|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018647 ID=TCONS_00018647|Name=TCONS_00018647|organism=Clytia hemisphaerica|type=transcript|length=1396bp
AGAAGGCATTGTCCAGCCCGAATGCTGAACTTTGGAAGGACGCTATCCAA
AATGAGTACGATTCATTGATCGAAAACGAAACTTGGAAATTGGTTGAAAT
GCCACCGGACAAAAACCTAGTAGGAAGTAAGTGGGTTTTCAAACATAAGA
TAGGAGCTGATGGAAAAATTCAAAGATGCAAAGCTCGTCTTGTAGCACAA
GGATATTCGCAAAAATCCGGAATAGATTACAACGACGTATTCGTTCCTGT
CGCAAAATACAATTCAATTCGCTCCGTACTTGCAATTACAAACGAACTTG
ACTTAGAACTGCATCAAATGGACGTCAAGACAGTGTTCTTAAATGAAGAT
CTTGAGGAAGACATCTTCATGAAACAACCTGAAGGATTCATTAAAAGGGA
CAATCCGAATATGGCATGCAAGTTGCAAAAAAGCATTTACGGTCTAAAAC
AATCTGCCCGATGCTGGGACGAAAAGATGGACGAATTCCTAAAAAAAATC
AGGATTCACTAGAAACGACGCTGACCCTTGTATCTACCACAAACAAATCA
CGGAAGGAGACAAATCCTTTACCCTTATCGTTGCTGTATACGTCGATGAT
CTACTTATCGCCTGCAACAACATCCAGATTCTTCGAGAACAGAAACAGAA
ACTCGGGGAACGTTTCGAAATGGAGGACAAAGGTGAGGTACATTTCATCC
TTGGCATGCAAGTCAAGAGAGATCGTAAAAATCGCAGATTGACTATTGAT
CAAAATGCATTTCTTTCATCTGTGCTAAATCGTTTTAATATGAATAAATG
CAAACCAGTCGCCACACCTCTGCAACCAAGTATGAAGTTCGAAAAGTTGG
CCAACGATGAGGAGATTATAAAGTTAAAGGATTACCAATCAGCGATCGGA
TGTTTGACCTATGCATCAATCGGTACCCGCCCAGACATATCTGCAGCAGT
GGGAGTTTTGAGCCAACATATGTCAAAACCTGGCAAACAACATTGGATTG
GCGTATAGAGAGTTCTGTGTTATTTGAAAGGAACACTTGATTATGGCTTA
ATCTACGAAGGATCTGAGTCAGGAGATATTCTGCTTCACGGTTTTGCAGA
TGCTGATTGGGCTGGAGAAATTGATACACGAAAATCTACCTCTGGTTACG
TATTCAAAGTCGGAAATTCTACAGTATCGTGGAAATCCAAGCGTCAATCG
ATCGTTGAATATGTAGCCTTATTTCAAGCAACACAGGAGGCTATTTGGCT
ACGAACTTTATTCAAAGGTATGGATTTCGAGCAAACTGATCCAACAAAAA
TGTTCCAAGACAATCGAGGAGCTATTGAGTTGGCAAAGAACCCAACTCAC
CACTCTCGAATCAAACACATTGACATTAAGTTTCATCACGTGCGCG Run BLAST on NCBI protein sequence of TCONS_00018647-protein >TCONS_00018647-protein ID=TCONS_00018647-protein|Name=TCONS_00018647-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
KALSSPNAELWKDAIQNEYDSLIENETWKLVEMPPDKNLVGSKWVFKHKI
GADGKIQRCKARLVAQGYSQKSGIDYNDVFVPVAKYNSIRSVLAITNELD
LELHQMDVKTVFLNEDLEEDIFMKQPEGFIKRDNPNMACKLQKSIYGLKQ
SARCWDEKMDEFLKKIRIH Run BLAST on NCBI transcript from alignment at sc0000303:229286..230681 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018647 ID=TCONS_00018647|Name=TCONS_00018647|organism=Clytia hemisphaerica|type=transcript|length=1396bp|location=Sequence derived from alignment at sc0000303:229286..230681 (Clytia hemisphaerica)
CGCGCACGTGATGAAACTTAATGTCAATGTGTTTGATTCGAGAGTGGTGA
GTTGGGTTCTTTGCCAACTCAATAGCTCCTCGATTGTCTTGGAACATTTT
TGTTGGATCAGTTTGCTCGAAATCCATACCTTTGAATAAAGTTCGTAGCC
AAATAGCCTCCTGTGTTGCTTGAAATAAGGCTACATATTCAACGATCGAT
TGACGCTTGGATTTCCACGATACTGTAGAATTTCCGACTTTGAATACGTA
ACCAGAGGTAGATTTTCGTGTATCAATTTCTCCAGCCCAATCAGCATCTG
