTATTGAACGTCCAACTTATACTAACTTGAACCGTTTGA
TTGGTCAAATCGTCTCCTCTGTCACTGCTTCTTTGAGATTCGATGGTGCC
TTGAATGTTGATTTAAACGAATTTCAAACCAATTTGGTGCCATATCCTAG
AATCCATTTTCCATTGGCTACTTATGCTCCATTGATGTCTGCCGAAAAAG
CATTCCATGAGCAAGTTTCTGTAGAAATGATAACTAAACAATGCTTCGAA
CCTGCCAATCAAATGGTCAAATGTGACCCTCGACATGGAAAATACATGGC
TTGTTGTTTGCTCTATCGTGGTGATGTTGTCCCCAAAGACGTGAATTCTG
CTATCAGTTTCATGAAGACCAAACGTAGCATTCAATTTGTTGATTGGTGT
CCAACTGGATTCAAAGTTGGAATCAATTACCAGCCACCAACTGTTGTCCC
AGGGGGTGATTTGGTCAGAACTCAACGCGCTGTATGTATGTTATCTAATA
CAACAGCTATTGTTGAGGCCTGGGCTCGACGTTGATCATAAGTTTGATTT
AATGTATGCCAAACGTGCTTTTGTACATTGGTTCGTGGGAGAAGGAATGG
AAGAAGGTGAATTTTCAGAGGCTCGTGAAGATTTGGCTGCTCTTGAAAAA
GATTACGAAGAAGTTGGATTGGATTCGTATGatcaagaagaagaagatga
taATGAgtactaaaaaaacttttcatacaaaacattttaaaattcatttg
gATTAACGAGACTAGGCACTAGAGTTTCCATACAAAACATTGTAAACTTC
GCTTGGATTGACGAGACTAAATTCTGTATTGGCTAACGAAGTATAAATAC
TATGCTTTTATGGAATATATTGTAAATTTAGCTTCAGTAAGTCTGGCAAT
AGTACATAACATGTAAGAAAGAATCATTTTTCCTGAAGAAATTTCATTCG
CCTCCGCAAAAGCTCTGATTTAACGGCCCAAGACCTGAATTACCGGCCCA
AGACCTGCG
Run BLAST on NCBI

protein sequence of TCONS_00018734-protein

>TCONS_00018734-protein ID=TCONS_00018734-protein|Name=TCONS_00018734-protein|organism=Clytia hemisphaerica|type=polypeptide|length=260bp
LQGFLVFHSFGGGTGSGFTSLLMEALSVEYGKKSKLEFAIYPAPQIFTAV
VEPYNAILMTHTTLEHTDCTFMVDNEAIYDICHRNICIERPTYTNLNRLI
GQIVSSVTASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPLMSAEKA
FHEQVSVEMITKQCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSA
ISFMKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLVRTQRAVCMLSNT
TAIVEAWARR
Run BLAST on NCBI

transcript from alignment at sc0000305:40495..47051-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018734 ID=TCONS_00018734|Name=TCONS_00018734|organism=Clytia hemisphaerica|type=transcript|length=6557bp|location=Sequence derived from alignment at sc0000305:40495..47051- (Clytia hemisphaerica)
GTCTGCAAGGATTTCTGGTTTTCCATTCTTTTGGAGGAGGAACAGGATCT
GGTTTCACATCTCTTCTCATGGAAGCTTTGTCTGTTGAGTACGGTAAAAA
GTCCAAATTGGAATTCGCAATCTATCCAGCACCACAAATCTTCACAGCTG
TCGTAGAACCTTACAATGCGATTCTGATGACGCATACAACGTTGGAACAT
ACCGATTGTACATTCATGGTTGACAATGAAGCCATTTACGATATCTGTCA
TCGTAACATTTGTATTGAACGTCCAACTTATACTAACTTGAACCGTTTGA
TTGGTCAAATCGTCTCCTCTGTCACTGCTTCTTTGAGATTCGATGGTGCC
TTGAATGTTGATTTAAACGAATTTCAAACCAATTTGGTGCCATATCCTAG
AATCCATTTTCCATTGGCTACTTATGCTCCATTGATGTCTGCCGAAAAAG
CATTCCATGAGCAAGTATGTTTTTGCGTAATATTTCATAGATGCATAGTT
