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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018704 ID=TCONS_00018704|Name=TCONS_00018704|organism=Clytia hemisphaerica|type=transcript|length=911bp
ggtagccatttcagcGAGATCACGTCTGATACATTTGAGTAGCGGCCTCT
CACGAAACTGGCGGTTGcgttttgtatccgctgcatctGCTGGATGAGGT
AGGATGGTGCGTTGATGAAAAGAGCATTGCCGTAGTCGAGCTGGCTCAAT
ACAAGCGATTCTGCAAGCTGCTTCCGTAGATGGTAAGGTAGGTAGCGCTT
GATACGACAAAGTGACTTGAGTGTACCATATGCTTTAGACGTGGCTTTTT
TTATATGAGTGTTCCATTTCATATCCTCACTAAACGTTATACCGAggagt
ttgaatgttttgacaCGTTCGATAGTTTTTTCGTCAAGCGATTTTATCTC
GTATTCAAACTGGTGTCGTCTGGCCATTTGTTGTGTCGAGAATAGCACGG
TTTTCGTCTTTTTCGAATTGAATAGAAGATTCTGGGTTTTCGACCATCTC
TGGAGATCTTTGATGTCGTTGTCGATTTTTTCAGTGCACTCTACGAGGTG
TTGGGGTCCTGTATGACGATACAGGCTGGTGTCGTCTGCATATTGCATAC
ACTCCGCATCAGTATTTATTGACATGTCATGAACGTAGATAGTAAATAGA
ACAGGACCGAGGATACTTCCTTGGGGAACACCATTTAGTACGGTAAGTCT
GTTCGATTCCTTGTCATTGATCTGTACGAATTGTAGACGGTTTGATAGGT
AACTTGCCATTAGTAGCAATGCAGACTTTGAAAAGTTAAGATTATGAAGT
TTTTCAATCATTATTTCGAAATCGACTGTGTCAAATGCTTTCGAGAAATC
GGCCATCACAAAAAGAGTGACTTCACCACTATCCATCGCcttgatgatat
cactcttgATTTTCATACATGTTGTGATCGTACAGTGTCCTTTTCGAAAT
CCAGATTGGTG Run BLAST on NCBI protein sequence of TCONS_00018704-protein >TCONS_00018704-protein ID=TCONS_00018704-protein|Name=TCONS_00018704-protein|organism=Clytia hemisphaerica|type=polypeptide|length=303bp
HQSGFRKGHCTITTCMKIKSDIIKAMDSGEVTLFVMADFSKAFDTVDFEI
MIEKLHNLNFSKSALLLMASYLSNRLQFVQINDKESNRLTVLNGVPQGSI
LGPVLFTIYVHDMSINTDAECMQYADDTSLYRHTGPQHLVECTEKIDNDI
KDLQRWSKTQNLLFNSKKTKTVLFSTQQMARRHQFEYEIKSLDEKTIERV
KTFKLLGITFSEDMKWNTHIKKATSKAYGTLKSLCRIKRYLPYHLRKQLA
ESLVLSQLDYGNALFINAPSYLIQQMQRIQNATASFVRGRYSNVSDVISL
KWL Run BLAST on NCBI transcript from alignment at sc0000304:19349..20259 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018704 ID=TCONS_00018704|Name=TCONS_00018704|organism=Clytia hemisphaerica|type=transcript|length=911bp|location=Sequence derived from alignment at sc0000304:19349..20259 (Clytia hemisphaerica)
CACCAATCTGGATTTCGAAAAGGACACTGTACGATCACAACATGTATGAA
AATcaagagtgatatcatcaagGCGATGGATAGTGGTGAAGTCACTCTTT
TTGTGATGGCCGATTTCTCGAAAGCATTTGACACAGTCGATTTCGAAATA
ATGATTGAAAAACTTCATAATCTTAACTTTTCAAAGTCTGCATTGCTACT
AATGGCAAGTTACCTATCAAACCGTCTACAATTCGTACAGATCAATGACA
AGGAATCGAACAGACTTACCGTACTAAATGGTGTTCCCCAAGGAAGTATC
CTCGGTCCTGTTCTATTTACTATCTACGTTCATGACATGTCAATAAATAC
TGATGCGGAGTGTATGCAATATGCAGACGACACCAGCCTGTATCGTCATA
