TCONS_00018667 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018667
Unique NameTCONS_00018667
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1088

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018667 ID=TCONS_00018667|Name=TCONS_00018667|organism=Clytia hemisphaerica|type=transcript|length=1088bp
ACTgcagaagaaaatgaaaaacttttaaatcaaaGTCTTCTTGTGAATAA
AGAGAATAATAATATACAGCTTATCATTCCTCAGCCAGAGAAGAAATTTA
AAGGAGTTGAGAAAGTTGCAGCTCAATCAATTTTAAATGAGGTTAACGGT
CAATTTCAAACCATCTTTAATCAAAGTTTTACCGATGTATTGTGTAAGTT
AAAGGGTACCGATGTTGAGAAGAAAAAGTCACCAGCTGAAAAAAAGAAGT
ACATTCGAAAGATCCAGGGCAAGGCTAAAGCTTCTCTAGAAAAGAATTAC
CAAGAAAAGCAAGCTGACATGATATATGGGACCAGAACATCTTTAAGCAA
ATACGATAGCCAACGACttgcattgaattttgaatcgCCAGCTTCGGCAG
TTTTGTGTAACAACAAAAggaaacaAACTGAGATAGAGACTGGTAAAAAG
CGACGTAAGCACAAAAAACCAGCTGATTTTGACTTTGACGGTGATGCTAT
GGTAAATGAAGTTGAGAGTATGCCTGACAATGCAAAGGTGGTGCTTCATA
CCCCAAGCTACCTACAGGTAAACAGTTACGGAAACAGATGTCAGATCGAG
TTGAGAAAGGACAATATTTGCTTGGGGACCTAGTCGAGGGAAAAACGTAC
ACCAAATTGGTCCAAGTTGATGGTGAAATCGTTAGGGAAAGCTTTATTAT
TGAAGCACGACGTATTCCCATGGAAGAGATTCGATCGAGGATTTACAAAG
AACATTCCGAGCTAGgaaTTCTACGCtcaaaaaatcttcttaaaCGTTAT
TTGGTTGTCTGGGGAGATCATTCCTCGCACTTGGCCCATGGTGTGCTTTT
GTATACGGTGAAGGTGATTTACTCCAAATCGATATTTTATACGGACGAGG
AGATGCAACAAAGGTTTGGCGTGGTAGTCAATGTGCAAAGTGTGGTGGAG
CAGCCCCAAATATACATATTTGCTCATTGTGGGGATAGTATCGCAGAAAA
GCTGTCCTATATAATGTTTAGACGGGAAGATATTCTGAAACTCAAACTAA
CGATGTTTTTTGGAAGTATTGAAGTTCAAGACGTCATG
Run BLAST on NCBI

protein sequence of TCONS_00018667-protein

>TCONS_00018667-protein ID=TCONS_00018667-protein|Name=TCONS_00018667-protein|organism=Clytia hemisphaerica|type=polypeptide|length=210bp
TAEENEKLLNQSLLVNKENNNIQLIIPQPEKKFKGVEKVAAQSILNEVNG
QFQTIFNQSFTDVLCKLKGTDVEKKKSPAEKKKYIRKIQGKAKASLEKNY
QEKQADMIYGTRTSLSKYDSQRLALNFESPASAVLCNNKRKQTEIETGKK
RRKHKKPADFDFDGDAMVNEVESMPDNAKVVLHTPSYLQVNSYGNRCQIE
LRKDNICLGT
Run BLAST on NCBI

transcript from alignment at sc0000304:64137..68948-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018667 ID=TCONS_00018667|Name=TCONS_00018667|organism=Clytia hemisphaerica|type=transcript|length=4812bp|location=Sequence derived from alignment at sc0000304:64137..68948- (Clytia hemisphaerica)
ACTGCAGAAGAAAATGAAAAACTTTTAAATCAAAGTCTTCTTGTGAATAA
AGAGAATAATAATATACAGCTTATCATTCCTCAGCCAGAGAAGAAATTTA
AAGGAGTTGAGAAAGTTGCAGCTCAATCAATTTTAAATGAGGTTAACGGT
CAATTTCAAACCATCTTTAATCAAAGTTTTACCGATGTATTGTGTAAGTT
AAAGGGTACCGATGTTGAGAAGAAAAAGTCACCAGCTGAAAAAAAGAAGT
ACATTCGAAAGATCCAGGGCAAGGTAAGTACCAAAATTAGCTTTGTTTCA
GAGGGGTAATTTTTAGATAATTACCTCATAAATCGTTTTACATCAATATT