CGTATAAAAAACTCCGGTCTGGAGGGATAAGCTGGAGTTTTTACAAGCTC
TTATTTGATTTGGTTGGTCGTTAACCTTTAATAAAACACTTTTGTTATTT
TTTCTAAAGAACGCGTCATCTCTGTTACTTTTAATGACCAATTAGTGAAG
TATCTTATAAAAACTCCAGAACATCCCGGTCTGGAAGCCTTTTGTTCCTT
TATATTGTTTCAAACTTAGACTTGCGTTTAGAAATTAGTTTTTTTTTCTC
ACTTTCTGATCATGTGATTAACTTTTGAACCAATGCCGATAGAAGTATTT
GATAACGTGATAAAGAACTTAGCAAATCGATTTTTATAATCGTTATTAAA
GTTAACAAATAGTTACAGCAACAGTTCAGACCAGTACTTTTTATACGGGT
TTTGATAAATTACTATGCTGTTTCCTCGATTCAGGAACATAAAGGGAGTC
TTGTTTTCTTATCATATCCTAATACCGCTTACTATAGAGTACATATTGTA
AGTAGATAGCCCAGCAATCCAACACTTTTAGACAGTTTTCGATTGTTTGC
ACAGGGTCCACGACCAGCCGGCTCGAATATCCATGAACATGAGCGGAGCA
TCGGACGGGGCAGGGATGCGAACTGAAACCTTTAGTTTCAGCAGCTGGCT
CTTTGATGAGCTTAACTAACTGACAGAGCTAATCCGGGGGGGGGGGGGTT
ACTAAAGCAAAGCTGGTTACGGATATGCGCCGCTGGTCAGGGTACCTTTT
TCACCTCCATGAGTCCCAGGTAGGGTCGCAAAAACACCAAAATAGAAAAA
TTAGTCCCTCGTAGGGTGTCTATTTTGGAAAATTTGGGTAAAAAGTAGAA
AATTTTGCAATTTCAGTCCCATTCAGGGTCACTTTTCCCTCAAATTTTGG
CAATTTCTTTCAAAAAACCAGTCCCACGTAGGGTCCATTTTTCGAACCTC
AGCGGAGCATCCCCGTCAGTCGGCAAGGGTAGTTACCCCCGGGGGAGCTA
ATCATCATACAACTCGATTGTCCATCTTAAGTCGAGTTAAAACTTTCAGA
GCCTACTTGAATACCCAGTTCTATTTAATTGCTGTGACCATAGTGATTTT
TTTTATATTTTGCACGTACAAAAATACTACAACCTACCTGATGTAGCCCT
CAAACTTAAGCATTTCATACATTTTCTGTTACGTTAACCATGTTATGGTT
GGCATTCTCGAATCTAAAAATTCTAAAATCTTAATGAAAGAATTTGAGGA
AAAAGAAAATGAAGACTTCTGCGAAGAAAAGAATATCGACTTTAAAATCT
CATTTCAGCGAAGAAAATACATTCTGAAAATATTTTTGCCCTAGATAGGG
TATCTTTTCCCGAATCAAAAACATATTTTCGGAAAATTTTTGTAAAAACT
ACTTCTCTCAAAATCTCAAGAAAAGTGATTTTTGGCAAATGTTTCATGCA
CATTTTTTAAAGAAAAATAGTCTGTCCATACACCAATTAAGAAAACCATT
CCGGAAAAAAAAATTCTACTTTCAAAAAAATTTACTTTTAGAGCCTTCAA
TATAAGATGGGTTTGTGTAGAATTCTGAATTTTTCAAGGCTACCTGACTG
AAATTTTATTTATCATCACAGGTTTCTGTAGAAATGATAACTAAACAATG
CTTCGAACCTGCCAATNATCATGGCAGGTTTCTGTAGAAATGATAACTAA
ACAATGCTTCGAACCTGCCAATCAAATGGTCAAATGTGACCCTCGACATG
GAAAATACATGGCTTGTTGTTTGCTCTATCGTGGTGATGTTGTCCCCAAA
GACGTGAATTCTGCTATCAGTTTCATGAAGACCAAACGTAGCATTCAATT
TGTTGATTGGTGTCCAACTGGATTCAAAGTTGGAATCAATTACCAGCCAC
CAACTGTTGTCCCAGGGGGTGATTTGGTCAGAACTCAACGCGCTGTATGT
ATGTTATCTAATACAACAGCTATTGTTGAGGCCTGGGCTCGACGTTGATC
ATAAGTTTGATTTAATGTATGCCAAACGTGCTTTTGTACATTGGTTCGTG
GGAGAAGGTATTTCATTCTTTCGTTTCTTATCATTGGGTGAAATACACGT
TTTTTTATAAGAACAAACTATATAAAAACATAAGACTTCGATGACCAAAA
TATTAAAAACAAGTTAAGAACATCCGAAAGGCTTAAAAATTTTTGAATGT
TTTAATAAAAAAACGTGTAAGCTTCAAAAGTTTTGGAGTAATTGGGATTT
GGACTGACTCTTCTGAAGTTTATTTCTGCACATTTATTTTGCTTGGCTTC
TCGCCAAAATTATCAAATTCATTCCTCATTTGACCTGCATTTGATCTTAT
