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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018663 ID=TCONS_00018663|Name=TCONS_00018663|organism=Clytia hemisphaerica|type=transcript|length=4526bpRun BLAST on NCBI protein sequence of TCONS_00018663-protein >TCONS_00018663-protein ID=TCONS_00018663-protein|Name=TCONS_00018663-protein|organism=Clytia hemisphaerica|type=polypeptide|length=598bp MPQVKVNFGAKLNSTKKTFPPEKKAPVSTGAKGKVNPFLKNDAAKKAPTSRun BLAST on NCBI transcript from alignment at sc0000304:246525..263984+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018663 ID=TCONS_00018663|Name=TCONS_00018663|organism=Clytia hemisphaerica|type=transcript|length=17460bp|location=Sequence derived from alignment at sc0000304:246525..263984+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000304:246525..263984+ >TCONS_00018663 ID=TCONS_00018663|Name=TCONS_00018663|organism=Clytia hemisphaerica|type=CDS|length=21564bp|location=Sequence derived from alignment at sc0000304:246525..263984+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018663 vs. Swiss-Prot (Human)
Match: DAPK3 (Death-associated protein kinase 3 OS=Homo sapiens GN=DAPK3 PE=1 SV=1) HSP 1 Score: 183.341 bits (464), Expect = 9.447e-49 Identity = 99/276 (35.87%), Postives = 160/276 (57.97%), Query Frame = 1
Query: 2695 LKTENPSLHYEFEEEIGSGKFAIVKKCKHKKTGQIYAAKII--RYDSDTLKFAIREYEMMMKENHSL--VGRKGTVKLHEAYLVRKYLILVMELVDGKTLLDKFVGMHSLTEDDVAQVIKQLLEFLADWHVNNLVHLDLRPTNI----RFITGREVRILDYNSCRHIPNKKAGAVVDVIGDTEFCAPEMLNFEPCMPGSDTWTIGVLTYVLLSGISPFFDEDEDKVILSVQKVKWEFDGIAFGSITSEAKDFIRKLFVRAPESRLTAEKALEHPWL 3498
+ E+ HYE EE+GSG+FAIV+KC+ K TG+ YAAK I R S + + RE + +E + L + + LH+ + + ++L++ELV G L D SLTED+ Q +KQ+L+ + H + H DL+P NI + + ++++D+ I + ++ G EF APE++N+EP +D W+IGV+TY+LLSG SPF E + + + ++ V ++FD F + + AKDFIR+L V+ P+ R+T ++LEH W+
Sbjct: 4 FRQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREE--IEREVNILREIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI--EAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWI 275 HSP 2 Score: 176.792 bits (447), Expect = 1.366e-46 Identity = 99/299 (33.11%), Postives = 174/299 (58.19%), Query Frame = 3
Query: 909 KPENPEKYYDFGDEIGRGKFAVVKYATSKSTGQKYAAKIIKFDS-DSLKFAI------REYDMMAGKLEGKGLVKLHEAYLVRKYLILIMELVDGKTLLDKVASMHAITEDDVATFIRQLLETLQDMHSKNLVHLDLRPTNIRF----VSGRDLVILDYNSCRHLANKKAGAVVDVIGDTEFCAPEMLNFDPVSPWSDVWSIGVLAYILLTGISPFFYEDEDKVVLCVQKVKYEFCPE-FDDVSANAKDFIKKIFKRAPESRLSAADALSHEWLSKDYEAQRKRNVLRIQDVLRETDER 1769
+ E+ E +Y+ G+E+G G+FA+V+ K TG++YAAK IK S + + RE +++ ++ ++ LH+ + + ++LI+ELV G L D +A ++TED+ F++Q+L+ + +HSK + H DL+P NI V + ++D+ + + ++ G EF APE++N++P+ +D+WSIGV+ YILL+G SPF E + + + + V Y+F E F + S AKDFI+++ + P+ R++ A +L H W+ +A R+RNV R +D R+ + R
Sbjct: 5 RQEDVEDHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILR-EIRHPNIITLHDIFENKTDVVLILELVSGGELFDFLAEKESLTEDEATQFLKQILDGVHYLHSKRIAHFDLKPENIMLLDKNVPNPRIKLIDFGIAHKI--EAGNEFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETKQETLTNISAVNYDFDEEYFSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWI----KAIRRRNV-RGEDSGRKPERR 295 The following BLAST results are available for this feature:
BLAST of TCONS_00018663 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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