ATTGTCGCTCTGTCTTAAGTTGACCTTACTTTTAGGTTCTAAATAAATGT
CTCCCCCTTGTTAATTTTTGGAAAATTTTCCAACCCCCCCTCCCGGACCT
TATTAGGACCCCTGTTTATTAATTTTTAAGAATATTTTCTGCTGTCAAAG
AGAAGGCCCCTTATTTTGCTCAAAATAGCCTGATTTTAGCCTTTATTTAC
CTTACTTTTGGGTTTTCAGAGGTACACTTTTCAACCCCCCGGCAATTAAG
TCCCCCCATTTATTAAATTTTGAAAGTTTTATATTCAAACCCCCCCCCCC
ACGTTTATTTGGAACCTAAAGGAAGGAAAAATTTTTTAAGGACCCCCCCC
CCCTTTTTTTAATTTTTGAATTTTTTTTTTTCAACCCCCCCCCCCCCGTT
TATTTGGAACTTAAGAGTAGGTAATATTTTTTAAGTGCAGCTCTCACTAT
ATTCTATTTACTAAAAGTCTACTCTGAATTAAATTTTGATTATACTTTTG
AAAATCAAACTTTTGACTAAAGCATAGGTATTACTTTGGTGTGTTATATT
TTGAATTTTTACTCCATTTTTTATCTTTTTTTCCAGGCTAAAGCTTCTCT
AGAAAAGAATTACCAAGAAAAGCAAGCTGACATGATATATGGGACCAGAA
CATCTTTAAGCAAATACGATAGCCAACGACTTGCATTGAATTTTGAATCG
CCAGCTTCGGCAGTTTTGTGTAACAACAAAAGTAAGTGTTTTAACTTTCA
CTACCTAAAGTGCTGTGTGGAGGATATTGATAGTTTATTCTTTTCTTTAA
TGTTTTGTCATCTTTTATTTTCAGATCAAAACATTCAATAGCACATAAAA
TTAAAAAGTAATTACAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNATTAAAAAGTAATTACAATTGTTTCATCAATTAT
TGAATGATCTTTATCCATGTTTTGATCTTGTCACATTGTTGGATTATCAT
TGGCTTACTGACACAGTAATCAACACGTAATCAACATGGTTGTGCTCGAT
TATCCGCTACCAGGATGTGGTTTCCAGACACCTGATCATGACGTCATTGG
TGCAGCCGCTATCCTCAACCTTCAGTCACACACACACATTATGAATCCGG
TACCACAAGCTGCTCCACGACCCAGTGCCCCAAAGCTGATCCGACCAAAG
ATTCAGGACAACTCAACGTCTGAGGATTGGAATACCTTCATTAGACGCTG
GGACACCTTCCGCATTGGCTCTGGAATCACCGACCAAGCTGCTTCCACTC
AAGAAAAATACATTTTTTACTAGTAAATTATATTTTTTTAAATTGTAGTC
ATGTTACCTATATTCAGGAAGCCAAAGTTGAAAAATATTTAGAACCATGT
ATTCTGCTATTTTTGATTTATAACTCTGATTCACTGTTTATTTGTAGGGA
AAGGTAAGATAAAAAAAAAAACAGTGCAATTTCAAAATTGTTGCTTTTTT
TCTTCATTTTTTAAGGGAAACAAACTGAGATAGAGACTGGTAAAAAGCGA
CGTAAGCACAAAAAACCAGCTGATTTTGACTTTGACGGTGATGCTATGGT
AAATGAAGTTGAGAGTATGCCTGACAATGCAAAGGTAAAGGAGGCTTTTG
AAATTTTTGTAAATTTTATCTTTTATTCACTATTACCTCAGTTGAAGAGA
AACAGTGATAAGGATTGTCAAATAAAATGCTCCAGTCTAGTATGTTACCG
GCCACCGAGTTCACTACCTGTGGGTGAACCAGCTTTGGAGCGGAAAGGGT
AGCGAGGTTATAATTTTAAATACCCGGCTATTCTACTAAAGGTAACAATT
TATGTAATCATCATAATGTAAATAATTACATCTGTGGTGGTTACAAAACG
ACTCATATCTAAGTTGGATTTTGATACATAAGAGATTTTTTCCATTAAAT
TCTTCTTTAATCAAATCCATAAATTGAAAACCAAATAGCTTAAACTTTTG
TTAGACCAAAAATACACCCACATCTGTATTTTCAATTTTTTATTTTTTTG
ACCTATTTTTAACTTTCAGATAAATTTTACTGAGATTGCCGACAAGTACA
AGATTGTTGATGGTAATAATGGAAACAGTATTGTGATAGAGTATCTGAAA
AGTAGAAATGTAAACTTATCCAGACTACACAATCCTTTTGTCAACTTAGA
CAAATCCAGAAGAGCTTCGTTGAAGTTTTCAGGTATCTAGTCAGCTAATA
AACAGATTTTATTGACCCCAGGTATTTTGAGGAATAAGGATTAATTAGAA
TGAAACTTTGGGGAGAATCACACATTTTATTTCAGGACATAAGAGCAGAA
GTCTACAACTTTACTAAAAATCCATACTTTTATTTCGCTGAGTTTAGTTG
AAAATAATGTGAATTTAGGCACACTTATCACTTTAGTCTTGCTTGTTTAG