TTTCAGCTAAAATAACCTTAATAATTATCATTTCAATCAGTCATTTACAA
AGAAAAATTCGCTCAAGCTTTAGAAACTTAAATTGACAAAAAATTATTAA
ACGGTTTGCAAGTCCGGGGGGGGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNGGGGGGGGGGGGTATTTGGGCAAAAATGGGTG
CTGAGTATGTGCGGACATTAAGGGTCGGGTTTTCCACCTTTCAAAGTCTC
TCTAAGGGTTGGAAAATAAATCAGAAAGTTTTAAATTAGTCTCTCTAAGC
GTCGGAGAATTCACGAATTTTAGGAAAATATTTTGATTTCGAGAGAAAAA
TTGTAAAAAGTCTCTCTAAAGGTAAAACATTTTTCAAATATCGAAGAAAG
TTTTTCAAAAAAGTCTCTCTAAGGGTCGGTTTTCGGAGGTCCCGTCCGCA
CATACCCCTCATTCGCCAACCCAAGTACCCCCCTCCAAGGTTGCAAGTAG
AGTAATAAATGTTAAATGTGCTGATTTAGTAATTTAAGAAACTCGAGCCT
AAAATTGTTTAAGTTTTTTCCTGGTATTCGGCTAAATTTAAGTCAAACAT
TCTTAAAGAGGGGCTGTTTAAAAAAGTCTGAATAAAAATCCTGTCAAAAT
ACAGCTTCAGTGATTTGTGAAAAACAAGAAAAAACTAGTTCATTTTCGCA
ATTGACAGAAATACTTGCAATAGAAATCTTGAAATATTTTACTGAATGTT
TTTTTCTTTCCATGGTATTTCTCAATTTCTTAAGATTTTTATTGCTTCTT
TTTGAGTAAGAAATGTTCTTTTGACTATTTTCCTGGACATTCAGAGTACT
TTACCGTTCGGACTTGTTTGCAATAGATATTTAATAAATTGACGAGGAGA
GAAGTCTGGCAGAGGGGTTTAGTTTTGTTTTTGATAGGCTGTTGAATGAA
AAATTAACGCTGACAAATTCTTGATTTTAGGCCGGGAATAAAGCATGAAT
ATGAATTCAGCAACGGAACCTAAAAATGCCATTTATAGAGTATTTTTAAC
TGTAAATTGCCAATTAGCCCCCTATAAGTCTCAATAATTTCACATAAATG
TCATTTTATGCTTCAGGTGTCTATTTCTTGGTAAATTTAGATTTAATTTT
TATCCTAAGGATTTATCGTTAAAATGTTTAAGGGTGATTTCCCCAAAAAA
GCGTTAAGAATATCTTTGATGAAATGAAGAATAAAACATTTTTATAAAAA
AGTGGTCAGTCTGTGAAACGAACTTTTAGACTTTTTCGCCGAGCTTATAT
AAAACCCCTGCTGTAGCAGACGGTTTTTTTCCAGGATTGTTGGTTAAACA
TTTTCAAAGTAGATTCCTTCCTTCCAAGGAGCTGAAGTCAATTCAAAAAA
ACCCCTGTGTCACAGACCCGCTGGTAGAAAAATTGGCAAAAATTTAGTCC
CAGTGGGGAAAATACCCTAGAATTTCAGCACCACTGAGAAATTGACTTTG
ATTTCTTCCCCATTCGAAATCCATTGCTTAGAAATTGCACTCAAAAACCA
TCCCCATTGGATTTTTTAATCCTTGGAACAATAGAATTTTTATCCCCATT
GAGATTTCAATCGAAAATTTTATCCCCGTTGCAAGAAAAAGTTTCACCGG
GGCTGTGAGACAGGGGTGTTCAAAGGAAACCCTGTAATACGTAATACATG
AACAAAAAGGAAAAACATCGCGTGCTGGCTTGATTTAAAGGTGAACACGC
GATGTGATATGTGCGAGGGTTCTGCTTTTAAGTTGTTTTTGTAGACATTA
CGACTTACCTGTTATCTTCTAAGCCGTTGTCAAATCTCGAAAACGAGATA
TCATATAGATTTTTCCTTGTGCAGTATTACCCATTTAGTTTAAAGCCCCG
AAGGGACAAGAGTAGAAACTTTTGGATGGGAAATAAAGCTACTTAATTTC
CCATCTAGAACATTAGCACGTGATTTTTACACAAACACTGGCGGATTAAA
AGTAAAGTCTATTGCTAGATTTCAAAAAAATGCAGTCCTCAAAAACATAG
GAACATCTAGATACAATCCATCATCATGAGTGTGGCGCGTTCTAGGCACG
TTCTGGATGGGAAATAAGTGGCTTCACTTTTCCTTTCCTGATAATGGTTA
AAGGCTCTACTCTAGGCCTTCGCGCTTTAAACTCAATGGTATTACCTCCA
ATACTGAAAATTATTTTACCAATCTTCTCCCACGATATACACTTTCTTGT
ATATGATGCTCGGCTGTTAATACATTTTTGAGTTTCAAGTTTTTCTTATT
CTGTTCTTATTTATAGTTTGAAATTAATGTATTTTAGGCTTTGCAACCAA
