TCONS_00018672 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018672
Unique NameTCONS_00018672
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1652

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018672 ID=TCONS_00018672|Name=TCONS_00018672|organism=Clytia hemisphaerica|type=transcript|length=1652bp
TACAACACGATATATCCTTACTGTTAATCATGGTATCAATATCGTTTTCA
AGTTTTCCAGATTGTATTTCCTTTCGAACGTTTCGacatcacaaaaacaa
aatgtcaGATGCTGATACTACACCCGCAGTCGCTGACTTGAAAATCGAAG
ACAAAGctGAGACAGCCCCAGCTGAAGAGGCACCAGCCGCCGCTGCAGAA
GACACCCCAGCAGCTAAAGAAGCCGCCCCAGCAGAAGAAGCTGCATCCAC
TGACGCCCCAGCTGAAGAAGCTGCAAGCGAAGAAGCAGCGCCCGCTGAGG
AAACGCCTGCCGCCACCGAATAAAACTCACCATTGTGTTTATAGTTGAAT
TTATTATTTACATAATGTATATTTTTCTGTTATAAAGTTTCTATACATCA
ATATCAGTGCTTGATTTGATACCAAAAAGTTGTATATATACAAATTACAT
ATGAAAAACTTCGAATAATaagattaaaatttaaaaaaatactgattttt
ttccatttcaatGTTCCTTTTTAATTATTTAGCCTCGCAGAGGTCTTTTT
TAGGCCTGGCGAATGGCGAAATTCGCTGGCTCGAAACACGAAATAAATTA
GAATTTTTCCACGAATTTTAACCACGCCAGGCTATTTTTGGAACGGAAGT
GGATGTAACACCACAATTTCGTTATATCCACGTCAGTTTGAGAGATTCCC
AATAGCATCGTCTttcttaaggcttggggacacgagaggTTTTTTTCGCG
ttagtgcaatgcaacatgctccatcccacaaacacaaaaaaaaagtgtct
catggtttcttttttgttttgtttcacaggacaaaaagtgagggaaatac
ccaaaagattGATGATCACCTCGATCATCAATGCCATCGGGAGCAAAAGG
ATGACGTTTTTCAATGATCAACTCTACGTATCATCATCTCGGTCCATTTA
AGGGATTTACTTTGACCCAACCAATCATTCCAGAAAATTCCTTTGAATTC
TAAGCCAACATTCTCTTGTGGTTGGtaaaacccgttgaaatttattttag
CGCAATTATTGTACCAAAAACCACCTCTCTTGTAATTGAGATTTCGAGCC
ACGCATGAGCAAGAAAGACAATTGCCTGAGCAAGAAAGACAATTGTCATT
GTCTTTATCTCTTGTCGAGAAAAAATGACCGAAATGATATGAGAGTGAAT
CTGTTCCTTCCATGAAGTCACCACCTAACAATTGATACTTGTCTGCTTCG
CTTTTTACCTCAAAATATCCATATTTGGCATATTTTGTCTCATTCGTAAA
TCTACCGGCGTGGATATACACTTCATGCTTTTCTGAGCTTGTTATTTGGT
GTAGAAATTCGTTACCAAGCCAAAATTCACCCGACGGTTCTCCANTACAC
TTCATGCTTTTCTGAGCTTGTTATTTGGTGTAGAAATTCGTTACCAAGCC
AAAATTCACCCGACAGTTCTCCGAAACCATTTTTATAGCCTTCCCACTGA
GGCTGATAAAAATCAACACTGCCATCCATGCGGCGCTGAAACACTAGCCA
ACCACCACCATCATTGTCCATATTGCATCTGACGTCTTTAAGACCACTAG
CCAATGTGATTTGATATACTCCTGGtgaaagaaatttctttgaatGAAAT
TC
Run BLAST on NCBI

transcript from alignment at sc0000304:137031..146115-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018672 ID=TCONS_00018672|Name=TCONS_00018672|organism=Clytia hemisphaerica|type=transcript|length=9085bp|location=Sequence derived from alignment at sc0000304:137031..146115- (Clytia hemisphaerica)
