TCONS_00018709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018709
Unique NameTCONS_00018709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length540

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018709 ID=TCONS_00018709|Name=TCONS_00018709|organism=Clytia hemisphaerica|type=transcript|length=540bp
CTGCTTCTAAAACCAAAACGCTTGAGTTTGGTTCCAGATAGAGATGGGTT
ATTTAATTGTCCTGTAAAGAGTTGTGACAGTGAATCGTACCAAACAAAAC
GAGGTTGCAGGAAGCATGTTTATCAGAGGCATGGGtggtattattttttt
gacGAAAAGCGAAATGTAGAGGATGTTTTACCGAAGCAGGTTGTGACATC
TACAACCCTAAAAAGAACGAAGCGGAGTAGGACTAAGGATATACCATCTT
TCAATCGAGACTGCTCATTTGACATTTCTTTTAAATCCTGGCTGTGTAGT
GCCGTCGGTGGCTTTAAAAGCTATAAACAGCCATGTTAGTTGCagagttt
ttaagtttttaaaattttgctgtcaAGATTGCTACCCTGAGTGGGACATA
CCACTAACCATCGTAGATTATTGTGTCGGTTCAATTTCTTCTATCTCAGA
CTTTATTGAATACTTAAAAAAGGATTGGTGTGTTGGCTATGCTGGTTTAA
TAGGATATATGAACTCCTTGTCGCATGTTCTAGATTTTAT
Run BLAST on NCBI

protein sequence of TCONS_00018709-protein

>TCONS_00018709-protein ID=TCONS_00018709-protein|Name=TCONS_00018709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=112bp
LLLKPKRLSLVPDRDGLFNCPVKSCDSESYQTKRGCRKHVYQRHGWYYFF
DEKRNVEDVLPKQVVTSTTLKRTKRSRTKDIPSFNRDCSFDISFKSWLCS
AVGGFKSYKQPC
Run BLAST on NCBI

transcript from alignment at sc0000304:51820..52359

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018709 ID=TCONS_00018709|Name=TCONS_00018709|organism=Clytia hemisphaerica|type=transcript|length=540bp|location=Sequence derived from alignment at sc0000304:51820..52359 (Clytia hemisphaerica)
ATAAAATCTAGAACATGCGACAAGGAGTTCATATATCCTATTAAACCAGC
ATAGCCAACACACCAATCCTTTTTTAAGTATTCAATAAAGTCTGAGATAG
AAGAAATTGAACCGACACAATAATCTACGATGGTTAGTGGTATGTCCCAC
TCAGGGTAGCAATCTtgacagcaaaattttaaaaacttaaaaactctGCA
ACTAACATGGCTGTTTATAGCTTTTAAAGCCACCGACGGCACTACACAGC
CAGGATTTAAAAGAAATGTCAAATGAGCAGTCTCGATTGAAAGATGGTAT
ATCCTTAGTCCTACTCCGCTTCGTTCTTTTTAGGGTTGTAGATGTCACAA
CCTGCTTCGGTAAAACATCCTCTACATTTCGCTTTTCgtcaaaaaaataa
taccaCCCATGCCTCTGATAAACATGCTTCCTGCAACCTCGTTTTGTTTG
GTACGATTCACTGTCACAACTCTTTACAGGACAATTAAATAACCCATCTC
TATCTGGAACCAAACTCAAGCGTTTTGGTTTTAGAAGCAG

Coding sequence (CDS) from alignment at sc0000304:51820..52359

>TCONS_00018709 ID=TCONS_00018709|Name=TCONS_00018709|organism=Clytia hemisphaerica|type=CDS|length=339bp|location=Sequence derived from alignment at sc0000304:51820..52359 (Clytia hemisphaerica)
CTAACATGGCTGTTTATAGCTTTTAAAGCCACCGACGGCACTACACAGCC
AGGATTTAAAAGAAATGTCAAATGAGCAGTCTCGATTGAAAGATGGTATA
TCCTTAGTCCTACTCCGCTTCGTTCTTTTTAGGGTTGTAGATGTCACAAC
CTGCTTCGGTAAAACATCCTCTACATTTCGCTTTTCgtcaaaaaaataat
accaCCCATGCCTCTGATAAACATGCTTCCTGCAACCTCGTTTTGTTTGG
TACGATTCACTGTCACAACTCTTTACAGGACAATTAAATAACCCATCTCT
ATCTGGAACCAAACTCAAGCGTTTTGGTTTTAGAAGCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010463XLOC_010463Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018709-exon-sc0000304-1491911889:51820..52359TCONS_00018709-exon-sc0000304-1491911889:51820..52359Clytia hemisphaericaexon
TCONS_00018709-exon-sc0000304-1510915933:51820..52359TCONS_00018709-exon-sc0000304-1510915933:51820..52359Clytia hemisphaericaexon
TCONS_00018709-exon-sc0000304-1575043694:51820..52359TCONS_00018709-exon-sc0000304-1575043694:51820..52359Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018709-proteinTCONS_00018709-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:51820..52359 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.107184	0.784918	0	0.237461	0.289086	0.11422	0.275603	0.129008	0.0903215	0.407829	0	0.285534	0.142569	0.444177	0.365174	0.960327	0.24638	0.182232	0.227877	0.45365	0.207262	0.518397	0	0.303037	0.345235	0.308114	0.734849	0	0	0.242414
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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