TCONS_00018618 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018618
Unique NameTCONS_00018618
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1894

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018618 ID=TCONS_00018618|Name=TCONS_00018618|organism=Clytia hemisphaerica|type=transcript|length=1894bp
CCGCATTGCAGTGATTTGCtgaaatgttttgatttaaaaaaagtataaaa
atggTGGTGCAGGGACCAGAAAAAACGAATCACTTATGAGAAATCTCTGT
AgatttaatgaaattaaaagcATTCATACTTTGCAAAATTTAGCAGGTAT
GATTGGAGATGAGTCAAGTAACAACATCGTTGAGCTAGTAAAATGAAGAA
TGCTGGCAATAGTGATGATTATGGGAAAAAGTTTCAGCTTACAGATTCAC
TTTTAAAACGTGTTCTTTCACGTGAAGATTATGACAGAATAAAAACTATT
GAACCTGTTTTCGTGTACACTGATGAGCTGAATTGTAAGCCACTTAAAAA
TCCTGGATACAAGCATGCAGCTGTCTCAAGCAATTTCCTTTACATAGTTA
ATACACCAGCTAAAAATGACTCTGACATGCTATTTGTGGTTTCCTTGGAA
AATGTAGAGAATATAGAAATTATTTTCGACACTGCTGATTTTCTTCAAGG
AAACCTAAGGAAAACATCACAACACATAAAACTAAGATGCAAACAACAAC
TTTTAAACACTGAACATCTACTTTTCAAAGCAGCATCTTTAGCACTTGCT
CCTTCTGCTTCAAGAGAGACATTACGTACAGATGGTACCCTTAAACCAAC
TAAATTAACAACCTCAAAAAGTTCTTCAAACCTCTCTCTTGACAATGAGA
ATTACGGGGGACCTGTGTCTCCCAGAATCTGTAAAAGTCTCAATACTTCT
CCAACCTCAAGTTTTTCAAATACAGATTTGAACAGTCGATTAGATTCTGA
TTTTAAAGATTCAAATGATGAtatctcaaaacaaaaatcagcaAGAAGAC
CATTACCGAAACCAATGTTCGGGACGGAAATGCTTAATGCTTCTTTTACG
AGCACTGAACTTCATGGATTGAAGAGTAGTAAAAAACAGAAAGCATCAGA
AATGAGTCCTAGTAGAAGTTTGGAAAGTTTGGACATCCAAAGTgcacttt
tgaaaagaaaaccatTAACCAAATCACAAAAAgattattttctttcttct
tctttgaaTCAATCATGGAATGACATTCTAAGGAACGAACAAGGTTCAAC
AACAtcaacaaaactcaaaaatccAAACTTAGACACATTACGTAGATCAG
ATCTTAATGAATCATCAATTCATGGGGATACAAAGAAATCATTAAATCAG
TCTCAGCAAAGCCTCAATGGTAGCTtgtcttcaaaaatatttaaatcaaT
GAAAGGACAAAATACAAAACCTCGGAATCCCAATTTGGATTCATTGAGAA
TGTCAGAACCTGCCAAATCATCCAGCAATGAAAgcttgaaatctaaaaaa
gaTTCACAacttcaaagtagtctctcttcAAGGTTATTCAAATCTTCAAA
AGCAGGAAGTATGCCAACAATACACAAACATCCAACAGATCAACCTAAAA
AAACAACAGGATCAAATTATAATATCCCACACAGCTATTCTGAGGGACCA
TCAAATGTTGAGAAACCAAGGCCTTCATTGTCACATTATGAAGTTCACGT
GTTCACAGTTGCCCCTGGATCAAAAATGTTTAATGTTATTGAACAGGCAT
GGATCTATTCCATCATTACAAAGACATGCAACATGAAGGATACATCTATC
GGTATTTTATCGGCCTCTCAATTGTCACAACACAGAAAACATGAGACTGA
CCAGCTTACACAGAAATTCACTGAACTGAAACGTGAAATCCTCAACACTG
CGTCTTATGATGAATTGTTTTTGttgacaaaagaattgaaatttgcAGCT
GACAAATATTCAGTGATTCGACGGTCTACCTGGAAGTCACCAGCGTTGCT
TGGATTTTATGTCAACAAAATGCGAATATTAGTAGAATCGAAAT
Run BLAST on NCBI

transcript from alignment at sc0000303:206009..212661+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018618 ID=TCONS_00018618|Name=TCONS_00018618|organism=Clytia hemisphaerica|type=transcript|length=6653bp|location=Sequence derived from alignment at sc0000303:206009..212661+ (Clytia hemisphaerica)