TACAACACGATATATCCTTACTGTTAATCATGGTATCAATATCGTTTTCA
AGGTATCACAAACTATTTGAGTCTCGTTTTGATTGATCTATTTGACCCCC
TTTCACGCCTTTCTCTAATTTTTTTAGAGGTCATATTTTGAGATATTTTG
TCAAGTGCACACTTTGTTCAAAAACAACAACTAGAATTTATTAGAATGTA
AGAATGTTCAAAACGAAACCATTCGCTCTGGGTACTTTTAATATCACATT
ACACGTATTTTTTATAAAAATTTCCAAAATTTTTAAGCCTTAGGATGTTC
TCAACTTTTTTAGCTTTAAGCCTAAAATATTCTTATTTTCACCATTTTGT
GAACATTTTTATCCATTTTCTTAAGAAATTTGCCATTTTAGAGTGTCTGG
AAAGCCTTAAAATGTTCTTAACTTGTTCTTAACAATTTGGCCATTGAAGC
CTTATGTTCTTATATAGTTTGTTTTTATAAATAAAACCTCTAATTAATTC
CTGAATTTGACTTTGGAAATGTAAAGTAATAAAATAAGGGTCACATATAT
CAATGAATTTCTGTGGTGATTATTCTCGAAAAAGCCAACCTAACCTTATC
AATTTTCCATATATAAAACTCATCATTTTTTTTAAAAAATGTTAAAGTGA
CAAAGTTCATTCATAATCCTCTAACCTAAAGTATTTGAAGCATTTTTACA
TGATGATGAATGATGTACTATGTATTCCACTACTAGTGAAAATTCTTAGT
GAGATTGGAATCAGTAAAACGATTCCACCAATTAAAGTCACGATAAGTTG
CTTAAACAAAGATCACCAAAATGAAAAAAAAAATAAGATAAAGAGGCAAT
ACTATCAAACATTTTCAATGTCATTTTTTTTAGAACTTGTTGATATTTTT
GTCACGAGAGTATTCTAGAGAGGAGTAAGGAATTTTATCATTTTTCTACT
GCACCACAATTACATCAAAATGACACCTTATCAGCGCAACGGTGTCTCTT
CAAAGGAGTCAACAATCCTCTCACGTCATCCCTCTTCCTTATGAAAACAT
GTGTCAGTGAAATAAATGAAAGTTCATTAAATTGTCCTTCTTATGAAGCT
CCTTATATTATGCACCCCTTTGTTAGCATTTATATGATAATTAAAAGTTA
TTTCCACTTGTAAATGCCTTCTCCATCTTCGTTCGTTCGTTCGTTCGTTC
GTTCGTTCGTTCGTTCGTTCGTTCGTTCGTTCGATTTACCTTTTCCACTT
GTTCCAATTGTTTACTCAGCCTTTTCCTCCATTTCTTTCACTTTCTTTAT
GAAACGTTAATTATGCCCACATTCAACCAGTTCATCCGTTCATTCATTCA
TTCATGCCCATATCCTTTAATTCCACTCACTCTCTCCCACTCTCTGAGGT
CAACCATAATAAACTTTCACGACATGTCACGTGTCCTTATGGCTTCCACG
TGACACATTATGGCTGCAAATGGTCATGAACTGAGGTCACCCCATTTTAA
TAGCCCTTAAGCCACAAGGTCATAACATTTTTTTCATCGTCGATAAAATC
TCGATAAGTCTCTCTTTCATTGGGCACTCCCTGTTTATTTTGTCAAAATT
CGACGATTAAAACTTTAGGCAATGGAAACGAGGTCGTAAAGACCAAAGAG
GCATGAATGAAAAATATGGACAATTTTGAAAGAATTATATTACCTATACC
TATAAGAGGGGGGGGGGATTTTTCTGAATTTCTTTCACAATTATTCAACT
ATCTACAACCTTCAAAAAGAAAATTTCATATCCAGTGATTTTCCGTGATA
GACCAGTCATGAATTTCACATAATCATATAATAGTGCGGTCCGATTATAC
ATTCTAGGAATCTAAACCAACAATTGCTCAATTCTTAACCTCAAAATCCC
CTGAAAGTTCTAAAATCTCATTACCCCTTACCAATTCCAAAAATCTGGAC
ATCTTAGTTCTTACTTTACAATTTAAAGGAACATTTTTTATAAGAAACAT
TTACGCCAATTCTACCGAGATTATTTTTTGTTAANAGGAACATTTTTTAT
AAGAAACATTTACCCTTTACGCCAATTCTACTGAGATTATTTTTTGTTAC
ACATTATTTTAGCTCATTTTTGATATTATACCATATTTATGCTTAAAATT
GGCTAATTTCAGGGCTCGAGCCTTAGCAACTCGGCTGCTTATAAAAAAAT
GTGTACTGTTTTTTTTACAAGGAAATAAAAAGGAAATTTGAATTCAACAT
TCCCTTCAAAATGTTACTTTAGCTGTTACTGTAGCGCATGTCCAAATAAC
