|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018610 ID=TCONS_00018610|Name=TCONS_00018610|organism=Clytia hemisphaerica|type=transcript|length=1354bp
TCGATGGCAGAACTTGACTTGGTACAATATCCTGAAGGAAAGATTGTTAA
CATTATCCCACAGACAACTCACGCATTCGAACTGAATTTCAAAATCCAGT
ATCATACAGTTGAACACCAGACGCAAGTGTTGGAATTCACTGATGGCTAC
GGGGTTCATAAAGGTCCTCAAATCACCATGAAAGGCGATTGGATGACGTT
CAATTATCGCGATCTAAACTCTAAGAAAGTCTTACTTCAACCTGATACCA
CTTATAACGTCACCATTCGACAATATAAGACTGGTGAAGATGAGAAAGGG
CGATTACGTATTCTAATCAATAAAGTCCAAAAATTTCCATCTTTTCTTCT
TGGCAATGTTCCGCGTTACATGAACATCAAATGTCTGATTGGTGATCCTT
TTAAGAAGTTGCCTTCAACTCCAGCTGTGGTGACTGATTTGAATTATACT
ACAACACCGGTTTATTTTGGCATAGGTACCCAGATTTTTCTACCGGAACA
TTATACAGTTGAATCAATTGAAAACTGGCCCCCTCCGAATTGGCAAGTCA
AGCTGGGGATTAAGTTAGTGGGAAATACTGGTTGGGCAGACGCATTTTAT
TTGGCAAAACCGGCAGCAGGAGACTTTGGAGGACGAATACCAAATATTCA
ATTCTCTCCAACCAATAAAATGCGCATATGGTCTCACATTGGCACTAGCA
CTCAAATCGTCTACGAGCAAGTCCTTCCATTAAACCAATGGTTTGATATC
AAAATTGAACAAAAGTTGAGAGGTGGTAATTATTACGTAATGGTTTTCAA
AGATGGTGTAAAAGTCGCCGAGGTTTTGCATATAGGATACACTGTTATAA
GTGGCCAAGTCAAAGTTACATTTAAGTCATATGGAAACATCGTGATGCGA
GATTTTGACTATGGTATTGTATAGACAATAATTTACAGTTAGAAAGTAAC
ACTGGACTTGAAATAAAACCTGGAGACagcttctcaatcccggccaaccg
AAGTCTTTAGAGTGTTTTGATAGTGGTAGCCTAATGGTAGCACAACTCAA
TAGCGCTATTAATGAATCGAGAACGCTCTACTTATCCTCGAATAAGTATG
ATGATGCAGTACCATTTGAGATAAATTTCTAACACTGTAATGGTTTCTTT
AAAGGTGTCAcagttttcgaaaaaaactcCCCTTTAAAGATGACGGATAT
AGATTAATCCATGGTTTATAAAGCTCAGTAATGGCTaacagaaaaaaaga
caaaattgatTGTGGAGCAACCAGCGCTAGGGTGAAATCAAATTATGCTA
ATGGACAATTTGGCCTGACGAGCCTTGTCGGGCAGAGAGGACAGAAATGG
TCAG Run BLAST on NCBI transcript from alignment at sc0000303:99402..103244+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018610 ID=TCONS_00018610|Name=TCONS_00018610|organism=Clytia hemisphaerica|type=transcript|length=3843bp|location=Sequence derived from alignment at sc0000303:99402..103244+ (Clytia hemisphaerica)
TCGATGGCAGGTATGTATCTATTTAACGGCTCTAtattttacataagtgt
tctcaAACACATGTTTCATGTCAGaacagtgtctccctattgttatatta
tgctgaataaaccaaaaattgtttttcttttcctctttctgaccattctt
gctccacatccgtgtcaatttaatgtgaaaaagcttgtatcaatcttatt
taaaaacaaagcctTTAAGTTTAACAAAACTTTAACAAAAATATATGTAC
CTTATCAGTTCTTTTTACActggcccttattggcgttattttgggctcgt
ggcgtaataagggccggcgtaaaagggccaagattttgcaattttaacct
aaaagcggcgttaatttttattattattatttctcaatttaaaggacttt
aggtatgattcgaaaacgaaaatccattgttttactcaatatttaaaact
tcgcaaaaatcagtGCCGTGATTCTCGtgattttcaacagtttactactg
aaaaatgatatattaatctaaattttagtcattatttactaatttgaagc
