TCONS_00018685 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018685
Unique NameTCONS_00018685
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1231

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018685 ID=TCONS_00018685|Name=TCONS_00018685|organism=Clytia hemisphaerica|type=transcript|length=1231bp
TCCATTCCACTTGTTTTAATCTTGCTGCGGTGGCAACAATTAGTTTCAAG
TATTCCAAAGAATCTTGATGTATAAGTTATCGACAAAATTTTCCAGCGTT
TTTAGTTCCATAATTAAAGCATTTACTTATGCTTACTTTCCAATCTGTAT
TCTTGAAATCCTTGAAGTTTTGAGAAGAATAAGAacaatctttttcaaat
tttagggcGCAGCGTGATACAAGGAGGAACGGAGAAGAAACATGAAAGTT
TATGTAAACAACGAAGATCCCGAATTAAAATGAAGTGAAATGTCGAGATT
GTCTTCCATCACGTCACAATGAAGAActctttaaaaaatgttatcgAAAG
TAACCCGTGCCGGAAGAACTATGATAAAGACGGCCATTTTTGCTTTGATT
ACCAGGCATTGAACTTGTGCGAATGGTGAATTGTACAGATGAATTCGCCT
ATCATTTCTCTGACGTTAAAAAGAGTTGGAGAGAAGCCgaagatttttgt
caaaaatacgGAGGTCATTTGACGAGTATAAAGGATGCACGTGAAAATGA
TTTTATCGATGCTTATGTTGTTGGCAGGAATTTGCAGAATCCATACATCG
GTGCAGTAAGACGAGGGGTAGGAGCTGCAAGAGTTTGGAAATGGCTAGAC
AATACAACCTGGACCTGGCAGCCATCTATTTGGTATGGGTGGGAGGATGG
TAGTAAAACAACTGCTGATATCTATGGGTATTATTTTGGAACCAAAGACA
AAAAATGGAAATGGACAGCTCAACCACTGGATAAAAGTCCTTTCATCTGC
AAAGTTCCATCATCTGGCATAGATGtgcaaaaagaaaaggaaaaaggcgt
TGAGTTCGTGAAAAAAACGGACTGTTCGAAAGATATAGCTTACCATTTCT
CAACCGTTAAAATGAATTGGACGAATGCAGAAAGTTTTTGTCAAGAACAT
GGAGGTCATTTGACAAGTATCTCAAGTGAAGAAGAGAAAGTCTTTATTGG
AGCCAACGTTGAAAGCAGgaACCTCTACAGACCATACATTGGAGCATTAA
AACAAGGAATTGGTGCAGCACGAAAATGGCAATGGATCGACAAAACATTT
TGGACTTGGGGACCATCTGTCTTTTGGGGACGAAATATTGGGAGCGGAGC
CAATCAGGATAACTATGGTTTTATCTATCGTGAATCTAAATTATTGAGTT
GGATGACGCAACCAAACCTTGAGCGTGCTTT
Run BLAST on NCBI

transcript from alignment at sc0000304:191481..198591-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018685 ID=TCONS_00018685|Name=TCONS_00018685|organism=Clytia hemisphaerica|type=transcript|length=7111bp|location=Sequence derived from alignment at sc0000304:191481..198591- (Clytia hemisphaerica)
TCCATTCCACTTGTTTTAATCTTGCTGCGGTGGCAACAATTAGTTTCAAG
TATTCCAAAGAATCTTGATGTATAAGTTATCGACAAAATTTTCCAGCGTT
TTTAGTTCCATAATTAAAGCATTTACTTATGCTTACTTTCCAATCTGTAT
TCTTGAAATCCTTGAAGTTTTGAGAAGAATAAGAACAATCTTTTTCAAAT
TTTAGGGCGCAGCGTGATACAAGGAGGAACGGAGAAGAAACATGAAAGTT
TATGTAAACAACGAAGATCCCGAATTAAAATGAAGTGAAATGTCGAGATT
GTCTTCCATCACGTCACAATGAAGAACTCTTTAAAAAATGTTATCGAAAG
TAACCCGTGCCGGAAGAACTATGATAAAGACGGCCATTTTTGCTTTGATT
ACCAGGTATGCTAATTGTCTTTCTTCAGCCCTGTAACATTTCTTTATTAG
TTTCTTCCGCCGGCATCTAAATTTTTGTTGACTCCAGACTTATATTTGTC
