TCONS_00018649 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018649
Unique NameTCONS_00018649
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length600

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018649 ID=TCONS_00018649|Name=TCONS_00018649|organism=Clytia hemisphaerica|type=transcript|length=600bp
atttcagaacacatcatttgtatagaAAAATTCATAAACGAAGTTTCCAG
CGAttgaaaaaagctggaaaagcaggTTCTCGACAATTTCGCACGTAAAA
TTAATTATGCATGCGCATCATTAAGTGATAATTATGATTCGTATGTCTtt
aaatacaattcaaaattcTAAATCATCCTCGCTATTGCATCCACTCAAAA
TCTAATAATTTTAACATACTTTAGCAAACTTCTccaaaatttccagattt
tctcGTACTGTATTTAATCACAAGCCCCTGTATACTCCGGTCAACctttc
tttacttttatgaCATTGGAACAATTGGACGAGTGCTTCTTCCTGGACTT
CAAACAGATGATCAATCAATGGCTCAGACGATCAACCACCAAGGAATACA
ACAGAATATCCTAAAACACGATCGATTACCAAAACAAACGCAAGTCATTG
GAGATCGAGGATCTTATCAACATTCACCACCGACAACTTATCAAACATGA
AATCGTGGATGTGTTTTATCAAGTTGATGAATTTGGTATTCCTTAAACGA
AAATTACAAAtagattgataacattttgaAGCTATGAAGCTCATACCTCG
Run BLAST on NCBI

transcript from alignment at sc0000303:233301..233900

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018649 ID=TCONS_00018649|Name=TCONS_00018649|organism=Clytia hemisphaerica|type=transcript|length=600bp|location=Sequence derived from alignment at sc0000303:233301..233900 (Clytia hemisphaerica)
CGAGGTATGAGCTTCATAGCTtcaaaatgttatcaatctaTTTGTAATTT
TCGTTTAAGGAATACCAAATTCATCAACTTGATAAAACACATCCACGATT
TCATGTTTGATAAGTTGTCGGTGGTGAATGTTGATAAGATCCTCGATCTC
CAATGACTTGCGTTTGTTTTGGTAATCGATCGTGTTTTAGGATATTCTGT
TGTATTCCTTGGTGGTTGATCGTCTGAGCCATTGATTGATCATCTGTTTG
AAGTCCAGGAAGAAGCACTCGTCCAATTGTTCCAATGtcataaaagtaaa
gaaagGTTGACCGGAGTATACAGGGGCTTGTGATTAAATACAGTACgaga
aaatctggaaattttggAGAAGTTTGCTAAAGTATGTTAAAATTATTAGA
TTTTGAGTGGATGCAATAGCGAGGATGATTTAgaattttgaattgtattt
aaAGACATACGAATCATAATTATCACTTAATGATGCGCATGCATAATTAA
TTTTACGTGCGAAATTGTCGAGAAcctgcttttccagcttttttcaaTCG
CTGGAAACTTCGTTTATGAATTTTtctatacaaatgatgtgttctgaaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010428XLOC_010428Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018649-exon-sc0000303-1491911889:233301..233900TCONS_00018649-exon-sc0000303-1491911889:233301..233900Clytia hemisphaericaexon
TCONS_00018649-exon-sc0000303-1510915933:233301..233900TCONS_00018649-exon-sc0000303-1510915933:233301..233900Clytia hemisphaericaexon
TCONS_00018649-exon-sc0000303-1575043694:233301..233900TCONS_00018649-exon-sc0000303-1575043694:233301..233900Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:233301..233900 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.734985	0.58453	0.803572	0.296136	1.49454	1.07522	1.24609	1.25176	0.90713	0.323882	0.606979	0.806398	1.12621	1.09548	1.34332	0.665173	0.332493	0.167968	0	0.247886	0.215291	0.469748	1.27222	1.46699	0.434051	0.387622	0.820135	0.926104	0.637139	0.847958
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018649 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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