CAAAACCGTGAAGCAGAATATCTCCTGACTCAGATCCTTCGTAGATTAAG
CCATAATCAAGTGTTCCTTTCAAATAACACAGAACTCTCTATACGCCAAT
CCAATGTTGTTTGCCAGGTTTTGACATATGTTGGCTCAAAACTCCCACTG
CTGCAGATATGTCTGGGCGGGTACCGATTGATGCATAGGTCAAACATCCG
ATCGCTGATTGGTAATCCTTTAACTTTATAATCTCCTCATCGTTGGCCAA
CTTTTCGAACTTCATACTTGGTTGCAGAGGTGTGGCGACTGGTTTGCATT
TATTCATATTAAAACGATTTAGCACAGATGAAAGAAATGCATTTTGATCA
ATAGTCAATCTGCGATTTTTACGATCTCTCTTGACTTGCATGCCAAGGAT
GAAATGTACCTCACCTTTGTCCTCCATTTCGAAACGTTCCCCGAGTTTCT
GTTTCTGTTCTCGAAGAATCTGGATGTTGTTGCAGGCGATAAGTAGATCA
TCGACGTATACAGCAACGATAAGGGTAAAGGATTTGTCTCCTTCCGTGAT
TTGTTTGTGGTAGATACAAGGGTCAGCGTCGTTTCTAGTGAATCCTGATT
TTTTTTAGGAATTCGTCCATCTTTTCGTCCCAGCATCGGGCAGATTGTTT
TAGACCGTAAATGCTTTTTTGCAACTTGCATGCCATATTCGGATTGTCCC
TTTTAATGAATCCTTCAGGTTGTTTCATGAAGATGTCTTCCTCAAGATCT
TCATTTAAGAACACTGTCTTGACGTCCATTTGATGCAGTTCTAAGTCAAG
TTCGTTTGTAATTGCAAGTACGGAGCGAATTGAATTGTATTTTGCGACAG
GAACGAATACGTCGTTGTAATCTATTCCGGATTTTTGCGAATATCCTTGT
GCTACAAGACGAGCTTTGCATCTTTGAATTTTTCCATCAGCTCCTATCTT
ATGTTTGAAAACCCACTTACTTCCTACTAGGTTTTTGTCCGGTGGCATTT
CAACCAATTTCCAAGTTTCGTTTTCGATCAATGAATCGTACTCATTTTGG
ATAGCGTCCTTCCAAAGTTCAGCATTCGGGCTGGACAATGCCTTCT Coding sequence (CDS) from alignment at sc0000303:229286..230681 >TCONS_00018647 ID=TCONS_00018647|Name=TCONS_00018647|organism=Clytia hemisphaerica|type=CDS|length=510bp|location=Sequence derived from alignment at sc0000303:229286..230681 (Clytia hemisphaerica)
CTAGTGAATCCTGATTTTTTTTAGGAATTCGTCCATCTTTTCGTCCCAGC
ATCGGGCAGATTGTTTTAGACCGTAAATGCTTTTTTGCAACTTGCATGCC
ATATTCGGATTGTCCCTTTTAATGAATCCTTCAGGTTGTTTCATGAAGAT
GTCTTCCTCAAGATCTTCATTTAAGAACACTGTCTTGACGTCCATTTGAT
GCAGTTCTAAGTCAAGTTCGTTTGTAATTGCAAGTACGGAGCGAATTGAA
TTGTATTTTGCGACAGGAACGAATACGTCGTTGTAATCTATTCCGGATTT
TTGCGAATATCCTTGTGCTACAAGACGAGCTTTGCATCTTTGAATTTTTC
CATCAGCTCCTATCTTATGTTTGAAAACCCACTTACTTCCTACTAGGTTT
TTGTCCGGTGGCATTTCAACCAATTTCCAAGTTTCGTTTTCGATCAATGA
ATCGTACTCATTTTGGATAGCGTCCTTCCAAAGTTCAGCATTCGGGCTGG
ACAATGCCTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018647-exon-sc0000303-1491911889:229286..230681 | TCONS_00018647-exon-sc0000303-1491911889:229286..230681 | Clytia hemisphaerica | exon |
| TCONS_00018647-exon-sc0000303-1510915933:229286..230681 | TCONS_00018647-exon-sc0000303-1510915933:229286..230681 | Clytia hemisphaerica | exon |
| TCONS_00018647-exon-sc0000303-1575043694:229286..230681 | TCONS_00018647-exon-sc0000303-1575043694:229286..230681 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000303 | supercontig | sc0000303:229286..230681 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013103 | RVT_2 |
Blast
The following BLAST results are available for this feature:
|
