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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018590 ID=TCONS_00018590|Name=TCONS_00018590|organism=Clytia hemisphaerica|type=transcript|length=1367bp
aatatttcaataaaatagtGAAGTTTTATTGAGGAAACAAATGAAGTCGA
CAGGTTTTGAGCTTACAGAAGTGAGCAAGTCTGCACCCAACATAGATGAT
TTGATTAAACTCTGTGAATGTCAGAGTGTCATACTTTGTGAATGGCAGAG
TGTCAATTGTCATACTCCAAGTCAAGTTCATTTCAAGTTTCGTCTGGCAA
TCGACCATGTGTAAAAAAATTGTTGCATGTGGTGGAGCAAAATCCCGTTT
TTCCCGACTGTCTGCCCGATTTTCAATTTCTAAGACCCTATCTTTACTAT
AAGATTCATTATCATTTTTGATAAAGCTCTGTCTACACTTAAAATATTCC
GCGTAATAACAACAAATATGGCAGACGAAATTTGATCTTAGCAAGAAACA
GcttggagtttttaattatctAATTTCTAATATGACATCCTGATTGGCAA
AAGGGGTATAACAGGTTATCAAGATCCAGGAATTTTTATCTGGTGTATTT
TAATTCAGATGAATTAACTTATTCTAAAACCtttccttttattttaaaac
aacAACGTAACCAACATATCGAACATCTTCCCGCCAACCACACAGCCACC
ACAGTCTACACCACCCCCATGTCCACTTaacatttttttctgttgtAAGC
AGTATTTTTTTGCCCTTATTCTACTTGTTCTTGTACTAGGCATAGCTGGG
ATCACAAATAACTTCTGTTCACGTCGTCCGATCGAccagtttaattggaa
aatactgtgtgttttctttttgataaaataaataaactctCACATTCTTT
TATACACTCCCTGACAGCTGACAATAAGGTCGTAGTAGAATGTGCAGCTT
CAAACAGTGATTTGCTGTCTGTGAAGAACTCAGTTGTTTCAAGTGTGGCA
TTTAGAGCAGTTTGTTGATGACCTGTGAAAGCCAGCAACAAACAAGTCTC
GAATACTTCAAGGAGTGCCATGGTTTCTGCCATGAGGGTACTTCTACAAA
CTCTCTTTATCTTTCGGGCGTCGGGGTGCCCAACTGAGTGGTGATATCTT
CCCattcttttcttttaagaatACAATCATTCCTCCTTGAGATATGATCC
ATCTTTCAAGTTGGCGTATGAAGCATCATCACAGAAAGCAACCAGATGAA
GTGACTTTCGTAACTGAGGGAATTTGATTGCTACTGATTGTTATTTGCAC
TTTCTTGCTGCCTTGCTAGCTTGAATCCTATCGTCAACAGTTGCACCATT
TTATGAAGTACTATGGGCGTTGGCAACNTTAGCTTGAATCCTGTCGTCAA
CAGTTGCACCATTTTGTGAAGTACTATGGGCGTTGGCGTTTCAATTGTCT
TCATACACCTCTGAGCT Run BLAST on NCBI protein sequence of TCONS_00018590-protein >TCONS_00018590-protein ID=TCONS_00018590-protein|Name=TCONS_00018590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=104bp
MGRYHHSVGHPDARKIKRVCRSTLMAETMALLEVFETCLLLAFTGHQQTA
LNATLETTEFFTDSKSLFEAAHSTTTLLSAVRECIKECESLFILSKRKHT
VFSN Run BLAST on NCBI transcript from alignment at sc0000301:185974..187340 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018590 ID=TCONS_00018590|Name=TCONS_00018590|organism=Clytia hemisphaerica|type=transcript|length=1367bp|location=Sequence derived from alignment at sc0000301:185974..187340 (Clytia hemisphaerica)
AGCTCAGAGGTGTATGAAGACAATTGAAACGCCAACGCCCATAGTACTTC
ACAAAATGGTGCAACTGTTGACGACAGGATTCAAGCTAANGTTGCCAACG
CCCATAGTACTTCATAAAATGGTGCAACTGTTGACGATAGGATTCAAGCT
AGCAAGGCAGCAAGAAAGTGCAAATAACAATCAGTAGCAATCAAATTCCC
