TCONS_00018731 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018731
Unique NameTCONS_00018731
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018731 ID=TCONS_00018731|Name=TCONS_00018731|organism=Clytia hemisphaerica|type=transcript|length=481bp
ATTCACCTTTAATTTAGCTAAGGTGCAAGAAATTCATCATCCAGAATCAT
TTATCAAAGAGAAGACGTGTCAAAACAACACATCGGTTGTCATTCAACTT
TTCTTTGTTCTATTGTTGGTATTAGCCAATGGGATTCAAGCTTTCAGAGC
TCGTAAACTGCCATCACACTTCAAGgaGACAAACCATGTCATCTATTCTT
CATTCACGACTGTTTTGCTCATCGCTGCATCAACTGGAATctattttgct
caaaaaagtttcaacgtCAAAGATCGAGTGCTTTGGATCAGTATTCATTT
GTTGAACGCGttgaattttttgttgatttataTTTACAAAATGTTTGTTA
TGTTATTCAAACCTCAACGAAACACAACAGAAGCTTTCAACGAAAAACGA
ACAAAGAGAATCAATAACCAATTTCTCAACTGAATTCGAAGCACAAAAGG
CACATGCAAATATCATTTTATTTatatactt
Run BLAST on NCBI

protein sequence of TCONS_00018731-protein

>TCONS_00018731-protein ID=TCONS_00018731-protein|Name=TCONS_00018731-protein|organism=Clytia hemisphaerica|type=polypeptide|length=143bp
FTFNLAKVQEIHHPESFIKEKTCQNNTSVVIQLFFVLLLVLANGIQAFRA
RKLPSHFKETNHVIYSSFTTVLLIAASTGIYFAQKSFNVKDRVLWISIHL
LNALNFLLIYIYKMFVMLFKPQRNTTEAFNEKRTKRINNQFLN
Run BLAST on NCBI