AACAACTAGTTTTCTTATGTACAAATCTAGAACATTGCGAAATTGAAAGA
TTTATTGATTTTTTTTCACCGAATGAATGAAATCAGTGGTTAAAGTGCTT
TGATAAAAATCTTAATCAGGTTCAATCATTCAGAATTAATCTCACATTAA
TTACCGTCTGTCATTCAGTATTTACTTCACAAGAATTATAGAAATTCTTT
TTTTCGTACACATAGGCAATCGATTGATCACACTGGGTTCATAATCGATT
CTCTCTCTCGATTATTGTGTACTTATTCGAAATACGTTTTAAGGAATGTT
TCCATACTCAAAGCTCTTCATCGTTGACTCGCCCGGGGGCATTGGGTCGA
CGGTATGTGCGGCGAAAAAAATGGCTCTTAGAATCGCACCCTTAAAGTGC
AGCAAATAAACGACGAAAATCATACCCTTATAGTGCTTTTCTCTCAAATT
TTCAACTCTTTTAGAGCAAAAATATTAGAATTTTCGAGAAAAAATTAACA
ATTTCTCCTGGATTTCCTGAAATCTTCCACCCTTACAGTGCATTTCGCCG
TTCATACTCATTAGTCAATTTGCCTGAATGCCCCTCCACGTCGGGGTGAC
TCGCTATCATGCATCTTATCACAGAACGTTTTCTTTATTTTGCAATCGAT
TTCCTTAGATAACCATCTTTCAAGCCACATATAGTATGTCAGCTTACGAA
TCGCTTGGTCGTAAGCGCTTATTAAAGTTTCAACCAATGAATGAAATAAC
TTTTATGTAAATAATATGAATGAAATGTGACTGAAGAAAATATCCTAAAG
TGTTGGATAAACAGGATTCGAATGATTTTGAAACATTTCGATAGGGGTGC
AGATCGCTTTGCCAGTATCACTTTCACCATATCTACAAAAATTCTATTAT
TTACGTTTTTTTCAAAATAGTCGCTTAGTGCTCAATACTAGTTTTTTGAA
AGGGACCCAATAATTTTTACCTCATTTGACACTCTTGTAGTAAATAAATT
CCCTCTATAGAAGTTGAAAGACTTTTGGATATTTCCAGTCTTCCAGCCAG
CTAATTTTAGGCTTTAAGAGACGGTCCATGACTCATATATTTGATCTATT
TTTTCTTTACAAATTTACATTGCTCTTTACTCTCTTCCAATGAATATTGG
AAATTTTGAAAATAGTTTTTCAAAGAAACAGAAAAAAAAATTCATCCAAC
AATCTTGATCAAGACAGAGGTTGTTTGAAAATTTCAATGTCTATGTCTCT
CAAGTAGACATTTAGAAATTAGGGGGAGTTTTTTTTCACTGCAGTTGGAC
ATCGCTGGTGAAACTTTATCCTGGTTCGATAATGTCTTTCTTGTTTCCTG
GACAAATATTTTATATTACTTTACAAATATTACAGCCTCGATCCAAAAAA
ACCCTAAAAATATTCTTCTTTTTTTTTTTAATTCTTGCCATTCTTTCTTG
GGGTAGAATCTACAAAGCTTCTCTTCTTTTGTGTATATCTCCAAGAAAAA
CTTTTGAAACGATTTGAAACTGTCTAAAAGAAATTTACCAGGACATCATA
AAATGCTGGGAAATTGGGTCCTGGGTAATGATACAGGGTGTAAGTAGCAA
GAAGCCTCCTCATCCCGAGGGAGGGGGCACTCGATTTAAAAACAACCATA
TTTGTGGCCCAAAATTAGGCCTTTAAGATCGGAGCCTTCCAGTGAAGAGG
AAATTGAGTGCCCTGTCCTTCTCCCCGGGGCTCCTAATTTTATTTCCATT
CCTTTTAAATGTCTTATTCGTGCAGTTACGAGACAGTTTGTTCGAGTTTC
CTGAAAGCTTTTTGATTGAAGAGTCCCCTCTCAGACATGAATGTCGGTTA
AAGATTGATGGAGAACAAAATCTTAAGACAATTAATTAACTTTTTCATTG
AGATTAATAAATGAGCTAAACACACAACAAAAACTAAAAATGACATTAAA
TTTTTATGTAAGACAGGTTTTGTCTATACGGTTTCATCTTTGAAAGGAAT
TCTGTCCGCAGCCTACACACGGAACATCCATATAACGTTCATCCAATGTC
TTGATCTGTATGTACCAGTTATTTCTGACTTTCTTTATTTCTATGTTTTG
ACAGAGTATGGTTTCTCTAAAGTGACCGCGATTCTTTTTGAAAATATGTC
AATCCAATTTGTCAAGTCAAGAAAAGAAATTTCCAAAATCTTTAAATTCG
CTTTCTATCCTCCCTCAAGACAAAAATAATATTTTCTCTCGTTTAAAAGT
AGAATTTCAAATATTCTTACCTGAAAAGCTATCATTAGTATTTTTACACA
