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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018674 ID=TCONS_00018674|Name=TCONS_00018674|organism=Clytia hemisphaerica|type=transcript|length=1831bp
gAGGCAATACtatcaaacattttcaatgtcattttttttagaacttgttg
atatttttgtcaCGAGAGTATTCTAGAGAGGAGTAAggaattttatcatt
tttctacTGCACCACAATTACATCAAAATGACACCTTATCAGCGCAACGG
TGTCTCTTCAAAGGAGTCAACAATCCTCTCACGTCATCCCTCTTCCTTAT
GAAAACATGTGTCAGTGAAATAAATGAAAGTTCATTAAATTGTCCTTCTT
ATGAAGCTCCTTATATTATGCACCCCTTTGTTAGCATTTATatgataatt
aaaagttattTCCACTTGTAAATGCCTTCTCCatcttcgttcgttcgttc
gttcgttcgttcgttcgttcgttcgttcgttcgttcgttcgattTACCTT
TTCCACTTGTTCCAATTGTTTACTCAGCCTTTTCCTCCatttctttcact
ttctttATGAAACGTTAATTATGCCCACATTCAACCAGTTCATccgttca
ttcattcattcatgcCCATATCCTTTAATTCCACTCACTCTCTCCCACTC
TCTGAGGTCAACCATAATAAACTTTCACGACATGTCACGTGTCCTTATGG
CTTCCACGTGACACATTATGGCTGCAAATGGTCATGAACTGAGGTCACCC
CATTTTAATAGCCCTTAAGCCACAAGGTCATAACATTTTTTTCATCGTCG
ATAAAATCTCGATAAGTCTCTCTTTCATTGGGCACTCCCtgtttattttg
tcaaaattcgaCGATTAAAACTTTAGGCAATGGAAACGAGGTCGTAAAGA
CCAAAGAGGCATGAATGAAAAATATGGacaattttgaaagaattataTTA
CCTATACCTataagaggggggggggatttttcTGAATTTCTTTCACAATT
ATTCAACTATCTACAaccttcaaaaagaaaatttcatatcCAGTGATTTT
CCGTGATAGACCAGTCATGAATTTCACATAATCATATAATAGTGCGGTCC
GATTATACATTCTAGGAATCTAAACCAACAATTGCTCAATTCTTAACCTC
AAAATCCCCTGAAAGTTCTAAAATCTCATTACCCCTTACCAATTCCAAAA
ATCTGGACATCTTAGTTCTTACTTTACAATTTAAAggaacattttttata
agaaacatttacCCTTTACGCCAATTCTActgagattattttttgttaca
cattattttagctcatttttgatattataccatatttatgcttaaaATTG
GCTAATTTCAGGGCTCGAGCCTTAGCAACTCggctgcttataaaaaaatg
tgtactgttttttttacaaggaaataaaaaggaaatttgaattcAACATT
CCCTTCAAAATGTTACTTTAGCTGTTACTGTAGCGCATGTCCAAATAACA
ACAACTAGTTTTCTTATGTACAAATCTAGAACATTGCGAAATTGaaagat
ttattgattttttttcaccgAATGAATGAAATCAGTGGTTAAAGTGCTTT
GATAAAAATCTTAATCAGGTTCAATCATTCAGAATTAATCTCACATTAAT
TACCGTCTGTCATTCAGTATTTACTTCACAAGAATtatagaaattctttt
tttcgtaCACATAGGCAATCGATTGATCACACTGGGTTCATAATCGATTC
TCTCTCTCGATTATTGTGTACTTATTCGAAATACGTTTTAAGGAATGTTT
CCATACTCAAAGCTCTTCATCGTTGACTCGCCCGGGGGCATTGGGtcgac
ggtatgtgcggcgaaaaaaatggctcttagaatcgcacccttaaaGTGCA
GCAAATAAACgacgaaaatcatacccttata Run BLAST on NCBI transcript from alignment at sc0000304:143384..145273- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018674 ID=TCONS_00018674|Name=TCONS_00018674|organism=Clytia hemisphaerica|type=transcript|length=1890bp|location=Sequence derived from alignment at sc0000304:143384..145273- (Clytia hemisphaerica)
GAGGCAATACTATCAAACATTTTCAATGTCATTTTTTTTAGAACTTGTTG
ATATTTTTGTCACGAGAGTATTCTAGAGAGGAGTAAGGAATTTTATCATT
TTTCTACTGCACCACAATTACATCAAAATGACACCTTATCAGCGCAACGG
TGTCTCTTCAAAGGAGTCAACAATCCTCTCACGTCATCCCTCTTCCTTAT
GAAAACATGTGTCAGTGAAATAAATGAAAGTTCATTAAATTGTCCTTCTT
ATGAAGCTCCTTATATTATGCACCCCTTTGTTAGCATTTATATGATAATT