transcript from alignment at sc0000305:25165..27772-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018731 ID=TCONS_00018731|Name=TCONS_00018731|organism=Clytia hemisphaerica|type=transcript|length=2608bp|location=Sequence derived from alignment at sc0000305:25165..27772- (Clytia hemisphaerica)
ATTCACCTTTAATTTAGCTAAGGTGAGCATCGTTTAGTGAAGTGATAGTT
TGTATAACACCCACTTCTCACAGACCCACTTGGACCCCTTCCTGCTGCAA
AAATTGACCAAAATATCGTCCCTGGTGGAAAATTATCCTCCAATTTTTGT
CCCCACTGAAAATAATCAAATAAACCAATCCTCACTGCAAAATATTATGC
TAATTTTCCAATCCCCACTGAACTTTCTGACTTGAAAACAAAATCCCCAG
CAATAGAAAATATAGAAATATCAATCCCCATTGAGTTTCAGTCCGTTATT
TTTATCCCACTGGCTAAAAACATCCCACCGGGTCTGTGTATGTCATGTTT
GTCCATCTGCTGTGTGTTACTTTTGTTTTCAAACCCAATGTTTTCTTCTT
TTAAAAGATGATTTTGAGTTGTTCGTTTGTTTTTGATTGATAGAGCCTGG
TCTAGATTCATTCAGCCTTTGTTATTTGTTATGTTTTTATTTTTTGTCTC
TCTTTTTCTTTTGGTTTGCATGTTTTCAAATGTAAATGTGCCTTATTTGA
TTAGAGAGATTCGAATTCTTTTCGAAACAAAACAAAATCTTTTAAAGATA
AAAAGCAAATCTAAAATTAAACAGTTTGTCCGGGGGATTCGACTACACGT
TTTTTTTTTATTAGAACACCTAAAATTTGGCTGAGCCTGGATGTGCTTAT
TTTTTTAGCAATTTTCAGCCTGAAATGTTTTTAGATGCGTTCTTAAATTT
TCAGACTACTCCAAATCGACAATATGATACAAAATAAAGAGCACTTAAAT
TTGGCAAAATTTGGACAATATTTGACTCTCGACTTTTGAAGATCCACCCC
TAAATTCGGTTAAACTGCTTAAAAAGAGGAAAAAATTGTAGTTTCTTGTC
ATTTTTTTCAAACTGAGGCTGGGCATGTTCATAAGATGTTCTTAATTTTT
CGACGAATTTCAGCCTATATGTTCTTATAAACTAGGTTCTAATAAAAAAA
AACGTGTATTCGTATTTTGAATAAAACAGGCAAAAACTTTTATACTTAAA
GTATTTTCCTTTTAAAAGTGCCGCGATAGTTCGAACCACTAGGGAAAACA
AAAATGCTCGAGAGAAAGGCTTTGTGGATTCTGGGCCAAGTTGTGGTATT
TTCCTTTACATATTTTTTGTAAAGCTTCAAGGCTTGGAGACAGAAGAAGT
TTTTGTGTTGGTGCAATGCAACATGCTCTATCCCATTAACACAAGAAAAA
AAGTGTGTGTCCCTTTGAGTGTGTTTTTTTTTCATGATACAAAAGATGAG
GGAAATACCCAAAAGACACAAGATTTTATCCCAGGGACAAAAGCAAGATT
TCACTTTTATTGGTAGAAAGAAAAATGGGATGGAGACACGAGGAAGCGTT
TCAGGTTGGTGGGATGGATGGATTGCAACACACCAACACAAAAAAAACTT
CAAAAAATTACAGTACGGGTAACGACCCAGGAAATTCAACCCCCCAAAAA
AAAAACTTCTCGTGCCCCCAAGCCTTAAGAATCATACTCATAAGTCTTGA
AAAACTCAAAGTTTGGTTTTTTGCTGCTAGCTCAAGTTAAATTTGTTTTT
CACTTTCTTCGATTGAAATCAGCAAAATGATTATTGGCTTTTCTTTTCGA
AGGTGCAAGAAATTCATCATCCAGAATCATTTATCAAAGAGAAGACGTGT
CAAAACAACACATCGGTTGTCATTCAACTTTTCTTTGTTCTATTGTTGGT
ATTAGCCAATGGGATTCAAGCTTTCAGAGCTCGTAAACTGCCATCACACT
TCAAGGTTAGTTTTTTGAGAATGAAATTGAAAGACCAAAGGAAAACGTGT
TTAATTCGATTTTGAAGGCTCCGAAATTGTCAGAATTGTGTTTGCATGGT
CTAAACACAAAAACATTTTGAAACAAATCTAGCCAAGGCAATAAATAAAT
TGACTTCTTTGCATTACACTCTGCGGTAAGGAATACATGATTGAAATGTT
TTTGAAACCGTAACAGATCATATACTTCTATCTTGTTTGAAGATTCTATT
CAAGAAACACAGACAATAAGCAGAGAAAGAGAGAAGAGAGAGAAGTGAAC
CCTCCGAGTCATCCAGAATCACCCCCTGGATACGCTACCCTAGGAAAGGG
AAATTACCAAGCTTACTAGACACTGCTAGCCCTGCGCTCGCGACAGAGTT
ATTGTGCATCCAAATTCAGTATGCCGTGAACTGCGTCCATAATGTTAAAC
TTAACCATTAAACAAAAGTTGTGAAAATTTAACAATTTTTTTTCTTCATT
AGGAGACAAACCATGTCATCTATTCTTCATTCACGACTGTTTTGCTCATC
GCTGCATCAACTGGAATCTATTTTGCTCAAAAAAGTTTCAACGTCAAAGA
TCGAGTGCTTTGGATCAGTATTCATTTGTTGAACGCGTTGAATTTTTTGT
TGATTTATATTTACAAAATGTTTGTTATGTTATTCAAACCTCAACGAAAC
ACAACAGAAGCTTTCAACGAAAAACGAACAAAGAGAATCAATAACCAATT
TCTCAACTGAATTCGAAGCACAAAAGGCACATGCAAATATCATTTTATTT
ATATACTT

