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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018711 ID=TCONS_00018711|Name=TCONS_00018711|organism=Clytia hemisphaerica|type=transcript|length=2314bp
TTTAGTTATAGTTGTTGTAGAAGACCTATGGCGGAGAGCTGATAAGTAAA
GTAGCAGGAGTGTATTGTCTTCGAATGCGCTCGTCCGCGGTATCTTAAAA
TGTAAACACATTGCATCTATTTTGTACTAGTATAAAGTTACAGTATAAAA
GGTGTTCAACATTTTGCTCTCAGAAAAGAAACAAATGTGTGAATATTATT
CGCACCTCACCATTCTACAAGATCTTTTGCTAAACAAAACATCTGAAAGA
TATAATTGATAAACTTTCTCTCTGTGAAGCAGATGTATTGAGTAGCGGCT
TGGAAACTtgatacaaaaaatgaaaaagtttcacTTCATTTATGCTGTTG
AGTGTTCAGTGTTGCTAGTTGTTTTCGAATGAAGAAAGTTTCTTGAAGAA
GTTGAGTAAAGATGGTTTTAACTAAAGAGCAGAGTGGACTTTCATGCGAT
AATGTGAACTGGATACCAGAGACAGTCCATTTCTACAACAATCAAGATAC
GATCACCCACGATGAGAAAACTGGGTTATTATCCTACCCGAAAAAAGACT
TCCTAACTGTTCCTGTCCATCACACATCTTCCCATAAAAGTTACCAATCT
ATTTCGCCGTCCGACTCCTTCCAAGAATCATGCCACTCCGATATCTCAAC
ACGTTCCATCTTACTAACGTACAACGGAAATACGGGAACGCTCGGTGGAG
GAATAAGCCTCGTAATGACCGTAGCTTCAATTTTACCGTTTCTCCAAGGA
GCATCCGTCTTCTCTCTACCATACGCTTTCGTGACTGCTGGCAAAGCGTT
CTTACCCGCTTTTCTGACAGTGAACTATTTGGCGACGCTCTGTTCCAGAC
TTCTTATGGACAGCATTTATGTTACCTCACCAGACGGTACGCATCGACAT
CGAATCTATAACAGTTATGCGGACCTAGCGTTCGCTTGTTGGGGACAGTT
CGGAGCAGTGATCATGAAAATCTTAAATTACCTTTTCTTTCTGTTAGTAA
ACGTTGTGAACTGTGTGTTGTTTTTGCGTTGTTTGGATAACATGCTTGTT
GGTCAAGACAAGGTGACACCGTTCCAAATACAATGTGTTTTGCTGGTCCT
GTTGATCCCTATTGTTCTGGCCATCAAAGATGTCTCCATATTTTCATACT
TTGGTTTATTTAGCACCTTATCTGTCCTGTTGGCATGTGTAATGtccatg
tttgttttgatccaAAGGTCTGATCGTTGGATAGAGAATTTTGAGCTCCT
GCCTGTCATCGATTGGGGGAAATATCGTGCTTCTTTGGGAATCACTATGC
TGACAATGTTCGTGGCACCAACGCTTCCTGGCTTCGAAAGCGTGATGGCA
GAACCCAAACGATTCCCCACCGCTATCAACATCGCATTCGGGGTCTCGGG
CTCCTTCAAGGCGGTTTTCGGCGTCATCGGTGCCTTATCATTTGGGAGTG
TTACACAAGAAATGCTAGCGACAAATATTTCGGAGAGCTCACTGACTCTC
AGATTTGTGGTTGGTTCAATGCTTATTATCAACACTCTACTAAATATTAC
TTTCTTCATGTTCACCTTACTCGATTCAATCGATTGTTTCGTTTACCAAC
ACATTTCAGCCAGAATCTCAAGTGAACTGAAATTCTCAATCCCATGGAAA
TTGACGTCCCGTATTGTCTACTTGATCATTGTACTGGCCACCAGTCAACT
CTTACCCTTCTTCGCCCTCGCCAGTGGCGTCATTGGGGCCGTTCTCATCT
CCATACTCGGCTTCATAGCGCCAGTCCTGTTTCATTTAACATTGAAATGG
CACGTCTTGAGCATCCAGCAGCGTTTTGGAGAATTGATGTTGTTGTTCTT
GACCATATTTGTTGGCGCAACGGCCTCTCATTCTTCTTGCTACGAACTTG