CCGCATTGCAGTGATTTGCtgaaatgttttgatttaaaaaaagtataaaa
atggTGGTGCAGGGACCAGAAAAAACGAATCACTTATGAGAAATCTCTGT
AgatttaatgaaattaaaagcATTCATACTTTGCAAAATTTAGCAGGTAT
GATTGGAGATGAGTCAAGTAACAACATCGTTGAGCTAGTAAAATGAAGAA
TGCTGGCAATAGTGATGATTATGGGAAAAAGTTTCAGCTTACAGATTCAC
TTTTAAAACGTGTTCTTTCACGTGAAGATTATGACAGAATAAAAACTATT
GAACCTGTTTTCGTGTACACTGATGAGCTGAATTGTAAGCCACTTAAAAA
TCCTGGATACAAGCATGCAGCTGTCTCAAGCAATTTCCTTTACATAGTTA
ATACACCAGCTAAAAATGACTCTGACATGCTATTTGTGGTTTCCTTGGAA
AATGTAGAGAATATAGAAATTGTAAGCACGTTTTGAATAGCTTCTTTCTT
GCCTTCAAACAGGGTTACTTTCATAAAAGCAAGTGGTAAATTTGATCACC
TCTGAATGGCAGACAGTCTTCCACATCTGCAGGACCCTGccaacgcaccg
gacttaaacgaacaccggacacgcgaaagtccagtgtaaattgagaattt
tttttactaccggacttaaggaagtcggatgtctggtgtcggagaaggac
ttttttttccaccggacaatctagttctagttctagttttatatttgcat
aagacaaaaaatgcctaatctcgcaaattctacgtaaaaatacaaaaatg
aaaaggtttAATAGCTAAGATAAAGATAAATATAGAATAAATAGATGatt
ttatacaattttaaattagatttattagattaaaattcagaaaaatttaa
aaatttcaaacatagTACAGTAATAAAAAGTGTGTTAAAAATAGTATACT
AATAGGGGACGCACAATTTGCAGGGTTACATGAGAAAAGGTGTTTAAAAG
CTGAAGGAGAGCACATACTAGAATCGAGGTGAACAAGAGTCCAGCTGGTC
GCTAGAGTATAATgtagcaaaaaaacaaaaaaaaaaacataagtgTCAAA
ACACCGgatacgaccctcgacatggcccgagaattctcaggcctcttcgg
gccaagagaccctatcaattcttttggcccgaacatgacccaagtcattc
gggccatgttcgggccatgttaaatgttaaatcgattcagcatgtccagt
caaacaaaatagtacaaagtAAGATTTGTCTGtgttgtttatatcgctca
aaaaaactttacaagcttcccgtggacacgcttcagtttaaaaccaggcc
cagtttactagcaaatatttccaccctaagtatatttatgactatgtttt
cataccaaataagcatttaatatttatatgaatttacaacattcatatat
ttaatataattaagagaaaccaagtttttctcaaagaaaatgttaaaaaa
attcagtcctgaaattacacgcctgtttaaatcatgttttcaaaaattgg
cccgagtgtggcccgtgcgtggcccgcgaattctcgggccagctcaaGCT
TTACgtgaattccaataaaagttttggcccgagaattctcgggccatgtc
gagggtcgtcacCGGATATGACCATGATCCGGGTGCGTCtgggtgtttct
taattttttgtttcataaatgtctggcgtccaaaattccctgtatgcaac
acctgACTTATTGCGTCcagtgtagcgaaaggatactttttgccaccgga
caaatacaccggacagtctggtgcgtcggcagggtcgtcATCCTGCCTTG
CAATTGCATGGGACTCCGCCTGATCAATCaacctttttttctacttttta
aaaattgcatatcTGTCAACTTTGTCTCACCAAAATGCTTGAGAACTCCA
GTCAGAAAATTTTCCTTGAtaaaccaatttttcaaaaccaGAAAATAGCT
GTAATCAGGGAAATTTTTcatcagaattttttttggggaaatcgTGGAAA
TCAAggaatttttcatcccaatttttcaaattcaggaaGTTTTTCTGTTC
cgtttttcaaaaacctgaaaaaacccttttatcaggaaatcagaaaattt
tttggaaatgcaGGAGAAAATCCCGAAAATGAGGGAGATTTgtctgattt
tatttttacgCAAGAGAAATCGTTAGCATGGGTCAGGCGAGGGGAATTAA
TGAACAGGTTTACCGACGCGAAAGAATATTTGATGCCGCAAaagttcatt