Coding sequence (CDS) from alignment at sc0000305:25165..27772-

>TCONS_00018731 ID=TCONS_00018731|Name=TCONS_00018731|organism=Clytia hemisphaerica|type=CDS|length=1296bp|location=Sequence derived from alignment at sc0000305:25165..27772- (Clytia hemisphaerica)
GAGACAAACCATGTCATCTATTCTTCATTCACGACTGTTTTGCTCATCGC
TGCATCAACTGGAATCTATTTTGCTCAAAAAAGTTTCAACGTCAAAGATC
GAGTGCTTTGGATCAGTATTCATTTGTTGAACGCGTTGAATTTTTTGTTG
ATTTATATTTACAAAATGTTTGTTATGTTATTCAAACCTCAACGAAACAC
AACAGAAGCTTTCAACGAAAAACGAACAAAGAGAATCAATAACCAATTTC
TCAACTGAGTGCAAGAAATTCATCATCCAGAATCATTTATCAAAGAGAAG
ACGTGTCAAAACAACACATCGGTTGTCATTCAACTTTTCTTTGTTCTATT
GTTGGTATTAGCCAATGGGATTCAAGCTTTCAGAGCTCGTAAACTGCCAT
CACACTTCAAGTTCACCTTTAATTTAGCTAAGGAGACAAACCATGTCATC
TATTCTTCATTCACGACTGTTTTGCTCATCGCTGCATCAACTGGAATCTA
TTTTGCTCAAAAAAGTTTCAACGTCAAAGATCGAGTGCTTTGGATCAGTA
TTCATTTGTTGAACGCGTTGAATTTTTTGTTGATTTATATTTACAAAATG
TTTGTTATGTTATTCAAACCTCAACGAAACACAACAGAAGCTTTCAACGA
AAAACGAACAAAGAGAATCAATAACCAATTTCTCAACTGAGTGCAAGAAA
TTCATCATCCAGAATCATTTATCAAAGAGAAGACGTGTCAAAACAACACA
TCGGTTGTCATTCAACTTTTCTTTGTTCTATTGTTGGTATTAGCCAATGG
GATTCAAGCTTTCAGAGCTCGTAAACTGCCATCACACTTCAAGTTCACCT
TTAATTTAGCTAAGGAGACAAACCATGTCATCTATTCTTCATTCACGACT
GTTTTGCTCATCGCTGCATCAACTGGAATCTATTTTGCTCAAAAAAGTTT
CAACGTCAAAGATCGAGTGCTTTGGATCAGTATTCATTTGTTGAACGCGT
TGAATTTTTTGTTGATTTATATTTACAAAATGTTTGTTATGTTATTCAAA
CCTCAACGAAACACAACAGAAGCTTTCAACGAAAAACGAACAAAGAGAAT
CAATAACCAATTTCTCAACTGAGTGCAAGAAATTCATCATCCAGAATCAT
TTATCAAAGAGAAGACGTGTCAAAACAACACATCGGTTGTCATTCAACTT
TTCTTTGTTCTATTGTTGGTATTAGCCAATGGGATTCAAGCTTTCAGAGC
TCGTAAACTGCCATCACACTTCAAGTTCACCTTTAATTTAGCTAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010482XLOC_010482Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018731-proteinTCONS_00018731-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018731-exon-sc0000305-1575043694:27751..27772TCONS_00018731-exon-sc0000305-1575043694:27751..27772Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1575043694:25968..26120TCONS_00018731-exon-sc0000305-1575043694:25968..26120Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1575043694:25165..25470TCONS_00018731-exon-sc0000305-1575043694:25165..25470Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1510915933:27751..27772TCONS_00018731-exon-sc0000305-1510915933:27751..27772Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1510915933:25968..26120TCONS_00018731-exon-sc0000305-1510915933:25968..26120Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1510915933:25165..25470TCONS_00018731-exon-sc0000305-1510915933:25165..25470Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1491911889:27751..27772TCONS_00018731-exon-sc0000305-1491911889:27751..27772Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1491911889:25968..26120TCONS_00018731-exon-sc0000305-1491911889:25968..26120Clytia hemisphaericaexon
TCONS_00018731-exon-sc0000305-1491911889:25165..25470TCONS_00018731-exon-sc0000305-1491911889:25165..25470Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000305supercontigsc0000305:25165..27772 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.225722	0	0	0	0	0	0	0	0	0	0	0	0.433734	0.224691	0.462354	0.392338	0.0979155	0.118989	1.84992	0.790236	0.304336	0.475732	0.267188	0.448287	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017978GPCR_3_C
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018731 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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