TCONS_00018665 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018665
Unique Name	TCONS_00018665
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1609

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000304:266342..273187+

transcript sequence

>TCONS_00018665 ID=TCONS_00018665|Name=TCONS_00018665|organism=Clytia hemisphaerica|type=transcript|length=1609bp
GAGGAAAGTCATCTCATGGTTGATCTGTCTTGTTTTAGTGTTTCttacta
aataaaaaaatcagccaCAATGAGCAAAAAAGGAACCAAATTGCCCATCG
ACCGCCCAGGAATCAAGGCTGAAAACCCTGAGAAATATTATGAATTCGGT
GACGAGATTGGAAGAGGAAAATTTGCTGTCGTTCAACAAGTCAAATCGAA
AACTGACGGAACCATGTTCGCTGCTAAAATCATCAAGTTCGACTCCGATT
CTTTGAAATTCGCCATTCGTGAATATGATTTGATGGTTAGTGAGCATTTC
CCAAAAGTAGGAACCGTCAAATTACATGAAGCCTACCTCGTCAGAAAATA
CCTCATCCTTATCATGGACCTTGTTGATGGTAAAACGTTATTGGACAAAG
TATCACACATGCATTCCATCACCGAGGATGACGTCGCAACCTTCATTCGA
CAACTTTGTGAAATCTTAAAAGATTGGCATTCCAAAAATGTCGTCCATCT
TGATTTACGGCCCACCAACATTCGATTTGCAAACGCCCGTGACTTGAAGA
TTGTTGATTACAACAGTTGCCGACACATTCCCAACAAGAAAGCTGGAGCT
GTCGTGGACGTCATCGGCGATACTGAATTCTGTGCCCCTGAAATGCTGCA
ATTCGAACCAGTCCTTCCAGGATCTGACATGTGGACTATAGGAGTACTCG
CTTACTGCATGTTATCTGGAATTTCACCTTTCTTCTACGAAGACGAAGAT
AAAGTCGTCAAATGTGTACAAAAAGTCAAGTGGCAATTCGACGAAAGCGC
ATTCGCTGAGATCACAGCAGAAGCTaaagatttcattaaaaaactctTCG
TGAGGGCGCCAGAATCAAGAATGACTGCATCTGCAGCTTTAGAACACAAA
TGGCTTTCGAGTGATTACGCAGCTATGCGCAAGAAAACCACCATCGGCGC
TCAAGATGTCATGGTAGAAACTGACGAACGATTATACTCTGAGGAAGAAG
AGGAGTACATTTGGCCATCATGCGTCTTCAGAACATTCGAAGAGGATGAA
TACGATTCTCCTGAAAgcgaagaagatgaagaagaagaagaataaactaa
aaaaaatgtttagagaGAGAAAATTCATTACAAAAttacAATTATTAGGT
GTGGTTGACTTTaccaaaaagacaaaagaaactTCATGACAGGAGCAAGT
CATGGTCAAATTCACCCAGAACGATATTTATGAAAAGAACAGACACTATT
TTATCATTTAGACCAAAATTTGCCCATGAAGTTTAATTTGATCactcttt
tgaaattttataattatttagatatttttcgttttcttttaatATTTGCG
CAAATACCTTTTTCTCTTTATGTTAGGAATTTAAGTCAATTTCATAAATA
ATTCAATCCAGATAGACAATCAATCAATCTTACCAATACTACCTctaaat
tttacagaccggaatataattatgattattttttattacatACTTTGTAC
ATTTATTTTTCCAActaataattttctttatatttttcgaattatttttt
ttttgtaaacaaaaaacgttttttctGATGGATCCAAAAGAAAACTCCtc
caaaaaatt