ATACACGCTTATTTTATAAGAACCAGTAAATTTTTTGAAATATTAATGCT
TAAATGTTCTTACGATGTTCTTAAAAATGGGTTTAAAATCTTTTAAATCT
GATAAAATCAGCACTTTTTTAATAATTTTGAAATTTGAGGCTCAGATTGT
TCTCAATTTGTTCTTAGGTTTTGGCCAATTTCCAGCCTCGTGTGCTATAA
AATTGTTCTTATAATAAAAGCGTGTATTTGTAAATTTTTAAGCAACGAAA
TTTCGAATGCACTTACAGTATGTGGCCCCCAAAACGGCGATCAAATTTGA
AATTTCTCTCAAATCTAGAGGAAAAGAGATTTTACAAAAATTTTTGCTGC
ATGAAAACCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATGGAT
GTAAAATTTATGATTTTTATGAAATATTTCAAGATTTTCGATATTGCAAA
GTCCAAACTGAAAATTTAGAAATTTTCAAAATGACAATTTTAATTTAACA
ACGTCTTAATCAAGTTTTTGAAAACAAATTTCTTTTGAAAATAGTTCCAT
TTATGTATGGAATAAGCTGTGAAAAGTTTAGAAAAAAGGCTTAACTGAAA
CTGAAAATATTAAGCTTTAAAGATATTTTTCTCCTATGTTTTGCAAAAAA
ATGACAGAATTTGCCGTTTTTGCTGATTCAGCGAAAAATTTTATNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNATTAACTCAAGGTGATAGGAATAG
AATTCCAAGATTTTTTGCTTTTTCTCATATTTAGAATTTTCGGTTTTGTC
AATGCTGATTCTAGGGCTCCAAAACACTGGTTGACCTTCAAGATGCTATA
TCTTTTACCCAGCCTCTAAAGTCACAGATGTATTTGCATTTTCTGTCATT
TTAATGAAAACCTTCGTTTTGGGGGCCGTCTCCGTTTTGGGGGCCATATA
CTGTACGTGAATATGAATCTAAATTGATTTTTCCCAATTTTATCAAAATG
ACTTTGGAAATTGAATTTTTAGACTTTCAATAACCTTAATATTTACATAT
TAAATTGAGTGAAGTAGAAGTAGCTCATTGTCAACCTTCTCCAAGTGTAT
CCCAGACTTGATTTACGTTACTGATGGACGCAAAAGTCGATAATACGCAG
GGGACGAGGCTGGCTTATTGAAGACTTATCAAAATGATGTTTTTCGCACC
CAGAAAGTGAATGGTGTATCGAATTAGATCATCCTTGCACACCTAGTTAG
TATTTCCCTCTCAAGGAGTAACATTGAAATTTCAAGGAGGTGTTTTTAAA
ACTAATAATCTGAGGTTTGAGATCATTTTATAGTTTTTAGGTGGTTTCAA
AGTATGGTTTTAACACCTACTTCCATTTGCGTACATATATGTGTAAGAAA
TTTCCATGTCCAAAAGTTTCCAACACTCAGTAAGTTTTAGAGAGAGAGAA
TCACCCAAGTATTGGAATTTTAATACGTTGATTATTGTGGTATTTCACAA
ATAGTTAAAAAGAATAAAAATTCATACATCTTTCTCTCTTCTTGTTCTTT
AAAAAAGATTGGTATCAGTTCAGTAGATGCGCTTTAGATCGAACGCGGTC
ACTACTAACTTGTGGATGGTGACACAACATCTTATGCACATCCAGTGAAC
TTTATACTGGATCAAGATTCTTACGAACAAAAGAAAAAAACGCAAAACAA
TAACAAACGAATATTGATAATTGAAATTTTTAACTTTTGATATAAATCCC
CCGACTTGCTGAACCCTTGCATAAAGGACTCGTATTAAAGCCCCTTTATT
GATGTGATCTCTGAACAAGATTAGAATTTTTTAAAATGGATTCAGGGGGT
TGTGTTCATGAATAATTGAGTGTGTATAAAAGAGGAGCTTGGATGGTTCA
TAAGCCTGGTAGGCGTTGTCAACTCAGTACACTTAAGGTGGGTAGATGAA
GTCAAATTTTTACTACTTTTAAATTTTCAGAGCGTTGGCTTTCTCTGAGA
GACTTTAAAAATTCGACATTTTTCTTTGTTTGAAGATCCCATCTATTTGG
GAATATTTTTATCAGTTGTTTTTCCTTGATGAGATGTTGAGAGGTTTACT
GTCACTCAGAGGAGACAGCCAGAAATCTTTATGATGTTGTTGTAAAATAA
TAATTGGATATCAGTCAGTACTGTTTTAAGCGATTATTTTTGTTGAAATA
ATATCTTATCACTGAGGGTTTTTTCTGCTCTTAGAACTTGAAATTTCGAA
ATTTCAAAACTGTGAATATCCACAGAGTTCCATATTCCAAAATTTTTTTG
