TCONS_00018639 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018639
Unique NameTCONS_00018639
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length983

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018639 ID=TCONS_00018639|Name=TCONS_00018639|organism=Clytia hemisphaerica|type=transcript|length=983bp
TTTCTCACATCATCCTAACTAGTCTTGAACAAAGGGAATATCTATACATA
TACGTGTCTTACTTTCCAGAGTGACATCCTAATCAAATTAAGAAttattt
atgtttatttagAAGAAAATGAGTTACAAACCAAATTTAGAGATAAACAA
GATTCTCAGAGGAAAAAGAGCAGGAAGCTCTTTCCCGACTCCTCCAACAC
GTCCAAAAAAAGCAGCAACTAAAGCAGCAAAAAGAATTGACTTGAACGCC
ACGTTCTATGACTTTCCTGGTAACAATGTCCTGGATATGGAAGAAATCCC
TCAAAGTCTTCTTACAAAACTTGGAATTGGACCGGTTCAGCTATTAGAAG
ATATGACAGAACAGGAAGTACTCACGAAGATTTCAGCAGTGCTGGCTAGC
ATTctaaagaaaaaacataacatAGACTTCGACGATTCTGAAAAAGATAA
TTTGACATTTTATTACTTGAAGAAAAACGGAAAGAAAAATAACTTCCATA
AAATGGAATATGCTGATGATTATGTCATTGATGCTGCAAGTTTAAAAACA
TTTGCAGGAAAAGACTCAAAGCATCTCTATATAGTGCCATCAAGCAAATT
AGTTACAAATACCAACTCCAGCACAGTTGTCATCCCTCAATCTTCAAGAG
TTAGTAATGGAGATATTGATGATGTTGATGATGACACCTTTCCTGATTTT
CCTCCTGCCTTCAGAGAAACACCCAATAAAATTTCAACACCTCGAATTGG
AAAGGCATTACCCAAATACCAAaaggaaaaactttttgaaaggGGTTCAG
TCCAAGATTCGCTATTTAATATTGGAGAACCAGACATTGATGTTCCACAA
GTTAATTTTGATGACAAGTTCAACAGTTTATGGATGGCATTTATTTTTTT
GTCACAATCAAAGGACTTTGTGTTAACAGtgtccaaaattcttgaaaccA
AAAATGACTCTGCAGCGTATTTGGAACGATCCA
Run BLAST on NCBI

transcript from alignment at sc0000303:343573..345021-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018639 ID=TCONS_00018639|Name=TCONS_00018639|organism=Clytia hemisphaerica|type=transcript|length=1449bp|location=Sequence derived from alignment at sc0000303:343573..345021- (Clytia hemisphaerica)
TTTCTCACATCATCCTAACTAGTCTTGAACAAAGGGAATATCTATACATA
TACGTGTCTTACTTTCCAGAGTGACATCCTAATCAAATTAAGAATTATTT
ATGTTTATTTAGAAGAAAATGAGTTACAAACCAAATTTAGAGATAAACAA
GATTCTCAGAGGAAAAAGAGCAGGAAGCTCTTTCCCGACTCCTCCAACAC
GTCCAAAAAAAGCAGCAACTAAAGCAGCAAAAAGAATTGACTTGAACGCC
ACGTTCTATGACTTTCCTGGTAACAATGTCCTGGATATGGAAGAAATCCC
TCAAAGTCTTCTTACAAAACTTGGAATTGGACCGGTTCAGCTATTAGAAG
ATATGACAGAACAGGAAGTACTCACGAAGATTTCAGCAGTGCTGGCTAGC
ATTCTAAAGAAAAAACATAACATAGACTTCGACGATTCTGAAAAAGATAA
TTTGACATTTTATTACTTGAAGAAAAACGGAAAGAAAAATAACTTCCATA
AAATGGAATATGCTGATGATTATGTCATTGATGCTGCAAGTTTAAAAACA
TTTGCAGGAAAAGACTCAAAGCATCTCTATATAGTGCCATCAAGCAAATT
AGTTACAAATACCAACTCCAGCACAGTTGTCATCCCTCAATCTTCAAGAG
TTAGTAATGGAGATATTGATGATGTTGATGATGACACCTTTCCTGATTTT
CCTCCTGCCTTCAGAGAAACACCCAATAAAATTTCAACACCTCGAATTGG
AAAGGCATTACCCAAATACCAAAAGGAAAAACTTTTTGAAAGGGTAAGTA
ACCATTTTGTTGATTTTACAAAATTCTAAGTCTGTAGCAGATGGTTTCTA
TTTTTTTCCGTTCCCAAGATAGAGTTAGGCATTTCTTGATCTTCACAGGA
AATTAAATTAAGAAATAAGTCTTAACGTGTGGTTAGATTTGTGTGCATTA
ACAATGGAATGCTGCAATAATATTATTGTTTGATTATTATTGCTATATTG
TTATTATTTGATTATATTTTAGGGTTCAGTCCAAGATTCGCTATTTAATA
TTGGAGAACCAGACATTGATGTTCCACAAGGTTTGAATTTTTACTTTCAG
TATGCATTGTTGTATGCATATTTTCATGTTGATGATAATATTCAGGAATT
TTTTCTCGAAACAAAGTGGTTCAGAAATATTGTCTGGTTTAAAGTCAGGA
AACTAGATTTAAGAAATACCTCGACATATGGGTATCAAAATTCTTTTCAA
AAGAACCTTTATAATTTTTAAAGCTGATAATCCTGGATAATAACAAAAAT
CCTTTTCATTATTTTAGTTAATTTTGATGACAAGTTCAACAGTTTATGGA
TGGCATTTATTTTTTTGTCACAATCAAAGGACTTTGTGTTAACAGTGTCC
AAAATTCTTGAAACCAAAAATGACTCTGCAGCGTATTTGGAACGATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010418XLOC_010418Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018639-exon-sc0000303-1575043694:344229..345021TCONS_00018639-exon-sc0000303-1575043694:344229..345021Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1575043694:343942..343999TCONS_00018639-exon-sc0000303-1575043694:343942..343999Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1575043694:343573..343704TCONS_00018639-exon-sc0000303-1575043694:343573..343704Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1510915933:344229..345021TCONS_00018639-exon-sc0000303-1510915933:344229..345021Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1510915933:343942..343999TCONS_00018639-exon-sc0000303-1510915933:343942..343999Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1510915933:343573..343704TCONS_00018639-exon-sc0000303-1510915933:343573..343704Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1491911889:344229..345021TCONS_00018639-exon-sc0000303-1491911889:344229..345021Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1491911889:343942..343999TCONS_00018639-exon-sc0000303-1491911889:343942..343999Clytia hemisphaericaexon
TCONS_00018639-exon-sc0000303-1491911889:343573..343704TCONS_00018639-exon-sc0000303-1491911889:343573..343704Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:343573..345021 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.458369	0.223491	0.103798	0.152325	6.73768	5.47074	4.00728	3.14469	3.09007	3.55106	0	2.80849	1.5852	2.34274	1.1913	1.81556	1.13552	0.790104	1.7054	1.42766	0.973552	0.821327	0.542556	1.21055	0.550931	1.48127	0.754217	0	0.356128	0.518339
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018639 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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