TGAAGGAGGTCAAAAAATATCACGGACTTTATAAGCACACTTAAAGGAAA
TTGTTGTATAaataaaatagccagaaaattaaagttgtaattcaaaaaac
atttcgacaaatatttttcagcataagcttttcgttttattaaaaaacat
catcagtgcATATACAATAAAACGAAAAGCTTaagctgaaaaatatttgt
cgaaatgttttttgaatcatAACTAAAAGAAACTAATTTGGTCATTTTGC
GATTTTGGATTATAGTAATAGCAACTGCCTTTGAgcttttattttagttt
ttttatttgataattaGATTTCCAGTTTTCGTGTAGCTCTTCTGTTAAAG
TTGTTTTAAACTTCAGTCTCTTTtggttttcatttttgttgtgATTTTCT
TTGAAGAGTAAGCC Run BLAST on NCBI protein sequence of TCONS_00018711-protein >TCONS_00018711-protein ID=TCONS_00018711-protein|Name=TCONS_00018711-protein|organism=Clytia hemisphaerica|type=polypeptide|length=510bp
MVLTKEQSGLSCDNVNWIPETVHFYNNQDTITHDEKTGLLSYPKKDFLTV
PVHHTSSHKSYQSISPSDSFQESCHSDISTRSILLTYNGNTGTLGGGISL
VMTVASILPFLQGASVFSLPYAFVTAGKAFLPAFLTVNYLATLCSRLLMD
SIYVTSPDGTHRHRIYNSYADLAFACWGQFGAVIMKILNYLFFLLVNVVN
CVLFLRCLDNMLVGQDKVTPFQIQCVLLVLLIPIVLAIKDVSIFSYFGLF
STLSVLLACVMSMFVLIQRSDRWIENFELLPVIDWGKYRASLGITMLTMF
VAPTLPGFESVMAEPKRFPTAINIAFGVSGSFKAVFGVIGALSFGSVTQE
MLATNISESSLTLRFVVGSMLIINTLLNITFFMFTLLDSIDCFVYQHISA
RISSELKFSIPWKLTSRIVYLIIVLATSQLLPFFALASGVIGAVLISILG
FIAPVLFHLTLKWHVLSIQQRFGELMLLFLTIFVGATASHSSCYELVKEV
KKYHGLYKHT Run BLAST on NCBI transcript from alignment at sc0000304:151549..153862 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018711 ID=TCONS_00018711|Name=TCONS_00018711|organism=Clytia hemisphaerica|type=transcript|length=2314bp|location=Sequence derived from alignment at sc0000304:151549..153862 (Clytia hemisphaerica)
GGCTTACTCTTCAAAGAAAATcacaacaaaaatgaaaaccaAAAGAGACT
GAAGTTTAAAACAACTTTAACAGAAGAGCTACACGAAAACTGGAAATCta
attatcaaataaaaaaactaaaataaaagcTCAAAGGCAGTTGCTATTAC
TATAATCCAAAATCGCAAAATGACCAAATTAGTTTCTTTTAGTTatgatt
caaaaaacatttcgacaaatatttttcagcttAAGCTTTTCGTTTTATTG
TATATgcactgatgatgttttttaataaaacgaaaagcttatgctgaaaa
atatttgtcgaaatgttttttgaattacaactttaattttctggctattt
tattTATACAACAATTTCCTTTAAGTGTGCTTATAAAGTCCGTGATATTT
TTTGACCTCCTTCACAAGTTCGTAGCAAGAAGAATGAGAGGCCGTTGCGC
CAACAAATATGGTCAAGAACAACAACATCAATTCTCCAAAACGCTGCTGG
ATGCTCAAGACGTGCCATTTCAATGTTAAATGAAACAGGACTGGCGCTAT
GAAGCCGAGTATGGAGATGAGAACGGCCCCAATGACGCCACTGGCGAGGG
CGAAGAAGGGTAAGAGTTGACTGGTGGCCAGTACAATGATCAAGTAGACA