AAAAGTTATTTCCACTTGTAAATGCCTTCTCCATCTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGATTTACCTT
TTCCACTTGTTCCAATTGTTTACTCAGCCTTTTCCTCCATTTCTTTCACT
TTCTTTATGAAACGTTAATTATGCCCACATTCAACCAGTTCATCCGTTCA
TTCATTCATTCATGCCCATATCCTTTAATTCCACTCACTCTCTCCCACTC
TCTGAGGTCAACCATAATAAACTTTCACGACATGTCACGTGTCCTTATGG
CTTCCACGTGACACATTATGGCTGCAAATGGTCATGAACTGAGGTCACCC
CATTTTAATAGCCCTTAAGCCACAAGGTCATAACATTTTTTTCATCGTCG
ATAAAATCTCGATAAGTCTCTCTTTCATTGGGCACTCCCTGTTTATTTTG
TCAAAATTCGACGATTAAAACTTTAGGCAATGGAAACGAGGTCGTAAAGA
CCAAAGAGGCATGAATGAAAAATATGGACAATTTTGAAAGAATTATATTA
CCTATACCTATAAGAGGGGGGGGGGATTTTTCTGAATTTCTTTCACAATT
ATTCAACTATCTACAACCTTCAAAAAGAAAATTTCATATCCAGTGATTTT
CCGTGATAGACCAGTCATGAATTTCACATAATCATATAATAGTGCGGTCC
GATTATACATTCTAGGAATCTAAACCAACAATTGCTCAATTCTTAACCTC
AAAATCCCCTGAAAGTTCTAAAATCTCATTACCCCTTACCAATTCCAAAA
ATCTGGACATCTTAGTTCTTACTTTACAATTTAAAGGAACATTTTTTATA
AGAAACATTTACGCCAATTCTACCGAGATTATTTTTTGTTAANAGGAACA
TTTTTTATAAGAAACATTTACCCTTTACGCCAATTCTACTGAGATTATTT
TTTGTTACACATTATTTTAGCTCATTTTTGATATTATACCATATTTATGC
TTAAAATTGGCTAATTTCAGGGCTCGAGCCTTAGCAACTCGGCTGCTTAT
AAAAAAATGTGTACTGTTTTTTTTACAAGGAAATAAAAAGGAAATTTGAA
TTCAACATTCCCTTCAAAATGTTACTTTAGCTGTTACTGTAGCGCATGTC
CAAATAACAACAACTAGTTTTCTTATGTACAAATCTAGAACATTGCGAAA
TTGAAAGATTTATTGATTTTTTTTCACCGAATGAATGAAATCAGTGGTTA
AAGTGCTTTGATAAAAATCTTAATCAGGTTCAATCATTCAGAATTAATCT
CACATTAATTACCGTCTGTCATTCAGTATTTACTTCACAAGAATTATAGA
AATTCTTTTTTTCGTACACATAGGCAATCGATTGATCACACTGGGTTCAT
AATCGATTCTCTCTCTCGATTATTGTGTACTTATTCGAAATACGTTTTAA
GGAATGTTTCCATACTCAAAGCTCTTCATCGTTGACTCGCCCGGGGGCAT
TGGGTCGACGGTATGTGCGGCGAAAAAAATGGCTCTTAGAATCGCACCCT
TAAAGTGCAGCAAATAAACGACGAAAATCATACCCTTATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018674-exon-sc0000304-1575043694:144134..145273 | TCONS_00018674-exon-sc0000304-1575043694:144134..145273 | Clytia hemisphaerica | exon |
| TCONS_00018674-exon-sc0000304-1575043694:143384..144074 | TCONS_00018674-exon-sc0000304-1575043694:143384..144074 | Clytia hemisphaerica | exon |
| TCONS_00018674-exon-sc0000304-1510915933:144134..145273 | TCONS_00018674-exon-sc0000304-1510915933:144134..145273 | Clytia hemisphaerica | exon |
| TCONS_00018674-exon-sc0000304-1510915933:143384..144074 | TCONS_00018674-exon-sc0000304-1510915933:143384..144074 | Clytia hemisphaerica | exon |
| TCONS_00018674-exon-sc0000304-1491911889:144134..145273 | TCONS_00018674-exon-sc0000304-1491911889:144134..145273 | Clytia hemisphaerica | exon |
| TCONS_00018674-exon-sc0000304-1491911889:143384..144074 | TCONS_00018674-exon-sc0000304-1491911889:143384..144074 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000304 | supercontig | sc0000304:143384..145273 - |
Blast
The following BLAST results are available for this feature:
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