TTCTCTATTGTATCAACTCCTCATCCGCATCCGAGATATTTTGTAAAACG
TCTGATAAAATTTCCGTTTGCATTCGAAAATTTATGCTACTATTTGCAAA
AAGATTTGTGAAATATGAAATCGATTGATCTCGAAAACTCCATGAGAAGG
AGTTTGGTTCTTCAGAAACACTATCAAATATGGCATGGAGGCTCTCCGTC
GTAGATGATTAAACAGTAAATTTTGGTGTGCAAATTCATTGACTTAGTAA
AACAAACAAGAAGATCTCATACCACTAGATTATTAGTCATGTCAAGTAAC
ACGATATCGTATTTCAACATACGGTGTAAGATTTTGAAACTGTGTTTGTT
GCAATTCCGTGAAAGGAAACATTTTACACCAGTATATGTTTTGATAGATT
TATACAGTTTATAGAATACACTATCTATACACTCCCTTCTCACAGACCCG
GTAGGATCGTTCCAGCCAGTGGGGGTAAGAATAGGACTAAAACTTGATTG
GGGATTTAAATTCCACTGATTTCAAACAGTCAGACAAATTAGTAGGGATG
GGGAAAATAGCATAATATTTTGCAGTGAGGATTAGTTGATTTGATTATTT
TACAGTGGGGACAAAAATTAGACTATAATTTTCCAGTGGGAAGGGGTCCC
AGTGGGTCTGTGAGAAGGGGGTGTATCTATCATCAAGGTGTCTGACTAGA
TTCTTCAGCCCACAAACCAAAACTTGCTAGTGCACTCGGTATATTTTGGC
ATCTTAGCTCCCTCATTCCCTGGTGTTACACTTTGTAACGGAGATCTAAC
CAACGTTATCTTTCGACACCGTCAGCATCATAACGGACTACCGACATCAC
AATAATAATTTTCCATCCCAAAGTGACTCCTCCACGCCTTTACCTGTTTC
TTCCAAAGCCATCAACAAAGTCGATATGTTTTTTTTTGATGTGCGTTTAT
AGAATGCATTTGCTGCTCAAAAATATCAATGCTATGTCCTCTGGTTTGAA
GAAAGGTTATCAAATCCAGATATATGTTCAATCAATTTCTATTTCACGTA
TTTTCAATTCAAGCTAAATTTTGACACTTTGAAAACTGAATCAATCGACG
TAACACCTTAAGATAAAGATCTGTTCTCATTTAATAATGTAACTCGAGGC
GCAAGTTCACTTTCTTATCAGAAATTAATCATTAAAACATGATCTAAATG
ATGGTTTTCTTACAATCCCCAATGATTGCACCTGTGCAGTTGGTTTGGAC
AATTTCCCCTCAACCAGCCAAATATTAAACCAAGTTATTTCTGTTTAGGA
CAATTGTCTTCGAGGACTAAATTTTTTCTTTGGAAAAGGATTTCAAGATT
CACAAGGTCCTTGCATGGAGTGTATTTAACAAATTACATAGAATATGGTC
ATCCGATCTTCTCGAGCAAAAGCTCAAAGTTAAAGTTTTCAAATCTGTTA
TTGAACCTATTCTTCTCTATAGTTCGGAAACATATGGTCTCTAACTCGAA
AATTGGGAAAACAACTAGACGGAACAGATACAAGACTTTTAAGAAGAGTT
AAAAATCTCTCTTGGCATGATAACCCCAACAAAAACACCATATATGGTTC
GCTTAAGCCTATTCTACCATCTTAAAAGCTAAGCGAGTCCAATCCACTGG
TCATTGCCTTCGCGTGACCTCAGAGGTTGTCTCGTCTCTAATTCATTGGA
AGCCCAAACTTGTTCCGCAGAGGTTGAGGAAATTTACTTTCACTGACGCA
GTGAGCAGGGTCACTGGACTTAATTACCGTGACCTGGATACTGCTATGCG
GGACCACGACTCCTGGTGCCAGAGGGTAGAATCCACCGTGGTCGAAAGAT
GATGATGATGTCCTTGAGGGTAATTGTTCGGGGGTAAACTTTCCGGGGAT
GTTTATAACACTTCGAGGCGAAGATGCAAAGACAGCGGAAATTTCATAAG
AATATTTTTGGATCATCACATTCTTCGAATTCGAGTAAATAAGTCAGCTA
GTAGAATGGCTCCAGGGATGGATTGCCTGGTGTGAGGTGACCATGAAAAG
ACAAAAGCCAAGTTTTTCATTAACTTGATACTGTAGATCCGCTTCGATCC
GCTCAACTTTAAAAAATACCCCCTGACTTTACAACGCCTTTCCCGGGTGT
TTATTGGTTCATTGACTTTGTTTTCCTCTGTTACCTTTTTCCAAGCTAAA
AGATCTCAAATTGGTTTTACCAAGAGTCTCCCTTATTAGCCTAAACAAGC
ACAGTAAATTATTAATGAAATCATCTTTTTCTCACAAATTTTAACATGCT
GACTGATTAAAAGATGAAGCAATGTTCTAGATAATAGGACGCTTAAGGGC