ATACGGGACGTCAATTTCCATGGGATTGAGAATTTCAGTTCACTTGAGAT
TCTGGCTGAAATGTGTTGGTAAACGAAACAATCGATTGAATCGAGTAAGG
TGAACATGAAGAAAGTAATATTTAGTAGAGTGTTGATAATAAGCATTGAA
CCAACCACAAATCTGAGAGTCAGTGAGCTCTCCGAAATATTTGTCGCTAG
CATTTCTTGTGTAACACTCCCAAATGATAAGGCACCGATGACGCCGAAAA
CCGCCTTGAAGGAGCCCGAGACCCCGAATGCGATGTTGATAGCGGTGGGG
AATCGTTTGGGTTCTGCCATCACGCTTTCGAAGCCAGGAAGCGTTGGTGC
CACGAACATTGTCAGCATAGTGATTCCCAAAGAAGCACGATATTTCCCCC
AATCGATGACAGGCAGGAGCTCAAAATTCTCTATCCAACGATCAGACCTT
tggatcaaaacaaacatggaCATTACACATGCCAACAGGACAGATAAGGT
GCTAAATAAACCAAAGTATGAAAATATGGAGACATCTTTGATGGCCAGAA
CAATAGGGATCAACAGGACCAGCAAAACACATTGTATTTGGAACGGTGTC
ACCTTGTCTTGACCAACAAGCATGTTATCCAAACAACGCAAAAACAACAC
ACAGTTCACAACGTTTACTAACAGAAAGAAAAGGTAATTTAAGATTTTCA
TGATCACTGCTCCGAACTGTCCCCAACAAGCGAACGCTAGGTCCGCATAA
CTGTTATAGATTCGATGTCGATGCGTACCGTCTGGTGAGGTAACATAAAT
GCTGTCCATAAGAAGTCTGGAACAGAGCGTCGCCAAATAGTTCACTGTCA
GAAAAGCGGGTAAGAACGCTTTGCCAGCAGTCACGAAAGCGTATGGTAGA
GAGAAGACGGATGCTCCTTGGAGAAACGGTAAAATTGAAGCTACGGTCAT
TACGAGGCTTATTCCTCCACCGAGCGTTCCCGTATTTCCGTTGTACGTTA
GTAAGATGGAACGTGTTGAGATATCGGAGTGGCATGATTCTTGGAAGGAG
TCGGACGGCGAAATAGATTGGTAACTTTTATGGGAAGATGTGTGATGGAC
AGGAACAGTTAGGAAGTCTTTTTTCGGGTAGGATAATAACCCAGTTTTCT
CATCGTGGGTGATCGTATCTTGATTGTTGTAGAAATGGACTGTCTCTGGT
ATCCAGTTCACATTATCGCATGAAAGTCCACTCTGCTCTTTAGTTAAAAC
CATCTTTACTCAACTTCTTCAAGAAACTTTCTTCATTCGAAAACAACTAG
CAACACTGAACACTCAACAGCATAAATGAAgtgaaactttttcatttttt
gtatcaAGTTTCCAAGCCGCTACTCAATACATCTGCTTCACAGAGAGAAA
GTTTATCAATTATATCTTTCAGATGTTTTGTTTAGCAAAAGATCTTGTAG
AATGGTGAGGTGCGAATAATATTCACACATTTGTTTCTTTTCTGAGAGCA
AAATGTTGAACACCTTTTATACTGTAACTTTATACTAGTACAAAATAGAT
GCAATGTGTTTACATTTTAAGATACCGCGGACGAGCGCATTCGAAGACAA
TACACTCCTGCTACTTTACTTATCAGCTCTCCGCCATAGGTCTTCTACAA
CAACTATAACTAAA Coding sequence (CDS) from alignment at sc0000304:151549..153862 >TCONS_00018711 ID=TCONS_00018711|Name=TCONS_00018711|organism=Clytia hemisphaerica|type=CDS|length=1533bp|location=Sequence derived from alignment at sc0000304:151549..153862 (Clytia hemisphaerica)
TTAAGTGTGCTTATAAAGTCCGTGATATTTTTTGACCTCCTTCACAAGTT
CGTAGCAAGAAGAATGAGAGGCCGTTGCGCCAACAAATATGGTCAAGAAC
AACAACATCAATTCTCCAAAACGCTGCTGGATGCTCAAGACGTGCCATTT
