TCONS_00018686 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018686
Unique NameTCONS_00018686
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length367

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018686 ID=TCONS_00018686|Name=TCONS_00018686|organism=Clytia hemisphaerica|type=transcript|length=367bp
TGGACAATCAAAAAGATCTTTGCATCCTACACAGTGTCCGCGACGTGCGA
GAGTGATATGGTTGTTAAATTTTGATTCAAATCTTCAAgcaattaaaata
aattttctaaattttcataaaGAATTATGTACAAGaataaaaatcataat
ttcaaCTCCCTCCCCTATAAGATCTTCTAAATCGTGCTCTCGTTAAGCAA
GAAGTCTGTAATAATAAATTGTTAGCTTTTCGATGGTATGATTTTGAGCT
ACTAATGCTCTGAAAGTCAATGTGTAAACTATGTGGTACCATCTCTTCCA
AAGGTCAGCTTCGAGAAGCTCTTTCTCGACTGGAAACAAAAAGTTTCAAT
CCAATTTCCCAGTGATT
Run BLAST on NCBI

transcript from alignment at sc0000304:200346..200712-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018686 ID=TCONS_00018686|Name=TCONS_00018686|organism=Clytia hemisphaerica|type=transcript|length=367bp|location=Sequence derived from alignment at sc0000304:200346..200712- (Clytia hemisphaerica)
TGGACAATCAAAAAGATCTTTGCATCCTACACAGTGTCCGCGACGTGCGA
GAGTGATATGGTTGTTAAATTTTGATTCAAATCTTCAAGCAATTAAAATA
AATTTTCTAAATTTTCATAAAGAATTATGTACAAGAATAAAAATCATAAT
TTCAACTCCCTCCCCTATAAGATCTTCTAAATCGTGCTCTCGTTAAGCAA
GAAGTCTGTAATAATAAATTGTTAGCTTTTCGATGGTATGATTTTGAGCT
ACTAATGCTCTGAAAGTCAATGTGTAAACTATGTGGTACCATCTCTTCCA
AAGGTCAGCTTCGAGAAGCTCTTTCTCGACTGGAAACAAAAAGTTTCAAT
CCAATTTCCCAGTGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010450XLOC_010450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018686-exon-sc0000304-1575043694:200346..200712TCONS_00018686-exon-sc0000304-1575043694:200346..200712Clytia hemisphaericaexon
TCONS_00018686-exon-sc0000304-1510915933:200346..200712TCONS_00018686-exon-sc0000304-1510915933:200346..200712Clytia hemisphaericaexon
TCONS_00018686-exon-sc0000304-1491911889:200346..200712TCONS_00018686-exon-sc0000304-1491911889:200346..200712Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:200346..200712 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.866055	1.89184	0.946089	1.64064	0.227492	0.897265	1.97921	2.48139	2.69795	10.3273	1.55559	1.38218	2.45013	0.999104	1.5197	0.953047	1.54474	2.0252	0.482163	1.29096	0.923678	0	10.1312	3.80881
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018686 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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