TCAGTTACGAAAGTCACTTCATCTGGTTGCTTTCTGTGATGATGCTTCAT
ACGCCAACTTGAAAGATGGATCATATCTCAAGGAGGAATGATTGTattct
taaaagaaaagaatGGGAAGATATCACCACTCAGTTGGGCACCCCGACGC
CCGAAAGATAAAGAGAGTTTGTAGAAGTACCCTCATGGCAGAAACCATGG
CACTCCTTGAAGTATTCGAGACTTGTTTGTTGCTGGCTTTCACAGGTCAT
CAACAAACTGCTCTAAATGCCACACTTGAAACAACTGAGTTCTTCACAGA
CAGCAAATCACTGTTTGAAGCTGCACATTCTACTACGACCTTATTGTCAG
CTGTCAGGGAGTGTATAAAAGAATGTGagagtttatttattttatcaaaa
agaaaacacacagtattttccaattaaactggTCGATCGGACGACGTGAA
CAGAAGTTATTTGTGATCCCAGCTATGCCTAGTACAAGAACAAGTAGAAT
AAGGGCAAAAAAATACTGCTTacaacagaaaaaaatgttAAGTGGACATG
GGGGTGGTGTAGACTGTGGTGGCTGTGTGGTTGGCGGGAAGATGTTCGAT
ATGTTGGTTACGTTgttgttttaaaataaaaggaaaGGTTTTAGAATAAG
TTAATTCATCTGAATTAAAATACACCAGATAAAAATTCCTGGATCTTGAT
AACCTGTTATACCCCTTTTGCCAATCAGGATGTCATATTAGAAATTagat
aattaaaaactccaagCTGTTTCTTGCTAAGATCAAATTTCGTCTGCCAT
ATTTGTTGTTATTACGCGGAATATTTTAAGTGTAGACAGAGCTTTATCAA
AAATGATAATGAATCTTATAGTAAAGATAGGGTCTTAGAAATTGAAAATC
GGGCAGACAGTCGGGAAAAACGGGATTTTGCTCCACCACATGCAACAATT
TTTTTACACATGGTCGATTGCCAGACGAAACTTGAAATGAACTTGACTTG
GAGTATGACAATTGACACTCTGCCATTCACAAAGTATGACACTCTGACAT
TCACAGAGTTTAATCAAATCATCTATGTTGGGTGCAGACTTGCTCACTTC
TGTAAGCTCAAAACCTGTCGACTTCATTTGTTTCCTCAATAAAACTTCac
tattttattgaaatatt Coding sequence (CDS) from alignment at sc0000301:185974..187340 >TCONS_00018590 ID=TCONS_00018590|Name=TCONS_00018590|organism=Clytia hemisphaerica|type=CDS|length=315bp|location=Sequence derived from alignment at sc0000301:185974..187340 (Clytia hemisphaerica)
atGGGAAGATATCACCACTCAGTTGGGCACCCCGACGCCCGAAAGATAAA
GAGAGTTTGTAGAAGTACCCTCATGGCAGAAACCATGGCACTCCTTGAAG
TATTCGAGACTTGTTTGTTGCTGGCTTTCACAGGTCATCAACAAACTGCT
CTAAATGCCACACTTGAAACAACTGAGTTCTTCACAGACAGCAAATCACT
GTTTGAAGCTGCACATTCTACTACGACCTTATTGTCAGCTGTCAGGGAGT
GTATAAAAGAATGTGagagtttatttattttatcaaaaagaaaacacaca
gtattttccaattaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018590-exon-sc0000301-1491911889:185974..187340 | TCONS_00018590-exon-sc0000301-1491911889:185974..187340 | Clytia hemisphaerica | exon |
| TCONS_00018590-exon-sc0000301-1510915933:185974..187340 | TCONS_00018590-exon-sc0000301-1510915933:185974..187340 | Clytia hemisphaerica | exon |
| TCONS_00018590-exon-sc0000301-1575043694:185974..187340 | TCONS_00018590-exon-sc0000301-1575043694:185974..187340 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:185974..187340 . |
Blast
The following BLAST results are available for this feature:
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