TTTTGAACACTCAATTGCTTGAAATTGCATGAATTTCAGTCTCAGCATTG
TTCTTAAATCGTTCTTATTTTTTGGCGATTTTGAGTCAAATTATTCTTGT
AAAAATGTTCTTATAAAGTAAAAGGAGTGTATCATGCATCCTTTAACTTT
TGTAAAATTGAAAAATATCAGAGTGCAATAACGGGTGTAAGTAATAAGCA
AGAGGGATTTTTCAAATTTATTTGGCAAAATCTGTGTACGCGGGACGTAA
ATTTGTATATGTTCAGAAAAATGTCCCCAAAAGTGCTACCTCCAACCGAA
AAATGTCAACTTTGCTCTAAATAGAAGAATAGCTGTTTAACCAGCCAAAA
GAAGCATTTACCTCGTAAATTTTATTGAAAATTAATTTTAGTAAAACTTT
GGTTACTGTTTTTGTCGTTTTTTTCTTAATATACATTTAAAAAAAAAAAG
TAAAAGTGTTACTAAAATTATATCGAGTTGGATGGAATTGCGGAAACGAG
TACCCCCTGAACCAGCCTTAACCATAGATTTATAAAGCCCGAAGGGCTAG
ATGGAGTGCTTTAAGCTCTTCCAAGCAAAAAAAAAAAAATGAATATCGCA
GAAAATATTGCTGTTATTGTTTTCAAAAACCCACAAAGCTTTCTGATTGG
TCAAGCGCTGAAATTCTATCGTAATGTCACGTGACTTAGGTAGGATTTTC
TACCTAACCTCGGCACACTTTTCAGCAAAAGCACGATATCTAGCCCTTTG
GGCTTTATAAATCTATGGCCTGAACCCCAACTTTTCATAGTATCGGATGA
TTCGGGGACTGTCAAGCTTTAATGATTATTTTTTCCCTAAAGGAATGGAA
GAAGGTGAATTTTCAGAGGCTCGTGAAGATTTGGCTGCTCTTGAAAAAGA
TTACGAAGAAGTTGGATTGGATTCGTATGATCAAGAAGAAGAAGATGATA
ATGAGTACTAAAAAAACTTTTCATACAAAACATTTTAAAATTCATTTGGA
TTAACGAGACTAGGCACTAGAGTTTCCATACAAAACATTGTAAACTTCGC
TTGGATTGACGAGACTAAATTCTGTATTGGCTAACGAAGTATAAATACTA
TGCTTTTATGGAATATATTGTAAATTTAGCTTCAGTAAGTCTGGCAATAG
TACATAACATGTAAGAAAGAATCATTTTTCCTGAAGAAATTTCATTCGCC
TCCGCAAAAGCTCTGATTTAACGGCCCAAGACCTGAATTACCGGCCCAAG
ACCTGCG

Coding sequence (CDS) from alignment at sc0000305:40495..47051-

>TCONS_00018734 ID=TCONS_00018734|Name=TCONS_00018734|organism=Clytia hemisphaerica|type=CDS|length=1566bp|location=Sequence derived from alignment at sc0000305:40495..47051- (Clytia hemisphaerica)
GTTTCTGTAGAAATGATAACTAAACAATGCTTCGAACCTGCCAATCAAAT
GGTCAAATGTGACCCTCGACATGGAAAATACATGGCTTGTTGTTTGCTCT
ATCGTGGTGATGTTGTCCCCAAAGACGTGAATTCTGCTATCAGTTTCATG
AAGACCAAACGTAGCATTCAATTTGTTGATTGGTGTCCAACTGGATTCAA
AGTTGGAATCAATTACCAGCCACCAACTGTTGTCCCAGGGGGTGATTTGG
TCAGAACTCAACGCGCTGTATGTATGTTATCTAATACAACAGCTATTGTT
GAGGCCTGGGCTCGACGTTGACTGCAAGGATTTCTGGTTTTCCATTCTTT
TGGAGGAGGAACAGGATCTGGTTTCACATCTCTTCTCATGGAAGCTTTGT
CTGTTGAGTACGGTAAAAAGTCCAAATTGGAATTCGCAATCTATCCAGCA
CCACAAATCTTCACAGCTGTCGTAGAACCTTACAATGCGATTCTGATGAC
GCATACAACGTTGGAACATACCGATTGTACATTCATGGTTGACAATGAAG
CCATTTACGATATCTGTCATCGTAACATTTGTATTGAACGTCCAACTTAT
ACTAACTTGAACCGTTTGATTGGTCAAATCGTCTCCTCTGTCACTGCTTC
TTTGAGATTCGATGGTGCCTTGAATGTTGATTTAAACGAATTTCAAACCA
ATTTGGTGCCATATCCTAGAATCCATTTTCCATTGGCTACTTATGCTCCA
TTGATGTCTGCCGAAAAAGCATTCCATGAGCAAGTTTCTGTAGAAATGAT