Run BLAST on NCBI

transcript from alignment at sc0000304:266342..273187+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018665 ID=TCONS_00018665|Name=TCONS_00018665|organism=Clytia hemisphaerica|type=transcript|length=6846bp|location=Sequence derived from alignment at sc0000304:266342..273187+ (Clytia hemisphaerica)
GAGGAAAGTCATCTCATGGTTGATCTGTCTTGTTTTAGTGTTTCttacta
aataaaaaaatcagccaCAATGAGCAAAAAAGGAACCAAATTGCCCATCG
ACCGCCCAGGAATCAAGGCTGAAAACCCTGAGAAATATTATGAATTCGGT
GACGAGATTGGAAGAGGAAAATTTGCTGTCGTTCAACAAGTCAAATCGAA
AACTGACGGAACCATGTTCGCTGCTAAAATCATCAAGTTCGACTCCGATT
CTTTGAAATTCGCCATTCGTGAATATGATTTGATGGTTAGTGAGCATTTC
CCAAAAGTAGGAACCGTCAAATTACATGAAGCCTACCTCGTCAGAAAATA
CCTCATCCTTATCATGGACCTGTAAGTAATCCACACCTTTACTAGTCTAC
CATGCTAGACTCTACCATGTAGGCACAGTAGAAAATAAGTAAGAATTATT
ATGGAAGGGACAAATTGTAGCATTcatacaaactgatattatcacTTCAC
AATAATCGTACTATCATACTACTGCATTACACGAaatataaacgactcca
gtctcaTCATGATGAAATAGCCAGTCTGTAAACTCTATCATGGATAATTA
TTTCGTAATTTTGGTCTTGTATTCTCCCAGATGGCACACAACgccaaaac
aacgtccatgtgacattcataacgtccaaataacgttatttgaacgttaa
aagcacgctgtgtgccagctgggagctTGCATTGGGACTCAtgtgttttt
taaagatttcaacATCAGATTGTTCTCAATTGTTCCCGAATTTTCAATCA
CTTATATTCATTTGATCTTAGTGTTGATGGTAAAACGTTATTGGACAAAG
TATCACACATGCATTCCATCACCGAGGATGACGTCGCAACCTTCATTCGA
CAACTTTGTGAAATCTTAAAAGATTGGCATTCCAAAAATGTCGTCCATCT
TGATTTACGGGTAAGGACAAAAATTAGTCCGagtcacaaaaaaaaattga
cacgaGTAGTATGGTGCCAATGAGGTTTGTTAATGAAAATCGGCCTGTTA
AAAGCCATAGAATTGTCAATCACCCGAAtttatacaagtttttttgcatG
GGATTCTTCCTGTGTCACCCGTCTGCAAAGGAGCTTAGTAAGAACCGTTA
GTTTCGGGTTTCCATTTAGCAAAATATCTGTTTGTTCCCGGTGCATGCAA
CTTGTTTAATGAAGACACATCCCTCTCATTGGAGTAACAGATTGGATCTA
AAAGTGTTAAAACTTGTGTTATGAATAAGGAAATCAAAGGCCCAAAAAAT
ACGAACAAGGGCTTACATAGCAAGTAATTTCAAGAACAATTTTTCCATTT
CCAGCCCACCAACATTCGATTTGCAAACGCCCGTGACTTGAAGATTGTTG
ATTACAACAGTTGCCGACACATTCCCAACAAGAAAGCTGGAGCTGTCGTG
GACGTCATCGGCGATACTGAATTCTGTGGTAGGTTTGATATTGATAATTA
GAACAGTTGATAAAGCCGTAAAAGTATTACTTAAAAAATTGACAATAAAA
GCCTGTATGATATTAATATTATCTGCAGAGGAGAAAAAAAGGCTAAAACT
TGTAGAATTTGAACCAaattgtgcttgttgaaaagatattcaagagTGCA
GGAATATTACCAAATagcaaaagttaaaaacattttgggaaattaaaatg
aaaaagtaagaagaaaaaaatcatcttttgcattttcttctatttcataa
tattccactccttagtatcttttcaacaagcaaaaAATCCAATTTCTATA
AAAAGTTACTGCCTATTTCTCTCCACTGAAGATTATTTGCATTGAAGCAA
TGTAAAGGATTATCAATATAAGATTGACAATGCTCGTAAAGCCAATCATC
CGAAACTTTGATACACAAATCGAGCCAAGGCAATTTAATAACACTGCTGT
TCCATATTTTCTAGCCCCTGAAATGCTGCAATTCGAACCAGTCCTTCCAG
GATCTGACATGTGGACTATAGGAGTACTCGCTTACTGCATGTAAGTACAA
