TCONS_00018644 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018644
Unique NameTCONS_00018644
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length276

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018644 ID=TCONS_00018644|Name=TCONS_00018644|organism=Clytia hemisphaerica|type=transcript|length=276bp
TCTTTATGTGTTGGTTTATGAATTGTCTGATTTAAGTTTAGGTGCAtcat
aaaatctgttaaaatatatataagcTGATTGTCACAGCTTTTTGTTTGTG
TGTATGTATCGTTGATCAATGTGTGTGGAATATTGAAGTCTCCACAAATA
TAAATGTCTGGGGTGCAGTCGCTAATGGTATCAATCTTTGAAGTTATTGA
AGCGAGCATTTGAATGAACTCAGGACCATCTGATTTGTGGATTTTGTTGG
TCGGTTGTCTGTAAAGTATTCCAAGA
Run BLAST on NCBI

transcript from alignment at sc0000303:152851..153126

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018644 ID=TCONS_00018644|Name=TCONS_00018644|organism=Clytia hemisphaerica|type=transcript|length=276bp|location=Sequence derived from alignment at sc0000303:152851..153126 (Clytia hemisphaerica)
TCTTGGAATACTTTACAGACAACCGACCAACAAAATCCACAAATCAGATG
GTCCTGAGTTCATTCAAATGCTCGCTTCAATAACTTCAAAGATTGATACC
ATTAGCGACTGCACCCCAGACATTTATATTTGTGGAGACTTCAATATTCC
ACACACATTGATCAACGATACATACACACAAACAAAAAGCTGTGACAATC
AgcttatatatattttaacagattttatgaTGCACCTAAACTTAAATCAG
ACAATTCATAAACCAACACATAAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010423XLOC_010423Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018644-exon-sc0000303-1491911889:152851..153126TCONS_00018644-exon-sc0000303-1491911889:152851..153126Clytia hemisphaericaexon
TCONS_00018644-exon-sc0000303-1510915933:152851..153126TCONS_00018644-exon-sc0000303-1510915933:152851..153126Clytia hemisphaericaexon
TCONS_00018644-exon-sc0000303-1575043694:152851..153126TCONS_00018644-exon-sc0000303-1575043694:152851..153126Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:152851..153126 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.17143	2.0339	4.70969	1.73281	3.78121	4.44527	3.3519	6.14511	2.31784	1.08853	1.05656	2.08361	2.33194	0.720282	2.01561	0.836926	1.50848	2.39162	0.554291	0	1.51244	1.47543	0.59786	0	2.79918	8.27874	0.845117	0.763049	1.73624	1.1793
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018644 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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