AAGTAAATTATGAGTAATAAAATATCATTACTTAGTATCTTTAGCTTTGA
AGTTTTTTTAAAATTACTAACTGGTTTTTATTCTAATATGACTTTCTTAT
GAGTCTCTAGGTGAGCTTTTTTTAGTCCAACATTACTCTAGTTCATTTAA
TTTTACTATCATTTTAAACCTAATTTTACTAAAATGGTTATCCTTTGGTT
ATCATTAAAGGCTGCACCATCCTAGGGTAGGTCACCTTGAGTGCTTTCCA
GCGGGCTATAAAAGGAATAGATTTAGTTCTGAAATTAAATTTCAAATTAT
TAAAGACAGCATGGGCGCAGCACACATTTAAGGGGGGGGGGGGCAAGCAG
TTACTCCAGAACACTATTTGTACTAACTGATTTTTTGAAAAATCTGTACC
CCACCACCACCCTCTGTCACTTAGTACACTGTGTACTAACTGATTTTGAG
GGCAAATTTCAATACACCACCCCCAAAATAACCCAAAATCGCATTTTTGG
CCCATGCACTTTTCAAAATTTGCCTTTGTTGAAAATATGTTAGAAATTAT
ACATGTTTTAGAAAAAGATGTTTTTTTTATTTTCAAATTTTCAAATTATT
TTTTTAAGATTGAAAAATTTCTTTTGTATTTTCCTCCCCAAAAGCCCAAT
TTTTTCAGAAAAAAATCGATTCTTGGCAGTTAGTACACAAATTTGCTGTT
AATCGCCAAGCATACCACCTGCTTTTGCACTTAGTACACTGGGTCTACTA
ACTGCATTTTGCTAATTTTGAAAATGGACCACCACCATACTAAATGTCAT
GGGTATCATGTACTAACTGCTTGACCCCCTGCACATTTTAGTATTTCTTA
TCAGATCAAACTGGTCCTTATTGAAATTGCAGGAACAAATTTAGATTTTA
AAACTGTAAACCCCTATTCTATTCTAGGTGGTGCTTCATACCCCAAGCTA
CNTATTTTAGAACTGTAAACCCCTATTCTATTCTAGGTGGTGCTTCATAC
CCCAAGCTACCTACAGGTAAACAGTTACGGAAACAGATGTCAGATCGAGT
TGAGAAAGGACAATATTTGCTTGGGGACCTAGTCGAGGGAAAAACGTACA
CCAAATTGGTCCAAGTTGATGGTGAAATCGTTAGGGAAAGCTTTATTATT
GAAGCACGACGTATTCCCATGGAAGAGATTCGATCGAGGATTTACAAAGA
ACATTCCGAGCTAGGTATGCTTTTGCTTTCTTATAAATTTATGATCGTGG
ACCTGCACTTGTTTAATCGTTTGATCAGGTTTGATTTTTATTTATACCAT
AAAATATATCAAACATTTTTTTGCTCAGGAAGTCACAATTTGAAAGAATA
TTTGTGTTTAGGCATGAGATTTTGGTTTCTAGACATGTTTTTATAAGAAA
ACGGGCCAAATTGATTTTTTATAAGCACATAACAAATTACTTAGTCATTA
GCTTTCTTTTGAGATTGGTTCATTAAGTTATTTTGTTTTTTTTGCACAAT
AATAGGTAAACATCATAGGAAAGAGGAAAATTAAACGGCTCTTTACCTAA
AGAATCATTACTTATAAGCATAACTCATTTGTTCTTCACTAAATTACTCT
TTTTTATTGGATAGATATTTTTTGCCTATATGAAGTCGTATTTCAACAGA
ATATTGTGTTTGAAACGTCCATTGGTTTTTTTATTTTAGGAATTCTACGC
TCAAAAAATCTTCTTAAACGTTATTTGGTTGTCTGGGGAGATCATTCCTC
GCACTTGGCCCATGGTGTGCTTTTGTATACGGTGAAGGTGATTTACTCCA
AATCGATATTTTATACGGACGAGGAGATGCAACAAAGGTTTGGCGTGGTA
GTCAATGTGCAAAGTGTGGTGGAGCAGCCCCAAATATACATATTTGCTCA
TTGTGGGGATAGTATCGCAGAAAAGCTGTCCTATATAATGTTTAGACGGG
AAGATATTCTGAAACTCAAACTAACGATGTTTTTTGGAAGTATTGAAGTT
CAAGACGTCATG

Coding sequence (CDS) from alignment at sc0000304:64137..68948-

>TCONS_00018667 ID=TCONS_00018667|Name=TCONS_00018667|organism=Clytia hemisphaerica|type=CDS|length=2532bp|location=Sequence derived from alignment at sc0000304:64137..68948- (Clytia hemisphaerica)
GTGGTGCTTCATACCCCAAGCTACCTACAGGTAAACAGTTACGGAAACAG
ATGTCAGATCGAGTTGAGAAAGGACAATATTTGCTTGGGGACCTAGGGAA
ACAAACTGAGATAGAGACTGGTAAAAAGCGACGTAAGCACAAAAAACCAG
CTGATTTTGACTTTGACGGTGATGCTATGGTAAATGAAGTTGAGAGTATG
