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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018724 ID=TCONS_00018724|Name=TCONS_00018724|organism=Clytia hemisphaerica|type=transcript|length=1520bp
AATaaataacaaaacaaagaaaacaaaatgggtgatgaaaagaaagttga
tttaaaattatcatCACTCAGTCGATTTGGTATACGTGGTCGTGGCGGTG
CTAGAGGTAGTTCTGGGGCAGCATCAAGACTACCATCATTAAAACCGACA
CGAGATCTCACATTAGGAGGTACCCCTAAGAGAACGTTTACACCAAATAT
TGTTGGTCGTAGTACAAAAAAGGAAGATGGTGATAATCAAGCTGGACCAA
GCTATGATCGACCAAGGAGAGGCTCAGGTCGTGGTCGTGGCCGTGGAAGG
GGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGTCGTGGAGATATCATTCA
ATCAAGTGGTGTATTTTCACAAGGTATATTTGGACGAGAAACCTTAGCTG
GTGCCTTATCAGGAAGTTATGGTcgaggtggtggtggtggtgttgCCAAG
AATGAGGTAGACGATGGTGAAGAGGCTGTGTCCAAAacatcttatataaa
aaacatgaGGGGTGACGAAGAAGCAGAttctaataaaatttttgaaatgt
tgaACGATGAAGGGAAAATTGAGGTCGATGATGAAGATTTGAAAGCTGGT
GGTTTGATGCCAATCACATTACCACTGGCGTCAAAATTAGCTAATAAAAT
TAAAACAGAggaaaatgatataaaaactGAAGTACCGAGTCAGAGTGACG
ATTCTGATGATAATATAGATGAAGATAATATAAAAAAGCCAGATAATCCA
CCTTCACCTATCAAAAAACCCATCAATAAAGCAGCCGCTGCTGAACAACC
CACTCTAGAGATAAATGATATATTTAAGAAAGATGGTATGGAGGAAGGAG
CCTTGTTTTTCTTACAATTACCAGATGCTCTTCCCATAAACTACTTAGCT
CAAGATGTCGATGAAGAGGTCAAGCCTGAAAAAGACGGCGCATCTGCTTC
AAAACAAATCTCTTATGAAGAAGAAGATATtgaagaaaaactgaaaaagt
tttcatttaataatgtcTCAGAAGGTTATATCGGTAAATTACAAATACAC
AAATCAGGTAAAGTTCGAATGCGGCTTGGCAATGTCTCCTTAGACTTATC
ACTCGGTACACCTTGTGGATTTTTACAAGATTTAGTGTCAGTGAATACAG
ATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCATATTGATAATCGAATT
ATAGCGGTGCCGGACTATCATTCATTATTGGGAAGTATGCAGTAGCGTTG
CTTGTTGTTATATATATaggttttgtcaaattttcataaattttatttac
agttgttttttttttgtttagagcttataattttataaaaaacccAAACA
CTTACAAAGAAACCAAAATTAATTCTGCTGTTGTACAAAATCTTCATTGA
AATATGTATTTTCCTTACCACATGCCTTACTAACTAAATCTATCCTCTGA
TATTTATCTGAATTATTTCGTGTCATAATACTTACTGGCAGGctaaaatt
tcaattcaaaaggttttttt Run BLAST on NCBI transcript from alignment at sc0000305:289560..291079+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018724 ID=TCONS_00018724|Name=TCONS_00018724|organism=Clytia hemisphaerica|type=transcript|length=1520bp|location=Sequence derived from alignment at sc0000305:289560..291079+ (Clytia hemisphaerica)
AATaaataacaaaacaaagaaaacaaaatgggtgatgaaaagaaagttga
tttaaaattatcatCACTCAGTCGATTTGGTATACGTGGTCGTGGCGGTG
CTAGAGGTAGTTCTGGGGCAGCATCAAGACTACCATCATTAAAACCGACA
CGAGATCTCACATTAGGAGGTACCCCTAAGAGAACGTTTACACCAAATAT
TGTTGGTCGTAGTACAAAAAAGGAAGATGGTGATAATCAAGCTGGACCAA
GCTATGATCGACCAAGGAGAGGCTCAGGTCGTGGTCGTGGCCGTGGAAGG
GGTAGAGGACGTGGTCAAGGAGGGGGCAGGGGTCGTGGAGATATCATTCA
ATCAAGTGGTGTATTTTCACAAGGTATATTTGGACGAGAAACCTTAGCTG