AACTAAACAATGCTTCGAACCTGCCAATCAAATGGTCAAATGTGACCCTC
GACATGGAAAATACATGGCTTGTTGTTTGCTCTATCGTGGTGATGTTGTC
CCCAAAGACGTGAATTCTGCTATCAGTTTCATGAAGACCAAACGTAGCAT
TCAATTTGTTGATTGGTGTCCAACTGGATTCAAAGTTGGAATCAATTACC
AGCCACCAACTGTTGTCCCAGGGGGTGATTTGGTCAGAACTCAACGCGCT
GTATGTATGTTATCTAATACAACAGCTATTGTTGAGGCCTGGGCTCGACG
TTGACTGCAAGGATTTCTGGTTTTCCATTCTTTTGGAGGAGGAACAGGAT
CTGGTTTCACATCTCTTCTCATGGAAGCTTTGTCTGTTGAGTACGGTAAA
AAGTCCAAATTGGAATTCGCAATCTATCCAGCACCACAAATCTTCACAGC
TGTCGTAGAACCTTACAATGCGATTCTGATGACGCATACAACGTTGGAAC
ATACCGATTGTACATTCATGGTTGACAATGAAGCCATTTACGATATCTGT
CATCGTAACATTTGTATTGAACGTCCAACTTATACTAACTTGAACCGTTT
GATTGGTCAAATCGTCTCCTCTGTCACTGCTTCTTTGAGATTCGATGGTG
CCTTGAATGTTGATTTAAACGAATTTCAAACCAATTTGGTGCCATATCCT
AGAATCCATTTTCCATTGGCTACTTATGCTCCATTGATGTCTGCCGAAAA
AGCATTCCATGAGCAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010485XLOC_010485Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018734-proteinTCONS_00018734-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018734-exon-sc0000305-1575043694:46588..47051TCONS_00018734-exon-sc0000305-1575043694:46588..47051Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1575043694:44495..44874TCONS_00018734-exon-sc0000305-1575043694:44495..44874Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1575043694:40495..40909TCONS_00018734-exon-sc0000305-1575043694:40495..40909Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1510915933:46588..47051TCONS_00018734-exon-sc0000305-1510915933:46588..47051Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1510915933:44495..44874TCONS_00018734-exon-sc0000305-1510915933:44495..44874Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1510915933:40495..40909TCONS_00018734-exon-sc0000305-1510915933:40495..40909Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1491911889:46588..47051TCONS_00018734-exon-sc0000305-1491911889:46588..47051Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1491911889:44495..44874TCONS_00018734-exon-sc0000305-1491911889:44495..44874Clytia hemisphaericaexon
TCONS_00018734-exon-sc0000305-1491911889:40495..40909TCONS_00018734-exon-sc0000305-1491911889:40495..40909Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:40495..47051 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.37171	0.13182	0.174342	0.17751	0.136732	0.180079	0.0434443	0.0819998	0.23325	0.388526	0.479878	0.15767	0.179915	0.163483	0.0384138	0.0824508	0.813561	1.29551	0.0359489	0.11383	1.09738	0.962004	0.355747	0.817134	1.73165	3.13709	0.139012	0	0.0375049	0.114638