ATCATTTTATATGAAAAACTGAAACCCTTCATCacacaagtaaaaaaaaa
acacgttaAATATacgccttttcgaccgtagtcgcggggacatttttttt
gtctgctttatcccactaataccgtcccaatcctttttgacgcatttttc
tattgtctattggtgcgaaaaaaaggacggttttagtgggataaagcgga
caaaaaatgcccgcgcggtaattggtggctacggtcgaaaaggtgtattg
tccTCCAAAGGATCGACTACTTTCTCTTTCAACCATTACGAAGCAAAGAA
AAAGAGagactgatttgaaaatattttaccaaaaaaactGGCGACTAAAC
GAGCATGATATATTTTGACAATCAGCTCTTTAATAAGGAGTTTTGGATTA
AGAAGAAGGTGCCCAGAAACAGGCCTTAACAAGTACTCAAGAATAGTGCA
CAAAATGTCCgccttttaaaggttttgttggAACTGGGTTGGAAACTTTG
TTCACTATTCTAGAGTACCTGTTGATTGGAAAGATCACTGTGCGAAAAAG
GAGGGACAGCAAAATACAACTCATTCACACTTCAGACAATATAAacttat
tttgattttcctttatGAAAGAATAGTATAGACCAAGTTGCATAACATta
tgaaattcgaacgtttgattCCATGAAGGCAGATCTATAGtattataaag
cccgaagggctagatgtcgtgctttaagccatcgcgggcaaaaaaaagtg
aatatcggaaaaaatattgttgctattgtttttgaaatccCGCGAAGCTT
CAATCAGAAAGGTCAAGCGCTGAAAGTCTATTGTAATGTGactaggattt
cctacctaaaaCCATGACACACCTTTCAGCAAAAGTACatcatctagccc
ttcgggctttataaatctatggacaGATCTAAAAAAACTTCTATTGATTG
AATTATAGGTTATCTGGAATTTCACCTTTCTTCTACGAAGACGAAGATAA
AGTCGTCAAATGTGTACAAAAAGTCAAGTGGCAATTCGACGAAAGCGCAT
TCGCTGAGATCACAGCAGAAGCTaaagatttcattaaaaaactctTCGTG
AGGGCGCCAGAGTAAGTAGACATCTAATCCTTAACACCAACAAGTCAGAC
TAAGCTTAATGATATCCTACTCacgattatctttccaacgagcacaaaat
cacAATCTAAAACAAACTCTGTCAAAAGTTATTTTACTGACAGTTAATTT
GAAAAGTACTAAAATTTCTGAATCTGGTTTATTTCCATTATCCAGAGCAC
TTTTTCTTATCTCGCCCCAGTCTGTGAACAAAATAATTTCCACTTGTGCC
TTTTCAAATAAGTGACAATAAACTGTAATGTTTCGCTCAGTTTTTCCAAA
GGAAACGAGTGTTAACATACAGAGAGTATTAACCTTTCAAATCACCTTCT
CCTCCTTTAGATCAAGAATGACTGCATCTGCAGCTTTAGAACACAAATGG
CTTTCGGTAAGAGTGATGaccttctttattttcttttttttgtttcctcA
CAAAGTGGAttcaaatgaaaaacatttttaccaAGCAGATCAAAGCCAAA
AGAAACAAATGTGCGAACTTTCAGTAAAACTAAACCATGTCTTCCTATTT
Acagtgaaataaatagaatcacaaagtgctcaagaaaattcgaacaaatt
cgagcgaaatatcgagaaaaaagaaataactTACGATTGCTACGCGGTGT
TTCATGctttcaattcatgatattcatgacataaTATTTTCTACGGAAGG
ACCCGGGTTTTTGCCAGTGgtagcaaattttatagaacCTTTTTCTAGTT
CAAATTtaccactactggctaaaaccggggtatttccgtagaaaacatta
cgtcatgaatatcatgaattattgaaataaaaactACAATACACTGCATA
ACCTGAAGATTGCACCAGCATCAAACACCGTGTAGCGATTGTAAACTAGT
TCTTTATTTCTCTTCCTatttataattttcattaaCAGAGTGATTACGCA
GCTATGCGCAAGAAAACCACCATCGGCGCTCAAGATGTCATGGTAGAAAC
TGACGAACGATTATACTCTGAGGTAAGTGACCTTTCAGTATTAAGGAGAT
AACAAATAAAGGAGATAAATTCAAAAGGACGCAATCTAATTTAGCACGAT
GACACTTCTTTTAGGTTTTTCATTGCATGACAAATTAGTCATTATCGGGG
TGGAAATGTAGTACAAACTGGGGAAGCAGCTTTCCAAATAGTCATTTTAG
GGCCACATTGTCCTATATATCCTTGAATAACTTATCTTATATATCCTTAA