atgAGTATCCATTTTTACAGATTTTGGAgttattaacggccctaattggc
gtaagccaaAGTTAGGCTGTGGCGATTTAAGGGCCGGCGCTAAAtgggcc
ggcgttaaattagggcaagtgtaaaaagggccgataaggtacttcACGAT
AAGTCATGTTTTTTATATCTTTACCTCACCCCATAGAGGAAAAGCCTCTT
AAAAACATTGTACAGAGCTGGAGCAGTTACTGTTTAAGTACtactcaaaa
attgaaattttgtgacTGTTATTGAAAAGGTAGACCAAAATAACCCTAAG
TTTGACTAAggacacccctgtatcacagatcTGTTGAGACCCCTGCCCCT
GTGATTAATAGAATTTCCATCCCGATTGGGAATTCGAAAGAAAttctgag
gaaaaaagttccatcggGGCTCCGAGACAGGAGTGTGTCAAGGAAACTGC
CGAAAATCTAAGATCTAGAAACCaacctcgcgagccagggcgaATCGTTG
GCGGTCAGGCGGCAAAAGTGAGGGCGGGGATGGCCAGACGATTACGATAA
GCGCCTATCTATAACGTCAAAAAGCTTATCGCCCTGGGTACGAGGTTGAT
CTAGAAACCCTTTTACGTGAATATCTATCTCTCTTTAGAACTTGACTTGG
TACAATATCCTGAAGGAAAGATTGTTAACATTATCCCACAGACAACTCAC
GCATTCGAACTGAATTTCAAAATCCAGTATCATACAGTTGAACACCAGAC
GCAAGTGTTGGAATTCACTGATGGCTACGGGGTTCATAAAGGTCCTCAAA
TCACCATGAAAGGCGATTGGATGACGTTCAATTATCGCGATCTAAACTCT
AAGAAAGTCTTACTTCAACCTGATACCACTTATAACGTCACCATTCGACA
ATATAAGACTGGTGAAGATGAGAAAGGGCGATTACGTATTCTAATCAATA
AAGTCCAAAAATTTCCATCTTTTCTTCTTGGCAATGTTCCGCGTTACATG
AACATCAAATGTCTGATTGGTGATCCTTTTAAGAAGTTGCCTTCAACTCC
AGCTGTGGTGACTGATTTGAATTATACTACAACACCGGTTTATTTTGGCA
TAGGTAAGATAATGTGTCAAAGTTAGATCCATGGGCGCTACTTGCTACTA
AATACAGGCAATGAGATAAAGCCATTGGGGTTAGAGTCGAATCTCATATG
TAGGTCTCGGTTCGCGTGGTTTTTAAACAATGAATTGGAAGTAACAGATT
ATGAAATATCTCCTTTTGGGTTCGAAATTTCATCTTTCAGGAATCAGAAT
GGTCATACAttgatatctgacagggtccgtTTTCGAACTCCGACGGTCAA
CCTCCCCCGCTTTACCCGAAATTTGATATAgcccatggcgttctaaatct
agaaTAGCCCAGTCATCTCAAAATCTCGATACTTTATGTTTCACGTTGAT
TCAAGTCTTTTTACAATATTTGGCACAAATCAGGAACTCTCtcagtttta
acattagacttaagattTACGTTGAGATCaaataacttgcatcagtggag
gctaacatgcatttCCGCCACCTTAAAATGTTTGTTCTTGCATGATTTTA
TATTATCTAACCAAGCTGTTTTATTCACCCGCGATTCTGTCGGCGAGTAA
TTCGCCAAAAATACTCGCGCGGTAAATGCGAGATTCTAAAATGTTAGAGC
AGAGCTGCGAGCGGATTTGCGTTGTTCTTGCACTgtaacattgttttaaa
attttactgctCTGATTGGTcaggcatttgatggctatgcaagtttccct
ccactaaTGCAAGTTACCGATTTCACGGTATGGCCTTAGGATCTCagatc
taaaagttttaaagttttccaataaggctgagaatataacCTGGAAGTTA
TCCTAAATCGAAAAAAATGAAGCAAAGGGACAGGGGTGAAGAAGAGCAGA
TTTTTACAACAAAACACTTCTACTCGTGGTGTAAAAACATAATTACTGTG
TCGCTTAGATCTACTCTCCTAAGCAAACGTTCCTTCACCCCTGTTTACTG
CAATCCTCGTCAGAGCTTTAAATTCCGAAAAAGgctaaaatacccaaaat
tgtcaAATATTTCGGGACTGACTGTAGTTCGACCTGAAGATTAAAATATG
AAACAGAGCAAGGAAATTCAAACTATTTATGTTGACGATTTCGACTTAAA
AGTACCCTTAATCAAGCCCTTAATATTCTACCATCTCTTCAATGGTAGCC
AACATGAACTTTTTagattctattgtctttaggtgcgaaaaaatgactgg
gacggttttagggtggtagaactaaaaaaaaatgCCCACCCAGTAATTGA
