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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018712 ID=TCONS_00018712|Name=TCONS_00018712|organism=Clytia hemisphaerica|type=transcript|length=928bp
CCCTCCCCTATAAGATCTTCTAAATCGTGCTCTCGTTAAGCAAGAAGTCT
GTAATAATAAATTGTTAGCTTTTCGATGGTATGATTTTGAGCTACTAATG
CTCTGAAAGTCAATGTGTAAACTATGTGGTACCATCTCTTCCAAAGGTCA
GCTTCGAGAAGCTCTTTCTCGACTGGAAACAAAAAGTTTCAATCCAATTT
CCCAGTGATTATCAGTAAACCATTATCTTCAATAACAGGAATACGTTACA
CGtgtaaaaagaaattaatcTCAATGACGGTACAATTTTATACCCATCGG
AGCATGAGCAGTCACTGTTCACTTTGCCTGACCCTTCCCCATGCCTCTCA
CTCTGACATGGGTACCAGCAAAACTCTTCTGGGTACCCACATCCAGAAGT
CATCGGTTTTTGTACTAATTCAGTACTCTTTTTACAAGTAGCCCATTGGT
ACGACTCATAACGGGTCAATTTAACACAGCTTCTTTTTTCAGCGTCTATA
GCGGCTTTACAGTATTTCTTACTAGCTTCTGTACACGTGCATGCTTCTAC
GATTTCTCTCTGAAACTCATTGTTGGTCAATCTCATTTGACATTCGGGAT
ACCAACAGTATCCTGTCTTTGAATTACAAATATATTGCCTCGCTGATTCA
GTCTCGATTTCTGCTCTGGCCATACATTTGACTTCTTGATAATCGAgata
ataaggtaatatttgacATTCCAATaagtttttttgtgatttgTAACAAC
TAGAAGCTTCCTCTGTGTTGACCAACTGGTGAAAAAATACCGTGTATATT
AAAGACCTGTAAACAAgcctcatttttatttttccttacTCTCTGAAAAG
AAGAAGATTTAAGAAGCAAAAGACCAAGAAAGCTAAAATGCTCTCCACCT
AAATCTGCTAAAAATGTTGGAGCCTAAT Run BLAST on NCBI protein sequence of TCONS_00018712-protein >TCONS_00018712-protein ID=TCONS_00018712-protein|Name=TCONS_00018712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
MRLVYRSLIYTVFFHQLVNTEEASSCYKSQKNLLECQILPYYLDYQEVKC
MARAEIETESARQYICNSKTGYCWYPECQMRLTNNEFQREIVEACTCTEA
SKKYCKAAIDAEKRSCVKLTRYESYQWATCKKSTELVQKPMTSGCGYPEE
FCWYPCQSERHGEGSGKVNSDCSCSDGYKIVPSLRLISFYTCNVFLLLKI
MVY Run BLAST on NCBI transcript from alignment at sc0000304:199330..200257 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018712 ID=TCONS_00018712|Name=TCONS_00018712|organism=Clytia hemisphaerica|type=transcript|length=928bp|location=Sequence derived from alignment at sc0000304:199330..200257 (Clytia hemisphaerica)
ATTAGGCTCCAACATTTTTAGCAGATTTAGGTGGAGAGCATTTTAGCTTT
CTTGGTCTTTTGCTTCTTAAATCTTCTTCTTTTCAGAGAgtaaggaaaaa
taaaaatgaggcTTGTTTACAGGTCTTTAATATACACGGTATTTTTTCAC
CAGTTGGTCAACACAGAGGAAGCTTCTAGTTGTTAcaaatcacaaaaaaa
cttATTGGAATgtcaaatattaccttattatcTCGATTATCAAGAAGTCA
AATGTATGGCCAGAGCAGAAATCGAGACTGAATCAGCGAGGCAATATATT
TGTAATTCAAAGACAGGATACTGTTGGTATCCCGAATGTCAAATGAGATT
GACCAACAATGAGTTTCAGAGAGAAATCGTAGAAGCATGCACGTGTACAG
AAGCTAGTAAGAAATACTGTAAAGCCGCTATAGACGCTGAAAAAAGAAGC
TGTGTTAAATTGACCCGTTATGAGTCGTACCAATGGGCTACTTGTAAAAA
GAGTACTGAATTAGTACAAAAACCGATGACTTCTGGATGTGGGTACCCAG
AAGAGTTTTGCTGGTACCCATGTCAGAGTGAGAGGCATGGGGAAGGGTCA
GGCAAAGTGAACAGTGACTGCTCATGCTCCGATGGGTATAAAATTGTACC
GTCATTGAgattaatttctttttacaCGTGTAACGTATTCCTGTTATTGA
AGATAATGGTTTACTGATAATCACTGGGAAATTGGATTGAAACTTTTTGT
TTCCAGTCGAGAAAGAGCTTCTCGAAGCTGACCTTTGGAAGAGATGGTAC
CACATAGTTTACACATTGACTTTCAGAGCATTAGTAGCTCAAAATCATAC
CATCGAAAAGCTAACAATTTATTATTACAGACTTCTTGCTTAACGAGAGC
ACGATTTAGAAGATCTTATAGGGGAGGG Coding sequence (CDS) from alignment at sc0000304:199330..200257 >TCONS_00018712 ID=TCONS_00018712|Name=TCONS_00018712|organism=Clytia hemisphaerica|type=CDS|length=612bp|location=Sequence derived from alignment at sc0000304:199330..200257 (Clytia hemisphaerica)
atgaggcTTGTTTACAGGTCTTTAATATACACGGTATTTTTTCACCAGTT
GGTCAACACAGAGGAAGCTTCTAGTTGTTAcaaatcacaaaaaaacttAT
TGGAATgtcaaatattaccttattatcTCGATTATCAAGAAGTCAAATGT
ATGGCCAGAGCAGAAATCGAGACTGAATCAGCGAGGCAATATATTTGTAA
TTCAAAGACAGGATACTGTTGGTATCCCGAATGTCAAATGAGATTGACCA
ACAATGAGTTTCAGAGAGAAATCGTAGAAGCATGCACGTGTACAGAAGCT
AGTAAGAAATACTGTAAAGCCGCTATAGACGCTGAAAAAAGAAGCTGTGT
TAAATTGACCCGTTATGAGTCGTACCAATGGGCTACTTGTAAAAAGAGTA
CTGAATTAGTACAAAAACCGATGACTTCTGGATGTGGGTACCCAGAAGAG
TTTTGCTGGTACCCATGTCAGAGTGAGAGGCATGGGGAAGGGTCAGGCAA
AGTGAACAGTGACTGCTCATGCTCCGATGGGTATAAAATTGTACCGTCAT
TGAgattaatttctttttacaCGTGTAACGTATTCCTGTTATTGAAGATA
ATGGTTTACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018712-exon-sc0000304-1491911889:199330..200257 | TCONS_00018712-exon-sc0000304-1491911889:199330..200257 | Clytia hemisphaerica | exon |
| TCONS_00018712-exon-sc0000304-1510915933:199330..200257 | TCONS_00018712-exon-sc0000304-1510915933:199330..200257 | Clytia hemisphaerica | exon |
| TCONS_00018712-exon-sc0000304-1575043694:199330..200257 | TCONS_00018712-exon-sc0000304-1575043694:199330..200257 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:199330..200257 . |
Blast
The following BLAST results are available for this feature:
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