AAGGCCTTGAATAGATCCTTAAATATCTTGGACTAATTACACAAGCGGAG
AACCTCCCACCTACATACCTACCTTATTGTATTGATCATTTTTAACCAAT
GAGATGTCTCTATTGTAACCATTACATCATTTCTGGCCAATAGGAAGAAG
AGGAGTACATTTGGCCATCATGCGTCTTCAGAACATTCGAAGAGGATGAA
TACGATTCTCCTGAAAgcgaagaagatgaagaagaagaagaataaactaa
aaaaaatgtttagagaGAGAAAATTCATTACAAAAGTATGTTACAATCGA
GTCTCTATAACTTGAACCGCTTATCTCaaacctctttaactcgaaccttt
tATAAGTCGCACATCAATAGCTCGAACCTCTTTAACTCATACCTCAACTA
TCACTCGAGTCTCTGTACCTCGACCTCTGTCATTCGAACCTCAATAACCT
CGATCTCTGtagctcgaacctctataactcgaacctttatAACTCACACA
tcaataactcgaacctctgtaGCTTGAGCCTCTGTAGTGCGAACCTCTGT
AGATTGGATAtatcgaacaagttttctgacCGCTTCAAGTAACCAACCCT
ACAACACTCTAATTTTCCAtatttggaaaatgttttttccctTGTTCCTG
TTCCGGCCACAGGTTCCTGTTTCTACACACAGCTTTGCCCCCTAAAAAAT
AAAGGCCATTGTGTTCTAAAAACCTGCTTCGTGTTAAGAGACTTGATCAT
TCTATTAAGATCTCAAATGCGAGTAGTGATAANGCTTCGTGTTAAGAGAC
TTGATCGTTCTATTAAGATCTCAAATGCGAGTAGTGATAAAAGTTTTGCC
CATTCAGAACCATTTAGATCACTTTTGCTGGAggttgaaatcgaaagtga
aaatcaAAAGCTCAAATATGATATAAACGAAAGGTTTTCATTATACGATT
CCAAAGAAATATCACAAAAAGAGTCTGAcaatctaaagtctattcacgac
aagtgtgcactcttttttcttctacctataacttttgaaggaattcttca
atctttataaatttggtatcattggaaagatattagtgagtggtataatt
tgaaataaaaaaatctttaaaaaaattctaataaggaagatgaaaatgaa
gaagaaaaaaatgaagatcttgtagaaaagtgctataactatcattttca
ctgaagtgaatccttaatcatcgaacgtcatcactNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNTGTAGATTGGATAtatcgaacaagttttc
tgacCGTTTCAAGTAACCAACCCTACAACACTCTAATTTTCCAtatttgg
aaaatgttttttccctTGTTCCTGTTCCGGCCACAGGTTCCTGTTTCTAC
ACACAGCTTTGCCCCCTAAAAAATAAAGGCCATTGTGTTCTAAAAACCTT
CTTCGTGTTAAGAGACTTGATCATTCTATTAAGATCTCAAATGCGAGTAG
TGATAAAAGTTTTGCCCATTCAGAACCATTTAGATCACTTTTGCTGGAgg
ttgaaatcgaaagtggaaatcaaAAGCTCAAATATGATATAAACGAAAGG
TTTTCATTATACGATTCCAAAGAAATATCACAAAAAGAGTCTGACAATCT
ATATTCGAAGATGATAGATCAAGCTCAAACCCAGTCCTTTAGTTTGCTTT
TTAATGATACTTATATAGTCCTTACCAACGTCCATCAGAAAAGTGGACTA
GGTACGAGATTGATGATAGGTCAAAAAATAACGAAGAACATTAAAAACAC
ACAAATCTTCGTTTGCAAATTCGACTTTGATGACAATGatgtaaaaaaat
gttatttctttttctttttcagttacAATTATTAGGTGTGGTTGACTTTa
ccaaaaagacaaaagaaactTCATGACAGGAGCAAGTCATGGTCAAATTC
ACCCAGAACGATATTTATGAAAAGAACAGACACTATTTTATCATTTAGAC
CAAAATTTGCCCATGAAGTTTAATTTGATCactcttttgaaattttataa
ttatttagatatttttcgttttcttttaatATTTGCGCAAATACCTTTTT
CTCTTTATGTTAGGAATTTAAGTCAATTTCATAAATAATTCAATCCAGAT
AGACAATCAATCAATCTTACCAATACTACCTctaaattttacagaccgga
atataattatgattattttttattacatACTTTGTACATTTATTTTTCCA
Actaataattttctttatatttttcgaattattttttttttgtaaacaaa
aaacgttttttctGATGGATCCAAAAGAAAACTCCtccaaaaaatt

