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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018726 ID=TCONS_00018726|Name=TCONS_00018726|organism=Clytia hemisphaerica|type=transcript|length=1049bp
TACATGGCCtggactgaaaaaaaaattttccatcattttatgctagatta
tttgtttttgttagGAATTTTAGTTAGCTTTATCCaggtaaaaaacaaaa
acgatccaagataaaaaaatccaatatGAGAGTTCTAGCAGACCAAATGA
TGACTTGTACTAAAGAGAAATTTGTGATCACTTCACCTATCGGTGATTTG
ATACTGGAACAATGTCAAAATGGATTACATTCAATCTCTCAAACGGTCAT
TCCCAGTGATCTTGAAGGAAAGTCTGAACATAGCAGTAGACATACAGTAA
TGATGTTGGACCCTCCTGAAGTGGAGAAGAGTCACAATATAAATGAGACA
ATCAAATGGTTTGTGGATTATTTCAATGACCCTTCTATTACCAAGAAAAT
GGAGCCACCCAAAATTTGTCAATATTCCATCAGAAAAGATACGTTTCGAG
GGAAAGTTCGTTTAGCATTGATGGAAAATGTGAAAGCAGGAGAAACGATC
ACTTATCAAAAACTGGCTGAGATGGTTGGGAATAAAGGTGCATCTCGTGC
AGTCGGTACAGCCATGTCCAACAACCCTCTATCCATATTGGTTCCATGTC
ACCGTGTCATCAAATCAGATGGTCGCCCTGGTAACTATGGAAAAAGTACG
CGTAACCAAGTCAAACAATGGCTATTAGAATTCGAAGGTGCTGAACTCTA
AGTTTAATCACGATGAGCGAATCTTGTTTCCTCGTTTGCCTGAGTTTCTT
AACCACTAAGAAATcccgaaaaaattaaatcctaTATACTTTGGGTATAA
AGCTGTGATACTGTGATGTATATAGTGACATTTCTTGGATTCATGACAGT
TTAGACCTTATAGTTTTTAAGAAAATCGTTTATATTCACACACTCAGGCG
AGGCCAAATGAATTTATTGTTCTACTGGCCCGACCTACCCTGTTTTTCCC
AAattcggaaaaaaaaaaaaaataataatgatgaATTTACAAAGCAGGAG
GTTTTTTGCAGATATTTTTAACTGAACAAggtgaaaaagtgaaaagtaa Run BLAST on NCBI transcript from alignment at sc0000305:291135..294521+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018726 ID=TCONS_00018726|Name=TCONS_00018726|organism=Clytia hemisphaerica|type=transcript|length=3387bp|location=Sequence derived from alignment at sc0000305:291135..294521+ (Clytia hemisphaerica)
TACATGGCCtggactgaaaaaaaaattttccatcattttatgctagatta
tttgtttttgttagGAATTTTAGTTAGCTTTATCCaggtaaaaaacaaaa
acgatccaagataaaaaaatccaatatGAGAGTTCTAGCAGACCAAATGA
TGACTTGTACTAAAGAGAAATTTGTGATCACTTCACCTATCGGTGATTTG
ATACTGGAACAATGTCAAAATGGATTACATTCAATCTCTCAAACGGTCAT
TCCCAGTGATCTTGAAGGAAAGTCTGAACATAGCAGTAGGTATAAAACTC
AACATTATCCGTTGATTGGAAACAACAGAGTCAATAATTCacggaattat
ttttacattttctcaaTAAAGATATAAAGATCTGACGTGACAAAGATTGA
ATATTAGTTTCCTGAATCTCGATCTTTTACCACGGAGATTCGTTAAGACA
TCAGTGAAAAATTAGATCGATTTTGGTAAAGGGGTAACATCTAAATGGTC
TTCTTACCTAAGGAGATCAATATGTATTCTTTTACACTTTctgaattttc
aataaactgaTTCGAATTTTCACTTGACTCTTTAGACATACAGTAATGAT
GTTGGACCCTCCTGAAGTGGAGAAGAGTCACAATATAAATGAGACAATCA
AATGGTTTGTGGATTATTTCAATGACCCTTCTATTACCAAGAAAATGGAG
CCACCCAAAATTTGTCAATATTCCATCAGAAAAGGTAGACGCTATGGTGT
AGTCATGTTTTTAGAGTTGGCAGCATTCTTTATCCATCATCAATTGTTAT
TCATATTGTTTTAAAGGGATCGAGTGTAATATTGTTTCGTCCATTTCTTT
GGCTTTTGGTCATtgtttttaaagggacataacagtacttgcgaaatttg
taaacaaactgtatgcagcggatacaaaatcaaatcaaatgtcacatgtc
