TCONS_00018655 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018655
Unique NameTCONS_00018655
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018655 ID=TCONS_00018655|Name=TCONS_00018655|organism=Clytia hemisphaerica|type=transcript|length=468bp
CTCCAGTACTCTTATCGATAACATTCTTACTTCTCCTTTTAACTGTTCAT
CAACTTCTGGAAATCTAACTGTTGCTATATCTGACCATCTTCCTCAGTTT
CTAATTCTTAATACTGACTGTGATTTTGACTACAAATCTGAACTTCCTTT
TCGTCGagattggtccaaatttgatgAGGCTACTTTCAAAGATGAATTCG
ACAGCTTTGATTGGAAAGATCTTCTTAAAACTGAAAGGGGGATGTTGACT
TatcttttgattcttttttgacTCGTTTTTCTTCTTTGTATGATAAGCAT
GTTCCTCTGAAACAGTTGACCAGACGTCAAGCTAACCTCCTTCTCAAACC
CTGGATCACCAAAGGCATTTTTGTCTCGATGAACATCAGAGATAACCTCA
AACAGTGAGGtaatttaagaactttgtatgttgaggtaaattttgttttt
tcttaaattttgagcttg
Run BLAST on NCBI

transcript from alignment at sc0000303:315445..315912

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018655 ID=TCONS_00018655|Name=TCONS_00018655|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at sc0000303:315445..315912 (Clytia hemisphaerica)
caagctcaaaatttaagaaaaaacaaaatttacctcaacatacaaagttc
ttaaattaCCTCACTGTTTGAGGTTATCTCTGATGTTCATCGAGACAAAA
ATGCCTTTGGTGATCCAGGGTTTGAGAAGGAGGTTAGCTTGACGTCTGGT
CAACTGTTTCAGAGGAACATGCTTATCATACAAAGAAGAAAAACGAgtca
aaaaagaatcaaaagatAAGTCAACATCCCCCTTTCAGTTTTAAGAAGAT
CTTTCCAATCAAAGCTGTCGAATTCATCTTTGAAAGTAGCCTcatcaaat
ttggaccaatctCGACGAAAAGGAAGTTCAGATTTGTAGTCAAAATCACA
GTCAGTATTAAGAATTAGAAACTGAGGAAGATGGTCAGATATAGCAACAG
TTAGATTTCCAGAAGTTGATGAACAGTTAAAAGGAGAAGTAAGAATGTTA
TCGATAAGAGTACTGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010434XLOC_010434Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018655-exon-sc0000303-1491911889:315445..315912TCONS_00018655-exon-sc0000303-1491911889:315445..315912Clytia hemisphaericaexon
TCONS_00018655-exon-sc0000303-1510915933:315445..315912TCONS_00018655-exon-sc0000303-1510915933:315445..315912Clytia hemisphaericaexon
TCONS_00018655-exon-sc0000303-1575043694:315445..315912TCONS_00018655-exon-sc0000303-1575043694:315445..315912Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:315445..315912 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.958858	0.801461	1.70605	1.44053	0.36945	0.291944	0.352218	0.659485	0	0.142979	0.142883	0.364911	0.459567	0.0953782	0.0782589	0.0834716	0.10344	0.423144	0.151434	0.914238	0	0.581395	0.323415	0.871617	0.441207	0.540149	0.188657	0.400907	0.153947	0.620633
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018655 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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