ATTAAAAGTTTTTTTATAAGAACACCCAATAGACCATTTTGTCCATTTCC
CCAAGAAATCGCGTGTTTCAGAGTCCGTAAAGCCTCAAAATGTTCTTAAA
TTTTGGTCATCGAAGCAATTGAAGCCATGTTCTTATAATTGTAGATATCA
GCATGCGTTCGAATGATCAAAGATGAAGAAAAGTTCTAGGTAACAGGACG
TTTAAGCGCAATTTCTTTATCCCTTTAGAAGCAAGGCTGAACTGGTTTTA
GAAGCTTATTTAGGAGATCATGGAATTTAAATAATTTGCAATTTAGCAAT
CTTGAAAGCATGCATTAAAGGGACCTATTATGGTATTATCAACAATCAAA
GAAGTAGGAAATTTAGTTTTAAAGAAATTAAGTAGGAAGTTTTTTGGCAT
TAAATCTTTGAAAAAAATTGACCAATTATCAAAATAGGAACATGCAGTGA
TTTCATAAGTATTGTTGAAAAGTGGGAAGTGGGAAACGTACCAAAATAGG
TATAAAGAGGCCTGAAAGATCAGTAAGTGTTCAAAGCACATCATTAGAAG
TTCGAAGATTGTACTTAAAAAAGAAGATTGGTAACTACTTTAACTGTACG
AGGATATATTGGAAGTTTCGTACACTTTGAAGGACCTTTTGAAGATATGG
CAATCATTTCATTGGCGCTTGTAGTGTTTCTCACATATGCTTCGGCATCT
GATTCGGAAGGTGAGAAAACCATTCCACCTCCAGGCTAAGCTTTTTGCTT
TAGAACTACTCTATTTCTAAATGAAAGAAGCAAGGAAAGACACTGTATAA
GTAAGCAAGTGTGTGACCGCAGTTGGAGGTGACCCGAAGGCTCCTCTTTC
GATAGCTATCTACCCGAAGGTAGGGGAGGGCGCCACTCCTTTCCCTGGAT
TTCTCCACTTACCCTTGATCCTTCTCTTTAATTCCTGAGCATCAAGCAGA
GAGGCATCGAGTACCATTTTGGGAATCTTTGGTAGGACCTGGCTGGGGGT
TGAACGCACAACCTTGCGCACCGTAGCCGGATGCTCTACCACTACACTAC
GGTCGCTAAAATGATTCAAAAACATCTATGTTTGAAGTATTCAATATTGA
AATTAAAGAATATTTAAACCAAAAAATATTACTGGAACCTTCCAATAATC
AATAGGGCTCAAATTTTGAGAAATTTAAGAAGAGTTATAAGGTTTTAAAA
ATGGAATCCAATCAAAACTCCATGGACCTTTTCTTTTCAGGCATTGAACT
TGTGCGAATGGTGAATTGTACAGATGAATTCGCCTATCATTTCTCTGACG
TTAAAAAGAGTTGGAGAGAAGCCGAAGATTTTTGTCAAAAATACGGAGGT
CATTTGACGAGTATAAAGGATGCACGTGAAAATGATTTTATCGATGCTTA
TGTTGTTGGCAGGTATGTACAAGTTTCTTAATCAACATTGAACCTGAGCT
TAACAACTACTGACCAAGGATTTATTATACACTGGATATACAAGTACCTG
ATTTTTGCTGATTTCTCGTGTACTAGCTATGTCCGCAGTAATGATATTAT
TGTTCANACACTAGATATACAAGTAACAGATTTTTGCCGATTTCTCATGT
TCTAAGCCATGTCCACAGTAATGATGTTATTGTTCACCCTCCTTCCCTCA
TTAAATGATTTTTCGAAGCATTTTTATTGCATTTCTTATCGAAAATCACT
CATCCAATTCCCAAAAGAGACTTAAAATTTTCCAGTGAGAGTCAAATTCT
TCAAGTTAATTGCTAATTATAAGTCGTTATGATGTTTCAAGTTGTGAGAA
AGATGCAAAAGATGTCTTATGTGTAAGAAATTGAATGCTGACACCGGAAA
TTTTCAAACTTCAACCACAAAAAAACCACCTTGCCACCGCGTGCCTCCAA
AAGATTTTCATACCACAGTGACACCAAGACACTCAAGTCTAATGTTTGTT
ACTTTTATATCTCGTGGTAACAGTTTTGGAAAGATATTCCCAATTGAAAA
TTTCGTGTTACTATAAGCATTTTGTTAGATTTTTCTTGTCTAATGATGTT
TTTCTCACATTAGATCTCACAAATGTATCCGGCTTGGTATTCTAGCCTTA
CTTTCAAAATTTTTTCCCTGCAAAGGTACGAAAAGAAAACGCTAGGGAAC
TTTTTTAAAATGAGATTAATAAGCATTTTTAAAAATCAGATACTTTCGAG
CCGCCGTGACAGTTGTCCTTTGTGGACAAAGCTAGAACAACAATTGTTTT
CTGAAACAAAGGAAATACAATGGTCGCTCTCCACCGTTTTATGAGTCATT
TATCCAAGAGTGAACAATAATATCATTACTGCGGACATAGCTAGTACACG