CCTGACAATGCAAAGGCTAAAGCTTCTCTAGAAAAGAATTACCAAGAAAA
GCAAGCTGACATGATATATGGGACCAGAACATCTTTAAGCAAATACGATA
GCCAACGACTTGCATTGAATTTTGAATCGCCAGCTTCGGCAGTTTTGTGT
AACAACAAAAACTGCAGAAGAAAATGAAAAACTTTTAAATCAAAGTCTTC
TTGTGAATAAAGAGAATAATAATATACAGCTTATCATTCCTCAGCCAGAG
AAGAAATTTAAAGGAGTTGAGAAAGTTGCAGCTCAATCAATTTTAAATGA
GGTTAACGGTCAATTTCAAACCATCTTTAATCAAAGTTTTACCGATGTAT
TGTGTAAGTTAAAGGGTACCGATGTTGAGAAGAAAAAGTCACCAGCTGAA
AAAAAGAAGTACATTCGAAAGATCCAGGGCAAGGTGGTGCTTCATACCCC
AAGCTACCTACAGGTAAACAGTTACGGAAACAGATGTCAGATCGAGTTGA
GAAAGGACAATATTTGCTTGGGGACCTAGGGAAACAAACTGAGATAGAGA
CTGGTAAAAAGCGACGTAAGCACAAAAAACCAGCTGATTTTGACTTTGAC
GGTGATGCTATGGTAAATGAAGTTGAGAGTATGCCTGACAATGCAAAGGC
TAAAGCTTCTCTAGAAAAGAATTACCAAGAAAAGCAAGCTGACATGATAT
ATGGGACCAGAACATCTTTAAGCAAATACGATAGCCAACGACTTGCATTG
AATTTTGAATCGCCAGCTTCGGCAGTTTTGTGTAACAACAAAAACTGCAG
AAGAAAATGAAAAACTTTTAAATCAAAGTCTTCTTGTGAATAAAGAGAAT
AATAATATACAGCTTATCATTCCTCAGCCAGAGAAGAAATTTAAAGGAGT
TGAGAAAGTTGCAGCTCAATCAATTTTAAATGAGGTTAACGGTCAATTTC
AAACCATCTTTAATCAAAGTTTTACCGATGTATTGTGTAAGTTAAAGGGT
ACCGATGTTGAGAAGAAAAAGTCACCAGCTGAAAAAAAGAAGTACATTCG
AAAGATCCAGGGCAAGGTGGTGCTTCATACCCCAAGCTACCTACAGGTAA
ACAGTTACGGAAACAGATGTCAGATCGAGTTGAGAAAGGACAATATTTGC
TTGGGGACCTAGGGAAACAAACTGAGATAGAGACTGGTAAAAAGCGACGT
AAGCACAAAAAACCAGCTGATTTTGACTTTGACGGTGATGCTATGGTAAA
TGAAGTTGAGAGTATGCCTGACAATGCAAAGGCTAAAGCTTCTCTAGAAA
AGAATTACCAAGAAAAGCAAGCTGACATGATATATGGGACCAGAACATCT
TTAAGCAAATACGATAGCCAACGACTTGCATTGAATTTTGAATCGCCAGC
TTCGGCAGTTTTGTGTAACAACAAAAACTGCAGAAGAAAATGAAAAACTT
TTAAATCAAAGTCTTCTTGTGAATAAAGAGAATAATAATATACAGCTTAT
CATTCCTCAGCCAGAGAAGAAATTTAAAGGAGTTGAGAAAGTTGCAGCTC
AATCAATTTTAAATGAGGTTAACGGTCAATTTCAAACCATCTTTAATCAA
AGTTTTACCGATGTATTGTGTAAGTTAAAGGGTACCGATGTTGAGAAGAA
AAAGTCACCAGCTGAAAAAAAGAAGTACATTCGAAAGATCCAGGGCAAGG
TGGTGCTTCATACCCCAAGCTACCTACAGGTAAACAGTTACGGAAACAGA
TGTCAGATCGAGTTGAGAAAGGACAATATTTGCTTGGGGACCTAGGGAAA
CAAACTGAGATAGAGACTGGTAAAAAGCGACGTAAGCACAAAAAACCAGC
TGATTTTGACTTTGACGGTGATGCTATGGTAAATGAAGTTGAGAGTATGC
CTGACAATGCAAAGGCTAAAGCTTCTCTAGAAAAGAATTACCAAGAAAAG
CAAGCTGACATGATATATGGGACCAGAACATCTTTAAGCAAATACGATAG
CCAACGACTTGCATTGAATTTTGAATCGCCAGCTTCGGCAGTTTTGTGTA
ACAACAAAAACTGCAGAAGAAAATGAAAAACTTTTAAATCAAAGTCTTCT
TGTGAATAAAGAGAATAATAATATACAGCTTATCATTCCTCAGCCAGAGA
AGAAATTTAAAGGAGTTGAGAAAGTTGCAGCTCAATCAATTTTAAATGAG
GTTAACGGTCAATTTCAAACCATCTTTAATCAAAGTTTTACCGATGTATT
GTGTAAGTTAAAGGGTACCGATGTTGAGAAGAAAAAGTCACCAGCTGAAA