CAGGACCCCAACACCTCGTAGAGTGCACTGAAAAAATCGACAACGACATC
AAAGATCTCCAGAGATGGTCGAAAACCCAGAATCTTCTATTCAATTCGAA
AAAGACGAAAACCGTGCTATTCTCGACACAACAAATGGCCAGACGACACC
AGTTTGAATACGAGATAAAATCGCTTGACGAAAAAACTATCGAACGtgtc
aaaacattcaaactccTCGGTATAACGTTTAGTGAGGATATGAAATGGAA
CACTCATATAAAAAAAGCCACGTCTAAAGCATATGGTACACTCAAGTCAC
TTTGTCGTATCAAGCGCTACCTACCTTACCATCTACGGAAGCAGCTTGCA
GAATCGCTTGTATTGAGCCAGCTCGACTACGGCAATGCTCTTTTCATCAA
CGCACCATCCTACCTCATCCAGCagatgcagcggatacaaaacgCAACCG
CCAGTTTCGTGAGAGGCCGCTACTCAAATGTATCAGACGTGATCTCgctg
aaatggctacc Coding sequence (CDS) from alignment at sc0000304:19349..20259 >TCONS_00018704 ID=TCONS_00018704|Name=TCONS_00018704|organism=Clytia hemisphaerica|type=CDS|length=909bp|location=Sequence derived from alignment at sc0000304:19349..20259 (Clytia hemisphaerica)
CACCAATCTGGATTTCGAAAAGGACACTGTACGATCACAACATGTATGAA
AATcaagagtgatatcatcaagGCGATGGATAGTGGTGAAGTCACTCTTT
TTGTGATGGCCGATTTCTCGAAAGCATTTGACACAGTCGATTTCGAAATA
ATGATTGAAAAACTTCATAATCTTAACTTTTCAAAGTCTGCATTGCTACT
AATGGCAAGTTACCTATCAAACCGTCTACAATTCGTACAGATCAATGACA
AGGAATCGAACAGACTTACCGTACTAAATGGTGTTCCCCAAGGAAGTATC
CTCGGTCCTGTTCTATTTACTATCTACGTTCATGACATGTCAATAAATAC
TGATGCGGAGTGTATGCAATATGCAGACGACACCAGCCTGTATCGTCATA
CAGGACCCCAACACCTCGTAGAGTGCACTGAAAAAATCGACAACGACATC
AAAGATCTCCAGAGATGGTCGAAAACCCAGAATCTTCTATTCAATTCGAA
AAAGACGAAAACCGTGCTATTCTCGACACAACAAATGGCCAGACGACACC
AGTTTGAATACGAGATAAAATCGCTTGACGAAAAAACTATCGAACGtgtc
aaaacattcaaactccTCGGTATAACGTTTAGTGAGGATATGAAATGGAA
CACTCATATAAAAAAAGCCACGTCTAAAGCATATGGTACACTCAAGTCAC
TTTGTCGTATCAAGCGCTACCTACCTTACCATCTACGGAAGCAGCTTGCA
GAATCGCTTGTATTGAGCCAGCTCGACTACGGCAATGCTCTTTTCATCAA
CGCACCATCCTACCTCATCCAGCagatgcagcggatacaaaacgCAACCG
CCAGTTTCGTGAGAGGCCGCTACTCAAATGTATCAGACGTGATCTCgctg
aaatggcta
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018704-exon-sc0000304-1491911889:19349..20259 | TCONS_00018704-exon-sc0000304-1491911889:19349..20259 | Clytia hemisphaerica | exon |
| TCONS_00018704-exon-sc0000304-1510915933:19349..20259 | TCONS_00018704-exon-sc0000304-1510915933:19349..20259 | Clytia hemisphaerica | exon |
| TCONS_00018704-exon-sc0000304-1575043694:19349..20259 | TCONS_00018704-exon-sc0000304-1575043694:19349..20259 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:19349..20259 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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