AGAAATCGGCAAAAATCTGCTACTTGTATATCCAGTGTATAATAAATCCT
TGGTTATTCTAATCACGCTAACATGGTTTCCACATTTTAGTAAAAAGAGT
GCACACTTAAAGCGAAAGTTCTTGGCCTAACAAAAGTTTTGATTTATTTC
GCAGGAATTTGCAGAATCCATACATCGGTGCAGTAAGACGAGGGGTAGGA
GCTGCAAGAGTTTGGAAATGGCTAGACAATACAACCTGGACCTGGCAGCC
ATCTATTTGGTATGGGTGGGAGGATGGTAGTAAAACAACTGCTGATATCT
ATGGGTATTATTTTGGAACCAAAGACAAAAAATGGAAATGGACAGCTCAA
CCACTGGATAAAAGTCCTTTCATCTGCAAAGGTAAAACTCCATTGTTACA
AGGTCCCATTCTCTCCGATCTGCAATTTCTCAAGCATTAATTCACATGAC
TAATTTCAAGCTACCAGACGCACTTTTTGAGTTTCGGTATATTTCATATC
CTTTGTGTCGTACTTGCAGTATTTCCACTGGGAATTAAGATTTCTGCAAA
ATTCGAGTGGCGCCATCCTGGTTTTATCTTATTACAAAATGGCTGTACCA
CAGCACTTTTCCGAATCTTTTGTCATTTTGACGCGTTTGAATGCTGAGGG
GACTCTAAGAAAGAAAGCCGAAAGTACGGTATTGCAAAGGAGATAATCAT
TGTATACAAAAATACCCGTGACCAAGCTTGTAACTAACATTTTTCAATTA
CTTTTACTTCGAAGTTCCATCATCTGGCATAGATGTGCAAAAAGAAAAGG
AAAAAGGTAAGATTTTCTTTATAAAAAAAATAATTTTAAAAATGGCCAAA
TAATACATTTTGGGGGAGGGGATAGAGTCAAAATCAAGGATTACAAAAAA
TAAACAGAAGTTCAAACATTTATCCCAAAAAAGATTAAATTTTAGGAAAA
GAGTCTGGTAAGGGTCCCAAAATTCACAAAATTTCGGGTTTTTTCATGTC
GATTACAGTATAGACCCTATAATTTCATACTTTCAAAAATCGCGCGGGCA
CTCCTCGTCATTTTGCATGCAAACCTAGTACCCTCCCTCCTGGGAAACAG
AAAATCGGACAAAATATTTCTTAATTTTTCAGGCGTTGAGTTCGTGAAAA
AAACGGACTGTTCGAAAGATATAGCTTACCATTTCTCAACCGTTAAAATG
AATTGGACGAATGCAGAAAGTTTTTGTCAAGAACATGGAGGTCATTTGAC
AAGTATCTCAAGTGAAGAAGAGAAAGTCTTTATTGGAGCCAACGTTGAAA
GCAGGTATGCATAACTCCGGGGATTTCTTAACGTTAATTGTAAGAGTCGA
AATGAGAGAAAGTGCTGAATGTGGGTGTAATAAGTGAGAGCTGAGTTGAG
TGGTTTTGGGCACAAAGTCTAACAATTTATTCTCCTAAAATCGTCAAAAA
AAATTCAGAAATTAAAAAAATAAGTACTGTTTAACTGTGGATTGGAAATG
TTTTGGCTGAACAACATTACAATTACTGTGTAACTTTATAGTCGGAATGA
TGCTAAGTATAGTGACAAAAGATAGTCTGTTGCTTAAATTATTTTGAAGA
TTTTTGCATTTGAACTCATCTGAAAAAAAAATTTCAATAGTTTTCAGAAA
GACAAAGGTTCCTACTTTACTTTACTTTTAATTCATTTTTTTATAAAGGA
ACCTCTACAGACCATACATTGGAGCATTAAAACAAGGAATTGGTGCAGCA
CGAAAATGGCAATGGATCGACAAAACATTTTGGACTTGGGGACCATCTGT
CTTTTGGGGACGAAATATTGGGAGCGGAGCCAATCAGGATAACTATGGTT
TTATCTATCGTGAATCTAAATTATTGAGTTGGATGACGCAACCAAACCTT
GAGCGTGCTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010450XLOC_010450Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018685-exon-sc0000304-1575043694:198187..198591TCONS_00018685-exon-sc0000304-1575043694:198187..198591Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1575043694:194330..194501TCONS_00018685-exon-sc0000304-1575043694:194330..194501Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1575043694:193011..193237TCONS_