AAAAGAAGTACATTCGAAAGATCCAGGGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010442XLOC_010442Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018667-exon-sc0000304-1575043694:68676..68948TCONS_00018667-exon-sc0000304-1575043694:68676..68948Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1575043694:67868..68012TCONS_00018667-exon-sc0000304-1575043694:67868..68012Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1575043694:66965..67083TCONS_00018667-exon-sc0000304-1575043694:66965..67083Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1575043694:64935..65162TCONS_00018667-exon-sc0000304-1575043694:64935..65162Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1575043694:64137..64459TCONS_00018667-exon-sc0000304-1575043694:64137..64459Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1510915933:68676..68948TCONS_00018667-exon-sc0000304-1510915933:68676..68948Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1510915933:67868..68012TCONS_00018667-exon-sc0000304-1510915933:67868..68012Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1510915933:66965..67083TCONS_00018667-exon-sc0000304-1510915933:66965..67083Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1510915933:64935..65162TCONS_00018667-exon-sc0000304-1510915933:64935..65162Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1510915933:64137..64459TCONS_00018667-exon-sc0000304-1510915933:64137..64459Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1491911889:68676..68948TCONS_00018667-exon-sc0000304-1491911889:68676..68948Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1491911889:67868..68012TCONS_00018667-exon-sc0000304-1491911889:67868..68012Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1491911889:66965..67083TCONS_00018667-exon-sc0000304-1491911889:66965..67083Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1491911889:64935..65162TCONS_00018667-exon-sc0000304-1491911889:64935..65162Clytia hemisphaericaexon
TCONS_00018667-exon-sc0000304-1491911889:64137..64459TCONS_00018667-exon-sc0000304-1491911889:64137..64459Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018667-proteinTCONS_00018667-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000304supercontigsc0000304:64137..68948 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.161446	0.196794	0.0456993	0	0.598727	0.731189	0.830257	1.02018	0.510178	0.219989	0.548203	0.684262	0.365065	0.585414	0.733395	0.491903	0.333291	0.797024	0.471957	1.5714	0.546333	0.742343	0.153287	0.126219	0.563346	0.386749	0.221374	0.453632	0.523895	0.136927
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018667 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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