CAATGTTAAATGAAACAGGACTGGCGCTATGAAGCCGAGTATGGAGATGA
GAACGGCCCCAATGACGCCACTGGCGAGGGCGAAGAAGGGTAAGAGTTGA
CTGGTGGCCAGTACAATGATCAAGTAGACAATACGGGACGTCAATTTCCA
TGGGATTGAGAATTTCAGTTCACTTGAGATTCTGGCTGAAATGTGTTGGT
AAACGAAACAATCGATTGAATCGAGTAAGGTGAACATGAAGAAAGTAATA
TTTAGTAGAGTGTTGATAATAAGCATTGAACCAACCACAAATCTGAGAGT
CAGTGAGCTCTCCGAAATATTTGTCGCTAGCATTTCTTGTGTAACACTCC
CAAATGATAAGGCACCGATGACGCCGAAAACCGCCTTGAAGGAGCCCGAG
ACCCCGAATGCGATGTTGATAGCGGTGGGGAATCGTTTGGGTTCTGCCAT
CACGCTTTCGAAGCCAGGAAGCGTTGGTGCCACGAACATTGTCAGCATAG
TGATTCCCAAAGAAGCACGATATTTCCCCCAATCGATGACAGGCAGGAGC
TCAAAATTCTCTATCCAACGATCAGACCTTtggatcaaaacaaacatgga
CATTACACATGCCAACAGGACAGATAAGGTGCTAAATAAACCAAAGTATG
AAAATATGGAGACATCTTTGATGGCCAGAACAATAGGGATCAACAGGACC
AGCAAAACACATTGTATTTGGAACGGTGTCACCTTGTCTTGACCAACAAG
CATGTTATCCAAACAACGCAAAAACAACACACAGTTCACAACGTTTACTA
ACAGAAAGAAAAGGTAATTTAAGATTTTCATGATCACTGCTCCGAACTGT
CCCCAACAAGCGAACGCTAGGTCCGCATAACTGTTATAGATTCGATGTCG
ATGCGTACCGTCTGGTGAGGTAACATAAATGCTGTCCATAAGAAGTCTGG
AACAGAGCGTCGCCAAATAGTTCACTGTCAGAAAAGCGGGTAAGAACGCT
TTGCCAGCAGTCACGAAAGCGTATGGTAGAGAGAAGACGGATGCTCCTTG
GAGAAACGGTAAAATTGAAGCTACGGTCATTACGAGGCTTATTCCTCCAC
CGAGCGTTCCCGTATTTCCGTTGTACGTTAGTAAGATGGAACGTGTTGAG
ATATCGGAGTGGCATGATTCTTGGAAGGAGTCGGACGGCGAAATAGATTG
GTAACTTTTATGGGAAGATGTGTGATGGACAGGAACAGTTAGGAAGTCTT
TTTTCGGGTAGGATAATAACCCAGTTTTCTCATCGTGGGTGATCGTATCT
TGATTGTTGTAGAAATGGACTGTCTCTGGTATCCAGTTCACATTATCGCA
TGAAAGTCCACTCTGCTCTTTAGTTAAAACCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018711-exon-sc0000304-1491911889:151549..153862 | TCONS_00018711-exon-sc0000304-1491911889:151549..153862 | Clytia hemisphaerica | exon |
| TCONS_00018711-exon-sc0000304-1510915933:151549..153862 | TCONS_00018711-exon-sc0000304-1510915933:151549..153862 | Clytia hemisphaerica | exon |
| TCONS_00018711-exon-sc0000304-1575043694:151549..153862 | TCONS_00018711-exon-sc0000304-1575043694:151549..153862 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000304 | supercontig | sc0000304:151549..153862 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR013057 | AA_transpt_TM |
Blast
The following BLAST results are available for this feature:
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