AACTTAGCTATTTCTTTATATAATTTCTCCCCGTTTTCCTTTCAGTTTTC
CAGATTGTATTTCCTTTCGAACGTTTCGACATCACAAAAACAAAATGTCA
GATGCTGATACTACACCCGCAGTCGCTGACTTGAAAATCGAAGACAAAGG
TACATTTTCTGTTTTCTTTCTCTCCGTATGATGAATAGTCAGTCCATAGT
CAACCCCCTGAATTATTGTACTGTAATTTCATTTTGGATTTTATTCGAGT
GATTTTTTGATATTCGGCTATATGAATTTTTAATTTTAGCTGAGACAGCC
CCAGCTGAAGAGGCACCAGCCGCCGCTGCAGAAGACACCCCAGCAGCTAA
AGAAGCCGCCCCAGCAGAAGAAGCTGCATCCACTGACGCCCCAGCTGAAG
AAGCTGCAAGCGAAGAAGCAGCGCCCGCTGAGGAAACGCCTGCCGCCACC
GAATAAAACTCACCATTGTGTTTATAGTTGAATTTATTATTTACATAATG
TATATTTTTCTGTTATAAAGTTTCTATACATCAATATCAGTGCTTGATTT
GATACCAAAAAGTTGTATATATACAAATTACATATGAAAAACTTCGAATA
ATAAGATTAAAATTTAAAAAAATACTGATTTTTTTCCATTTCAATGTTCC
TTTTTAATTATTTAGCCTCGCAGAGGTCTTTTTTAGGCCTGGCGAATGGC
GAAATTCGCTGGCTCGAAACACGAAATAAATTAGAATTTTTCCACGAATT
TTAACCACGCCAGGCTATTTTTGGAACGGAAGTGGATGTAACACCACAAT
TTCGTTATATCCACGTCAGTTTGAGAGATTCCCAATAGCATCGTCTTTCT
TAAGGCTTGGGGACACGAGAGGTTTTTTTCGCGTTAGTGCAATGCAACAT
GCTCCATCCCACAAACACAAAAAAAAAGTGTCTCATGGTTTCTTTTTTGT
TTTGTTTCACAGGACAAAAAGTGAGGGAAATACCCAAAAGATTGATGATC
ACCTCGATCATCAATGCCATCGGGAGCAAAAGGATGACGTTTTTCAATGA
TCAACTCTACGTATCATCATCTCGGTCCATTTAAGGGATTTACTTTGACC
CAACCAATCATTCCAGAAAATTCCTTTGAATTCTAAGCCAACATTCTCTT
GTGGTTGGTAAAACCCGTTGAAATTTATTTTAGCGCAATTATTGTACCAA
AAACCACCTCTCTTGTAATTGAGATTTCGAGCCACGCATGAGCAAGAAAG
ACAATTGCCTGAGCAAGAAAGACAATTGTCATTGTCTTTATCTCTTGTCG
AGAAAAAATGACCGAAATGATATGAGAGTGAATCTGTTCCTTCCATGAAG
TCACCACCTAACAATTGATACTTGTCTGCTTCGCTTTTTACCTCAAAATA
TCCATATTTGGCATATTTTGTCTCATTCGTAAATCTACCGGCGTGGATAT
ACACTTCATGCTTTTCTGAGCTTGTTATTTGGTGTAGAAATTCGTTACCA
AGCCAAAATTCACCCGACGGTTCTCCANTACACTTCATGCTTTTCTGAGC
TTGTTATTTGGTGTAGAAATTCGTTACCAAGCCAAAATTCACCCGACAGT
TCTCCGAAACCATTTTTATAGCCTTCCCACTGAGGCTGATAAAAATCAAC
ACTGCCATCCATGCGGCGCTGAAACACTAGCCAACCACCACCATCATTGT
CCATATTGCATCTGACGTCTTTAAGACCACTAGCCAATGTGATTTGATAT
ACTCCTGGTGAAAGAAATTTCTTTGAATGAAATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010446XLOC_010446Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018672-exon-sc0000304-1575043694:146064..146115TCONS_00018672-exon-sc0000304-1575043694:146064..146115Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1575043694:138667..138770TCONS_00018672-exon-sc0000304-1575043694:138667..138770Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1575043694:137031..138526TCONS_00018672-exon-sc0000304-1575043694:137031..138526Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1510915933:146064..146115TCONS_00018672-exon-sc0000304-1510915933:146064..146115Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1510915933:138667..138770TCONS_00018672-exon-sc0000304-1510915933:138667..138770Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1510915933:137031..138526TCONS_00018672-exon-sc0000304-1510915933:137031..138526Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1491911889:146064..146115TCONS_00018672-exon-sc0000304-1491911889:146064..146115Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1491911889:138667..138770TCONS_00018672-exon-sc0000304-1491911889:138667..138770Clytia hemisphaericaexon
TCONS_00018672-exon-sc0000304-1491911889:137031..138526TCONS_00018672-exon-sc0000304-1491911889:137031..138526Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:137031..146115 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0.0752452	0	0	0	154.728	136.397	0	0	68.2282	41.2147	0.0013225	7.07258	72.1325	89.1499	0.655797	0.1675	0	0
Blast
[Close]
BLAST of TCONS_00018672 vs. Swiss-Prot (Human)
Match: TENX (Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4)

HSP 1 Score: 93.5893 bits (231), Expect = 1.025e-19
Identity = 56/157 (35.67%), Postives = 81/157 (51.59%), Query Frame = -2 
Query:  926 GEPSGEFWLGNEFLHQITSSEKHEVYIHAGRFTNETKYAKYGYFEVKSEADKYQL-LGGDFMEGTDSLSYHFGHFFSTRDKDNDXXXXXXXXXXXXXCVARNLNYKRGGFWYNNCAKINFNGFYQPQENVGLEFKGIFWNDWLGQSKSLKWTEMMIR 1393
            G  SGEFWLGNE LH +T +  + + +   R  +E  +A+Y  F V S A+ Y+L L G      DS+SYH G  FS RD+D +              ++  ++Y RG +WY NC   N NG Y       ++ +G+ W  W G   S+ +TEM +R
Sbjct: 4092 GNISGEFWLGNEALHSLTQAGDYSMRVDL-RAGDEAVFAQYDSFHVDSAAEYYRLHLEGYHGTAGDSMSYHSGSVFSARDRDPN-----------SLLISCAVSY-RGAWWYRNCHYANLNGLYGST----VDHQGVSWYHWKGFEFSVPFTEMKLR 4231

HSP 2 Score: 89.7373 bits (221), Expect = 1.618e-18
Identity = 37/58 (63.79%), Postives = 46/58 (79.31%), Query Frame = -1 
Query: 1413 DVRCNMDNDGGGWLVFQRRMDGSVDFYQPQWEGYKNGFGELSGEFWLGNEFLHQITSS 1586
            +V C+M+ DGGGWLVFQRRMDG  DF++  WE Y +GFG +SGEFWLGNE LH +T +
Sbjct: 4055 NVFCDMETDGGGWLVFQRRMDGQTDFWR-DWEDYAHGFGNISGEFWLGNEALHSLTQA 4111
The following BLAST results are available for this feature:
BLAST of TCONS_00018672 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TENX1.025e-1935.67Tenascin-X OS=Homo sapiens GN=TNXB PE=1 SV=4[more]
back to top