TGGCTGcggtcgaaaaagtgtattCAGTGACTTGCTTGATGTGTTTATAT
ATCTCTCCATTTAGGTACCCAGATTTTTCTACCGGAACATTATACAGTTG
AATCAATTGAAAACTGGCCCCCTCCGAATTGGCAAGTCAAGCTGGGGATT
AAGTTAGTGGGAAATACTGGTTGGGCAGACGCATTTTATTTGGCAAAACC
GGCAGCAGGAGACTTTGGAGGACGAATACCAAATATTCAATTCTCTCCAA
CCAATAAAATGCGCATATGGTCTCACATTGGCACTAGCACTCAAATCGTC
TACGAGCAAGTCCTTCCATTAAACCAATGGTTTGATATCAAAATTGAACA
AAAGTTGAGAGGTGGTAATTATTACGTAATGGTTTTCAAAGATGGTGTAA
AAGTCGCCGAGGTTTTGCATATAGGATACACTGTTATAAGTGGCCAAGTC
AAAGTTACATTTAAGTCATATGGAAACATCGTGATGCGAGATTTTGACTA
TGGTATTGTATAGACAATAATTTACAGTTAGAAAGTAACACTGGACTTGA
AATAAAACCTGGAGACagcttctcaatcccggccaaccgAAGTCTTTAGA
GTGTTTTGATAGTGGTAGCCTAATGGTAGCACAACTCAATAGCGCTATTA
ATGAATCGAGAACGCTCTACTTATCCTCGAATAAGTATGATGATGCAGTA
CCATTTGAGATAAATTTCTAACACTGTAATGGTTTCTTTAAAGGTGTCAc
agttttcgaaaaaaactcCCCTTTAAAGATGACGGATATAGATTAATCCA
TGGTTTATAAAGCTCAGTAATGGCTaacagaaaaaaagacaaaattgatT
GTGGAGCAACCAGCGCTAGGGTGAAATCAAATTATGCTAATGGACAATTT
GGCCTGACGAGCCTTGTCGGGCAGAGAGGACAGAAATGGTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018610-exon-sc0000303-1491911889:99402..99411 | TCONS_00018610-exon-sc0000303-1491911889:99402..99411 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1510915933:99402..99411 | TCONS_00018610-exon-sc0000303-1510915933:99402..99411 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1575043694:99402..99411 | TCONS_00018610-exon-sc0000303-1575043694:99402..99411 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1491911889:100590..101054 | TCONS_00018610-exon-sc0000303-1491911889:100590..101054 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1510915933:100590..101054 | TCONS_00018610-exon-sc0000303-1510915933:100590..101054 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1575043694:100590..101054 | TCONS_00018610-exon-sc0000303-1575043694:100590..101054 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1491911889:102366..103244 | TCONS_00018610-exon-sc0000303-1491911889:102366..103244 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1510915933:102366..103244 | TCONS_00018610-exon-sc0000303-1510915933:102366..103244 | Clytia hemisphaerica | exon |
| TCONS_00018610-exon-sc0000303-1575043694:102366..103244 | TCONS_00018610-exon-sc0000303-1575043694:102366..103244 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000303 | supercontig | sc0000303:99402..103244 + |
Blast
The following BLAST results are available for this feature:
|