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010440	XLOC_010440	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000304	supercontig	sc0000304:266342..273187 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.184072	0.201076	0.143463	0.168428	0.17087	0.0840668	0.338077	0.126601	0.443183	0.494058	0.532828	0.210196	0.314796	0.420077	0.104522	0.833251	2582.57	3138.51	0.27954	0.468017	1396.05	1436.65	486.364	617.152	818.888	816.582	3.13696	2.38583	0.0572742	0.0573135

Blast

[Close]

BLAST of TCONS_00018665 vs. Swiss-Prot (Human)
Match: DAPK3 (Death-associated protein kinase 3 OS=Homo sapiens GN=DAPK3 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.349e-47
Identity = 101/314 (32.17%), Postives = 171/314 (54.46%), Query Frame = 1

Query:  115 KAENPEKYYEFGDEIGRGKFAVVQQVKSKTDGTMFAAKIIKFDS-DSLKFAI------REYDLMVSEHFPKVGTVKLHEAYLVRKYLILIMDLVDGKTLLDKVSHMHSITEDDVATFIRQLCEILKDWHSKNVVHLDLRPTNI-----RFANARDLKIVDYNSCRHIPNKKAGAVVDVIGDTEFCAPEMLQFEPVLPGSDMWTIGVLAYCMLSGISPFFYEDEDXXXXXXXXXXWQFDESAFAEITAEAKDFIKKLFVRAPESRMTASAALEHKWLSSDYAAMRKKTTIGAQDVMVETDERLYSXXXXXYIWPS 1020
            + E+ E +YE G+E+G G+FA+V++ + K  G  +AAK IK     S +  +      RE +++     P +  + LH+ +  +  ++LI++LV G  L D ++   S+TED+   F++Q+ + +   HSK + H DL+P NI        N R +K++D+     I  +      ++ G  EF APE++ +EP+   +DMW+IGV+ Y +LSG SPF  E + + +  +  V + FDE  F+  +  AKDFI++L V+ P+ RMT + +LEH W+     A+R++   G          RL +   +EY   S
Sbjct:    5 RQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNI--ITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPR-IKLIDFGIAHKI--EAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIK----AIRRRNVRGEDSGRKPERRRLKTTRLKEYTIKS 309

The following BLAST results are available for this feature:

BLAST of TCONS_00018665 vs. Swiss-Prot (Human)

BLAST of TCONS_00018665 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
DAPK3	1.349e-47	32.17	Death-associated protein kinase 3 OS=Homo sapiens ...	[more]

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TCONS_00018665 (transcript) - C. hemisphaerica