aaaataaaaaatcaaaccattttgattgttcaattgttttacaagtttgt
tttggacacgtgattttaattgttctctttaatgacacgtggtctgcgca
atgtttacattttactactttaatgtctcTTTAAAGGGATCGAGTGTAAT
ACTTTTTATGTCCATTTCTTTGGCTTTTGGTCATTGTTTGTTAatttata
atcaaaacattttctGGGAGAAAGCtcgattttttattaaaaccGCTTAG
CTTACGATCGATTTTATAGAATACAGTCGACTCTCCTAAACTTGGGAAGA
GATTTCTTTTAAATAGGCCTGGGTTTTTTTATCTCAATGTATCCAAATCG
ATTTGTCTCACTTCCTTGTATTAATCTCATTTCGATCATTTATTCAGATA
CGTTTCGAGGGAAAGTTCGTTTAGCATTGATGGAAAATGTGAAAGCAGGA
GAAACGATCACTTATCAAAAACTGGCTGAGATGGTTGGGAATAAAGGTAT
TGTTCGAGGTCATCTCAGCATTTTGAAATTGGTTGAAGACTGCGTCAATT
ATTTGGAGAGGGGTTGAATTACTTTCTGATTCATAAAAAGGGGAGGGGGG
AAATTATGATACAGGTGTTTCGGCTGTATTTTGTTATGATTCATCTTAGA
AGAATCACCTTGGAAAATGGTGTTGTTATCATACCACACTCTTGGAATTG
CTGAATAGAGTTAGGTTGAAAAAAAGGCGAAGGGTTCTCTTAAAAAAAGG
GATTTAAACCCCTTTGCTCATAATCATAATGTTCTCTCTAGTGGTAGGGA
AAACTGACCAAAACCAGAGAGAATAGAACAGACGTGATGTTTGAAACATC
CGGATCGTATGTTTGCGTACTTCCATCATTGCAAAACTTTTCGTATCTCT
TTTATAAAACAGCTCCGATGTAAACTTCCCTTTCCTTTTCTATCGTTTAC
AAGTATAGTTTAAGTATTATGAATTTCCATGTACATGTCCACAGCGTCAC
GTAAAGCTTGTACAATAGACGGATATCGGcataacgtgaaaactcagatt
tgacctccgaaaattccccacaatgctttccGCGGaaaaaaagttcacgg
tgaaatttattccgcacaaagcattgtggggattTCTCgtgggtcaaatc
tgagttttcatgtgaagCCGATATTGTCTATTTAACCCTCTTAAAATTTT
TGACTCGAGATTGAAACTTTCATTGCATGTTTAAACTGATTGAAGTGCAT
AAGGAATAGGTGTTCGATCTTTTTTATAGCTATGGTGTAGTTACTGGGCA
TTAactatattttctttaaaacgtTTGAAATTCAAGGATATGTTAATATT
GAAAGATTGAGTGCATTGATGAATTTGTCTTTGCAAAGTTCTTTACCCAA
TTTTGGGGTTGTAACGTCACTCTTTTGGCCATTAAAGGTTTTACCCGGCC
TAATTCGAAGCCCTTTCTTTAAAGAGACTAAGATCGAAATTAAATTAAGA
CCAGGCTAAACAAATGGAAATAATTGAGTTTTTGCGTAATAAGTGCCGGC
GTAAACGGGACCAGCGCTCAATTAGAGCCGTTTTAAAAAGGGCTGATACT
ACTTTGAACTAACCGCATATGGTTGCGTCTCACGAAAGATGTCACGGATC
CTAAGGGTTGCCCCGGCCCACTAAAGGGCTCGAACCTCTTGTCTCATTTC
TATAACTGATATTTGTGGAACTTTTCAATAAATtgaatgatttttctttc
tcgATACCTTCTTTATGTTTTGGGTCCGTACAAGAATTGGTATTATTTCA
ACATTGAAGGGCGGGAAGTGGGGGTCGTACTCGTAGAGAAATAGGTTCCG
TAATATCTTTTGTCCTTACTTGTAGATCTGTCTGGatagtttcaaaattt
caattgttttccGTCCAATCTTCAGGTGCATCTCGTGCAGTCGGTACAGC
CATGTCCAACAACCCTCTATCCATATTGGTTCCATGTCACCGTGTCATCA
AATCAGATGGTCGCCCTGGTAACTATGGAAAAAGTACGCGTAACCAAGTC
AAACAATGGCTATTAGAATTCGAAGGTGCTGAACTCTAAGTTTAATCACG
ATGAGCGAATCTTGTTTCCTCGTTTGCCTGAGTTTCTTAACCACTAAGAA
ATcccgaaaaaattaaatcctaTATACTTTGGGTATAAAGCTGTGATACT
GTGATGTATATAGTGACATTTCTTGGATTCATGACAGTTTAGACCTTATA
GTTTTTAAGAAAATCGTTTATATTCACACACTCAGGCGAGGCCAAATGAA
TTTATTGTTCTACTGGCCCGACCTACCCTGTTTTTCCCAAattcggaaaa
aaaaaaaaaataataatgatgaATTTACAAAGCAGGAGGTTTTTTGCAGA