GTGCCTTATCAGGAAGTTATGGTcgaggtggtggtggtggtgttgCCAAG
AATGAGGTAGACGATGGTGAAGAGGCTGTGTCCAAAacatcttatataaa
aaacatgaGGGGTGACGAAGAAGCAGAttctaataaaatttttgaaatgt
tgaACGATGAAGGGAAAATTGAGGTCGATGATGAAGATTTGAAAGCTGGT
GGTTTGATGCCAATCACATTACCACTGGCGTCAAAATTAGCTAATAAAAT
TAAAACAGAggaaaatgatataaaaactGAAGTACCGAGTCAGAGTGACG
ATTCTGATGATAATATAGATGAAGATAATATAAAAAAGCCAGATAATCCA
CCTTCACCTATCAAAAAACCCATCAATAAAGCAGCCGCTGCTGAACAACC
CACTCTAGAGATAAATGATATATTTAAGAAAGATGGTATGGAGGAAGGAG
CCTTGTTTTTCTTACAATTACCAGATGCTCTTCCCATAAACTACTTAGCT
CAAGATGTCGATGAAGAGGTCAAGCCTGAAAAAGACGGCGCATCTGCTTC
AAAACAAATCTCTTATGAAGAAGAAGATATtgaagaaaaactgaaaaagt
tttcatttaataatgtcTCAGAAGGTTATATCGGTAAATTACAAATACAC
AAATCAGGTAAAGTTCGAATGCGGCTTGGCAATGTCTCCTTAGACTTATC
ACTCGGTACACCTTGTGGATTTTTACAAGATTTAGTGTCAGTGAATACAG
ATAAGAGCCCAGGTGACATGGTTTGTTTAGGTCATATTGATAATCGAATT
ATAGCGGTGCCGGACTATCATTCATTATTGGGAAGTATGCAGTAGCGTTG
CTTGTTGTTATATATATaggttttgtcaaattttcataaattttatttac
agttgttttttttttgtttagagcttataattttataaaaaacccAAACA
CTTACAAAGAAACCAAAATTAATTCTGCTGTTGTACAAAATCTTCATTGA
AATATGTATTTTCCTTACCACATGCCTTACTAACTAAATCTATCCTCTGA
TATTTATCTGAATTATTTCGTGTCATAATACTTACTGGCAGGctaaaatt
tcaattcaaaaggttttttt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018724-exon-sc0000305-1491911889:289560..291079 | TCONS_00018724-exon-sc0000305-1491911889:289560..291079 | Clytia hemisphaerica | exon |
| TCONS_00018724-exon-sc0000305-1510915933:289560..291079 | TCONS_00018724-exon-sc0000305-1510915933:289560..291079 | Clytia hemisphaerica | exon |
| TCONS_00018724-exon-sc0000305-1575043694:289560..291079 | TCONS_00018724-exon-sc0000305-1575043694:289560..291079 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000305 | supercontig | sc0000305:289560..291079 + |
Blast
BLAST of TCONS_00018724 vs. Swiss-Prot (Human)
Match: RPC4 (DNA-directed RNA polymerase III subunit RPC4 OS=Homo sapiens GN=POLR3D PE=1 SV=2) HSP 1 Score: 103.99 bits (258), Expect = 4.285e-24 Identity = 56/133 (42.11%), Postives = 84/133 (63.16%), Query Frame = 1
Query: 841 EEGALFFLQLPDALPINYLAQDVDEEVKPEKDGASASKQISYEEEDIEEKLKK--FSFNNVSEGYIGKLQIHKSGKVRMRLGNVSLDLSLGTPCGFLQDLVSVNT-DKSPGDMVCLGHIDNRIIAVPDYHSLL 1230
+E L FLQLPD LP QD+ + +K E G + +E+D E KL + + +++EG +GKL I KSG+V++ LG V+LD+++GT C FLQ+LVSV D G+M LGH+ ++++ PD+ SLL
Sbjct: 262 KEEELLFLQLPDTLPGQPPTQDI-KPIKTEVQGEDGQVVLIKQEKDREAKLAENACTLADLTEGQVGKLLIRKSGRVQLLLGKVTLDVTMGTACSFLQELVSVGLGDSRTGEMTVLGHVKHKLVCSPDFESLL 393
The following BLAST results are available for this feature:
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