TCONS_00018650 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018650
Unique NameTCONS_00018650
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length352

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018650 ID=TCONS_00018650|Name=TCONS_00018650|organism=Clytia hemisphaerica|type=transcript|length=352bp
CAAGGCTTTggcaatttttcagccaaaacataATTTCATCGGTGGACTTT
ACAGTCTGTGTTAGGGTAATTCATACAGATTGTTTACAAAAAACCCCTAG
TTTTAcagtagattttcattttatatattttcaggctAGTTATCGTCATT
TTCTCTATGAAATACTGTTTATAACAGCACTTCCCAGAAAAACCAGCCCA
CAGAAAGTTAAGTATTGGCCATCCAAGCACTGGTACAATGAAGCAAAGAT
TGACTCAGGATGGCtcaacatttttgcattttgaccGTCACGTTAAGGCA
TGGCAAAGTctgctaaaaaatgaaattaaacctGCAGAAACTATATTACG
TG
Run BLAST on NCBI

transcript from alignment at sc0000303:238656..239007

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018650 ID=TCONS_00018650|Name=TCONS_00018650|organism=Clytia hemisphaerica|type=transcript|length=352bp|location=Sequence derived from alignment at sc0000303:238656..239007 (Clytia hemisphaerica)
CACGTAATATAGTTTCTGCaggtttaatttcattttttagcagACTTTGC
CATGCCTTAACGTGACggtcaaaatgcaaaaatgttgaGCCATCCTGAGT
CAATCTTTGCTTCATTGTACCAGTGCTTGGATGGCCAATACTTAACTTTC
TGTGGGCTGGTTTTTCTGGGAAGTGCTGTTATAAACAGTATTTCATAGAG
AAAATGACGATAACTagcctgaaaatatataaaatgaaaatctactgTAA
AACTAGGGGTTTTTTGTAAACAATCTGTATGAATTACCCTAACACAGACT
GTAAAGTCCACCGATGAAATtatgttttggctgaaaaattgccAAAGCCT
TG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010429XLOC_010429Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018650-exon-sc0000303-1491911889:238656..239007TCONS_00018650-exon-sc0000303-1491911889:238656..239007Clytia hemisphaericaexon
TCONS_00018650-exon-sc0000303-1510915933:238656..239007TCONS_00018650-exon-sc0000303-1510915933:238656..239007Clytia hemisphaericaexon
TCONS_00018650-exon-sc0000303-1575043694:238656..239007TCONS_00018650-exon-sc0000303-1575043694:238656..239007Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:238656..239007 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.474094	0.862595	0.753986	0.775796	4.684	2.37944	4.14656	2.3889	0.954442	0.561933	2.72165	0.432655	1.91502	1.15501	0.755935	0.316394	0.931223	0.257874	1.97672	2.09805	0.479746	0.49889	0	0.295754	1.59822	0.713185	0.771645	0.522353	1.51568	0.360364
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018650 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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