00018685-exon-sc0000304-1575043694:193011..193237Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1575043694:192586..192627TCONS_00018685-exon-sc0000304-1575043694:192586..192627Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1575043694:192088..192259TCONS_00018685-exon-sc0000304-1575043694:192088..192259Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1575043694:191481..191693TCONS_00018685-exon-sc0000304-1575043694:191481..191693Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:198187..198591TCONS_00018685-exon-sc0000304-1510915933:198187..198591Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:194330..194501TCONS_00018685-exon-sc0000304-1510915933:194330..194501Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:193011..193237TCONS_00018685-exon-sc0000304-1510915933:193011..193237Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:192586..192627TCONS_00018685-exon-sc0000304-1510915933:192586..192627Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:192088..192259TCONS_00018685-exon-sc0000304-1510915933:192088..192259Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1510915933:191481..191693TCONS_00018685-exon-sc0000304-1510915933:191481..191693Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:198187..198591TCONS_00018685-exon-sc0000304-1491911889:198187..198591Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:194330..194501TCONS_00018685-exon-sc0000304-1491911889:194330..194501Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:193011..193237TCONS_00018685-exon-sc0000304-1491911889:193011..193237Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:192586..192627TCONS_00018685-exon-sc0000304-1491911889:192586..192627Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:192088..192259TCONS_00018685-exon-sc0000304-1491911889:192088..192259Clytia hemisphaericaexon
TCONS_00018685-exon-sc0000304-1491911889:191481..191693TCONS_00018685-exon-sc0000304-1491911889:191481..191693Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:191481..198591 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.17357	0	0	0	0.0468138	0.0369929	0.470549	0.484769	0.307336	0	0.62216	0.174308	0.496399	0.398769	1.43269	3.74923	0.785896	0.736296	0.67912	0	0.304914	1.38774	0	0.420625	0.896793	1.00744	0	0.291662	1.92649	0.930763
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018685 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top