attcattatttttcaatacaCATCGGCCCGAACCTTCAGTGTAAAGAAAG
TTGCCTTTTTGCCACTTTTCCccattgaaaacaaagaacctTCGGATATT
TAGACTCCCAAAACATTGTAGAATCTTTTGATTATCAAActaagagaaaa
ataaagagTTTTAACCTTTAAATCTAATCATATTTCCTTCGTGTTTAAAC
TTTCACAAAGTCATGTTCAAAAAAACGCATGATTCAAAAAggaaaccact
ttcgttttctccgaccaatcagaatgcCAATGTGAGTTAATTGTAGAACG
ACTTCAAAATCAATCAGCAGACTGAGAGGGCGCGAAAAAGTTGGCGATCG
GCTTTTTGATTGGTCTTCAGAAAAAATTATGTCATGGCACAACAATTTGT
CTACCGGAAGGTAGAAAGTCGGGCTACTTTGTTCTGTCCATATGGGAATG
TGCCCGCTCCCTTGTGGAGTACTCGGTTATGTTGTGAATCATCGTCGATC
GaaaaccaaaagtgactttaaAGAAGGTTGTGCATGTGAAAGGTGATTGC
AGATACTGGAACTGGAAATATTTCTGGATGAATAACAAAATAATGAACTT
TCattaaaatatataatgaacttttttgagcggcAGCTCGATGGCATGCG
GGCAGTCAAAGGTATCTGTTCATTAACTCTCCTCGCctagttggtctaat
gttgacattcctcttctaattttgacaccgtTCTTTGGGAATAATAGAAT
AACCTAAATTACAACCAAGAATCAGGAAAATTTGTGACATGACTTATTTC
TTCTTTTCTAGATTTTCGACACTGCTGATTTTCTTCAAGGAAACCTAAGG
AAAACATCACAACACATAAAACTAAGATGCAAACAACAACTTTTAAACAC
TGAACATCTACTTTTCAAAGCAGCATCTTTAGCACTTGCTCCTTCTGCTT
CAAGAGAGACATTACGTACAGATGGTACCCTTAAACCAACTAAATTAACA
ACCTCAAAAAGTTCTTCAAACCTCTCTCTTGACAATGAGAATTACGGGGG
ACCTGTGTCTCCCAGAATCTGTAAAAGTCTCAATACTTCTCCAACCTCAA
GTTTTTCAAATACAGATTTGAACAGTCGATTAGATTCTGATTTTAAAGAT
TCAAATGATGAtatctcaaaacaaaaatcagcaAGAAGACCATTACCGAA
ACCAATGTTCGGGACGGAAATGCTTAATGCTTCTTTTACGAGCACTGAAC
TTCATGGATTGAAGAGTAGTAAAAAACAGAAAGCATCAGAAATGAGTCCT
AGTAGAAGTTTGGAAAGTTTGGACATCCAAAGTgcacttttgaaaagaaa
accatTAACCAAATCACAAAAAgattattttctttcttcttctttgaaTC
AATCATGGAATGACATTTTAAGGAACGAACAAGGTTCAACAACATCAACA
AAANATCATGGAATGACATTCTAAGGAACGAACAAGGTTCAACAACAtca
acaaaactcaaaaatccAAACTTAGACACATTACGTAGATCAGATCTTAA
TGAATCATCAATTCATGGGGATACAAAGAAATCATTAAATCAGTCTCAGC
AAAGCCTCAATGGTAGCTtgtcttcaaaaatatttaaatcaaTGAAAGGA
CAAAATACAAAACCTCGGAATCCCAATTTGGATTCATTGAGAATGTCAGA
ACCTGCCAAATCATCCAGCAATGAAAgcttgaaatctaaaaaagaTTCAC
AacttcaaagtagtctctcttcAAGGTTATTCAAATCTTCAAAAGCAGGA
AGTATGCCAACAATACACAAACATCCAACAGATCAACCTAAAAAAACAAC
AGGATCAAATTATAATATCCCACACAGCTATTCTGAGGGACCATCAAATG
TTGAGAAACCAAGGCCTTCATTGTCACATTATGAAGTTCACGTGTTCACA
GTTGCCCCTGGATCAAAAATGTTTAATGTTATTGAACAGGCATGGATCTA
TTCCATCATTGTAAGTATAAACGATTtcttcaaagcaattttttcttGGC
AAATTATGTAAAATGTAATGGGCAAGTCTGTCGTAATCTACAGTCAGGAg
taataccttaaacaaggCGTATACCTTGTTTAGGATctaccttgtttaag
gtagggGTACCTTGTTCAAggtattttttaagatttcctCAAAAAACATC
GATTTTAAATGTGTTAAGGAAAAAGGGCATGTTGAATTTTAGCACAAAGG
AAAGAGTCCTTGATTGACCaagtagtgaaaaaattatcaaaatctacAGG
CGGAatcttttttcatctttgttttatCTTTGGAACTAGGTTTGGAACCA
TAAATTCAGGGGAAGAAGACATGAAGCAAAGCAGAATAGTTAATAATAGG