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002452Alpha_tubulin
IPR000217Tubulin
IPR003008Tubulin_FtsZ_GTPase
IPR018316Tubulin/FtsZ_2-layer-sand-dom
IPR017975Tubulin_CS
IPR008280Tub_FtsZ_C
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0005200structural constituent of cytoskeleton
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005874microtubule
Vocabulary: Biological Process
TermDefinition
GO:0007017microtubule-based process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007017 microtubule-based process
cellular_component GO:0005874 microtubule
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
molecular_function GO:0005200 structural constituent of cytoskeleton
Blast
[Close]
BLAST of TCONS_00018734 vs. Swiss-Prot (Human)
Match: TBA3C (Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C PE=1 SV=3)

HSP 1 Score: 462.996 bits (1190), Expect = 4.888e-160
Identity = 226/259 (87.26%), Postives = 243/259 (93.82%), Query Frame = 3 
Query:    3 LQGFLVFHXXXXXXXXXXXXLLMEALSVEYGKKSKLEFAIYPAPQIFTAVVEPYNAILMTHTTLEHTDCTFMVDNEAIYDICHRNICIERPTYTNLNRLIGQIVSSVTASLRFDGALNVDLNEFQTNLVPYPRIHFPLATYAPLMSAEKAFHEQVSVEMITKQCFEPANQMVKCDPRHGKYMACCLLYRGDVVPKDVNSAISFMKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLVRTQRAVCMLSNTTAIVEAWAR 779
            LQGFL+FHSFGGGTGSGF SLLME LSV+YGKKSKLEFAIYPAPQ+ TAVVEPYN+IL THTTLEH+DC FMVDNEAIYDIC RN+ IERPTYTNLNRLIGQIVSS+TASLRFDGALNVDL EFQTNLVPYPRIHFPLATYAP++SAEKA+HEQ+SV  IT  CFEPANQMVKCDPRHGKYMACC+LYRGDVVPKDVN+AI+ +KTKR+IQFVDWCPTGFKVGINYQPPTVVPGGDL + QRAVCMLSNTTAI EAWAR
Sbjct:  132 LQGFLIFHSFGGGTGSGFASLLMERLSVDYGKKSKLEFAIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEKAYHEQLSVAEITNACFEPANQMVKCDPRHGKYMACCMLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWAR 390

HSP 2 Score: 97.4413 bits (241), Expect = 6.079e-22
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 1 
Query:  781 VDHKFDLMYAKRAFVHWFVGEGMEEGEFSEAREDLAALEKDYEEVGL 921
            +DHKFDLMYAKRAFVHW+VGEGMEEGEFSEAREDLAALEKDYEEVG+
Sbjct:  391 LDHKFDLMYAKRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGV 437
The following BLAST results are available for this feature:
BLAST of TCONS_00018734 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TBA3C4.888e-16087.26Tubulin alpha-3C/D chain OS=Homo sapiens GN=TUBA3C... [more]
back to top