TATTTTTAACTGAACAAggtgaaaaagtgaaaagtaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018726-exon-sc0000305-1491911889:291135..291423 | TCONS_00018726-exon-sc0000305-1491911889:291135..291423 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1510915933:291135..291423 | TCONS_00018726-exon-sc0000305-1510915933:291135..291423 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1575043694:291135..291423 | TCONS_00018726-exon-sc0000305-1575043694:291135..291423 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1491911889:291720..291868 | TCONS_00018726-exon-sc0000305-1491911889:291720..291868 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1510915933:291720..291868 | TCONS_00018726-exon-sc0000305-1510915933:291720..291868 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1575043694:291720..291868 | TCONS_00018726-exon-sc0000305-1575043694:291720..291868 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1491911889:292482..292580 | TCONS_00018726-exon-sc0000305-1491911889:292482..292580 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1510915933:292482..292580 | TCONS_00018726-exon-sc0000305-1510915933:292482..292580 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1575043694:292482..292580 | TCONS_00018726-exon-sc0000305-1575043694:292482..292580 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1491911889:294010..294521 | TCONS_00018726-exon-sc0000305-1491911889:294010..294521 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1510915933:294010..294521 | TCONS_00018726-exon-sc0000305-1510915933:294010..294521 | Clytia hemisphaerica | exon |
| TCONS_00018726-exon-sc0000305-1575043694:294010..294521 | TCONS_00018726-exon-sc0000305-1575043694:294010..294521 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:291135..294521 + |
Blast
BLAST of TCONS_00018726 vs. Swiss-Prot (Human)
Match: MGMT (Methylated-DNA--protein-cysteine methyltransferase OS=Homo sapiens GN=MGMT PE=1 SV=1) HSP 1 Score: 112.079 bits (279), Expect = 1.009e-28 Identity = 63/181 (34.81%), Postives = 93/181 (51.38%), Query Frame = 3
Query: 156 CTKEKFVITSPIGDLILEQCQNGLHSISQTVIPSDLEGKSEHSSRHTVMMLDPPEVEKSHNINETIKWFVDYFNDPSITKKMEPPKICQYSIRKDTFRGKVRLALMENVKAGETITYQKLAEMVGNKGASRAVGTAMSNNPLSILVPCHRVIKSDGRPGNYGKSTRNQVKQWLLEFEGAEL 698
C ++ + SP+G L L C+ GLH I L GK ++ + + + + W YF+ P ++ P + ++++F +V L++ VK GE I+YQ+LA + GN A+RAVG AM NP+ IL+PCHRV+ S G GNY S VK+WLL EG L
Sbjct: 5 CEMKRTTLDSPLGKLELSGCEQGLHEI-------KLLGKGTSAADAVEVPAPAAVLGGPEPLMQCTAWLNAYFHQPEAIEEFPVPALHHPVFQQESFTRQVLWKLLKVVKFGEVISYQQLAALAGNPKAARAVGGAMRGNPVPILIPCHRVVCSSGAVGNY--SGGLAVKEWLLAHEGHRL 176
The following BLAST results are available for this feature:
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