atgtaccttaaacaaggtacatgcatataccttgtttaaggtagggGTAC
CTTGTTCAAggtattttttaagatttcttgaaaaatgtCGGGTAccattt
taaattgttttgtattttttgtgtaaAGCTCTTTCTACACCCTTTAAAAA
AGCCGATTTCGTTTCATGTAGACTAGACTTTAAGGTTGTTTTAGAATTGA
AGATTGTGATCAATTCTGGCTgtagaattttctaaaaatcaccaTGGGAA
TTCAGTTTCTCGTGCTCTTTCCAATGGTATAGACGTACGAGAGAGTGCCC
TTTTTCCTAGTTTGGAAAATATTCCCACTACTTCCTAAATAGGAAGTatc
aaacaatagaaatttggaaTTCTTACTTGAACAAGGTATACGCCTTGTTT
AAGGTATTACTCCTGACTGATCTATACCAAATGTAGGGAGTTCTTTTTGC
CCACAAGAAAGAATACATTAATTTGATTAATAACATTAAGAAAcatacac
gttttcttataagaacatccaaaaccttttaagccttcgaatgttcctaa
cttttttgattttaaagccttaaaatgttcttaacatgttccttCCATTC
ATAGGCAGGAATCTCTAATACATATTCTTTTAGGACAATTCCCCATTTTT
GATGGGTTTAAGCAAAATTATACGTGTATGTGAAAAAAGCCTTAAGGATA
ATTTTTGTCATAATTCTTTTCTAGACAAAGACATGCAACATGAAGGATAC
ATCTATCGGTATTTTATCGGCCTCTCAATTGTCACAACACAGAAAACATG
AGACGTATGCCagtttctttcaattttcaaattttgagaaatcaaTTTAT
CTACGCTAATTCTTATGCTTGCAAGGGAAACAcgataaaatagaaaaata
aaaaagttattttgaagAAAGAGTGATTGCAGAAATCTCCTATTGAACCA
CAACTATGTCTGCTACAACCTCACGTACTCCTTCCACTGAATTGATCTTA
CCTaccaaattttcgcgggaacaaattttggcggaacaaattttgacata
attttatttcgtggttttttgacaaatctgcgaaattaaattccgcaaaa
cacgaatattctcaggatttaaaagtaACCATccctaaaattgttttttt
tttaataggcAATATTGTGAATAAAAAGTTCttctcaaccgcgaaattaa
attccgcaaaatttcttcccttaaggtaacctAATGCAGAATCACACCTA
CtaagaaatttctttcattgtTTTCAGTGACCAGCTTACACAGAAATTCA
CTGAACTGAAACGTGAAATCCTCAACACTGCGTCTTATGATGAATTGTTT
TTGttgacaaaagaattgaaatttgcAGCTGACAAATATTCAGTGATTCG
ACGGTCTACCTGGAAGGTTTGTGACATTGAATAttcatttagaaaaagaa
atttggttAATCGAaactctaaaataaaaaatatccataatTTTTAGACG
GAACTCCCCTGGCATTACTTTGTTTTTGGAATTAAGCACAGCACTCTTAT
AATGCACCTACCAATAAGCCACGAGTAATAAGTGCCGATTGTGCCAATGG
CGAGTATATGTGCctgtgtttttctgcgatgGAGAGGGTTAGCTTTCGAT
TTGTTTAAATCCTGATTGTCTGACTAAGGACGACCATAAATCAAACTGCG
GGTTGCTCCCACATGCTTCAGTGAGTGACTGCCGTCCTCAAAAGGTCTAt
ctacataaactcgctaatgtaaTGATATTTGACAGATGACGTAATTTAAT
CCTGGTAATTTTGAACCAAATCATCTTGTGGTGTTAGGATTGGTTGGTTG
TTTTAATTAGATAAATTGTAAATTGTGTTATTATTTACGTTTCAGTCACC
AGCGTTGCTTGGATTTTATGTCAACAAAATGCGAATATTAGTAGAATCGA
AAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010409XLOC_010409Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018618-exon-sc0000303-1491911889:206009..206479TCONS_00018618-exon-sc0000303-1491911889:206009..206479Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:206009..206479TCONS_00018618-exon-sc0000303-1510915933:206009..206479Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:206009..206479TCONS_00018618-exon-sc0000303-1575043694:206009..206479Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1491911889:209120..209722TCONS_00018618-exon-sc0000303-1491911889:209120..209722Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:209120..209722TCONS_00018618-exon-sc0000303-1510915933:209120..209722Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:209120..209722TCONS_00018618-exon-sc0000303-1575043694:209120..209722Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1491911889:209776..210318TCONS_00018618-exon-sc0000303-1491911889:209776..210318Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:209776..210318TCONS_00018618-exon-sc0000303-1510915933:209776..210318Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:209776..210318TCONS_00018618-exon-sc0000303-1575043694:209776..210318Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1491911889:211433..211512TCONS_00018618-exon-sc0000303-1491911889:211433..211512Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:211433..211512TCONS_00018618-exon-sc0000303-1510915933:211433..211512Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:211433..211512TCONS_00018618-exon-sc0000303-1575043694:211433..211512Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1491911889:211986..212124TCONS_00018618-exon-sc0000303-1491911889:211986..212124Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:211986..212124TCONS_00018618-exon-sc0000303-1510915933:211986..212124Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:211986..212124TCONS_00018618-exon-sc0000303-1575043694:211986..212124Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1491911889:212604..212661TCONS_00018618-exon-sc0000303-1491911889:212604..212661Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1510915933:212604..212661TCONS_00018618-exon-sc0000303-1510915933:212604..212661Clytia hemisphaericaexon
TCONS_00018618-exon-sc0000303-1575043694:212604..212661TCONS_00018618-exon-sc0000303-1575043694:212604..212661Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000303supercontigsc0000303:206009..212661 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.78882	5.45262	1.14254	0.721439	14.1689	9.46533	6.39141	5.60267	3.13831	3.1681	3.26628	2.68335	0.755388	2.38791	1.29552	2.14541	0.17405	1.9856	3.15533	4.54648	2.28341	4.1311	2.21511	1.95688	4.77634	2.27479	0.259424	0.776327	0.510844	1.04
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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