TCONS_00018579 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018579
Unique NameTCONS_00018579
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2553

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018579 ID=TCONS_00018579|Name=TCONS_00018579|organism=Clytia hemisphaerica|type=transcript|length=2553bp
GGAGTATGGGTAAATCAAGAACGATGAAGAGGAGAAAGTAGTTTTGAGGA
GGTTTGATGGAAACTCGAATAACAAGAAGTTCCCAAGGGTCGGACGGTCA
CCTACGGAATGGGAAGACACCAGACGACAATAACAACAAAAGCAACACAA
GCCTCAAGAATGGAGTTGGGGCCAAAGGTCTTCCAAACTCACGACAGAAG
CATCGAACGAAGCGAATACAGAGACGAAATAATGTCAACATAAAGCATAG
TTCTGCCGGTGAATTTGATGCCAATCAAGTCAAACGCTTCATATTCTTAC
AATCCCGTATTTACTGGCTTTCCTCTTTAATCGGTGATCGACAAAGACCC
TACAATTCCACCAAAGGAGTCTTGGGACTTATGTTATGGATATTCAATTT
AACTATTCATTTCGCATTAGACTTTTATGAAGCGAATACAGTGTTTCATG
TGAGTTGGGCTTCATCTATTGGTGTTTTCCTCGTCATGTTTATAATATCG
ACCATCTTTTTAATAAGACACACTGTTCGTTGGTTCATCAAGACCTTGAA
AAAGCTGTCAAAAGACAAAATATACTGCAAAACATTCGTTAAATTGAGTT
TCATTTTCAAGCTATCACCATATGCAATGTTTATACTCTCCGTCTCGGGG
GCTGGGGCGCAGTATGGTTGCTATGCTTACGATGATGCATTGACTGTCTC
TTTCACAAAAGCAGGGCCAAACGGAACGAAAGTGGAATTGGTGCCTAATG
CTGCTCACATTGTGATCAACGTTGCACGTTTCACAAGTCTCATGCACATT
TATTATATGATGTTCTTGTTGTTAGGGTTCGCTCTCATCATATTTTTCAC
AATAGTACACACGCAAAGACTCTTCAATGCACACATTGGGAACGAACTGA
AAGCACACCCTCCGTCGATGACTTTCCAAGAAGCAGTAGACGATGTAGCA
ATGCGAACCAAATTGTTAAGAAGTGCTTCCGAAAATACCACGATTATCTT
CTCGACGCTTCTATTGGCAACCAGCTTATCCTTCGTCGTGAACGCATACA
ACTTTCTATTCATTAAACGTTACGCTATTTATATTTGGTTTGCCATCGCT
CCTCTCATATGGACAGTCTCAATTCTGATTGGGTCAGCCTTTGTGACGTC
ATCCTACCAAAAGCTAAAACTAGTAGTCATGCAGTCATGGGTAGAGATAC
CAGAGAAGTATGATGAGCTGTGGAGTAGACGAACTACCTCTAATAGAATC
AATACAGCAGCATCTATAAGAAAACCCACCTTAGATTGGCGCGCCGGTCT
TGAAAACATGCGGCGTCGAAAGGCCGAACGCGAGGCCACCGAACACGCTG
CTATGGAGGAGGAAGTTTTTGAGAAGGAAGATCTAAAAGAGAACTGTGTC
GTTGATATTAACGAAGAGATGGTTAATGAACAGATCAATGTCGAtaaaga
aaacgaaaagaaagaaagtgtGTTTTCAAAGACCGTTCGAAATATCAACC
TTTTAAATAAATTCATCAAAGGTGCAAGCGACAAGAGTGCCGACGAGATC
GAAATGGGAGCTGAAGAAGTTAGAAAATCACTCTATGACAATGTGGAACA
ACAAAAAGATACTTTGACTGTTGAGCAATCAGCGACAGGTGAAGAAAGCT
CGTACAAAAGTGGTGAAGAGTTTCGTGAGACCACGGAAACAGGTGACCAG
TTAACTGTCCCTTCTTCTGATGCTGCTCTTTACAGTGATAATCCCATTGT
TAACGAACAAATACGTTTGAAAGAAGTGCAAGAATTGAGAAAACAGTCTA
TAGCcagtgaaaacaaagaaaacgacTCTTCGGCCTGGAAAAAGATTCCG
CGTATAAAATTTCGTAAAGCTACTAAACCAAACATTGAAATTGATAGGAC
TAGGGAAGAAATATCCACGTTTGAAAAGGAGAACAGCAAAAACGACGAGG
GGCCGCAAAGGACTAACAGCGTTAAATTCGATAAAGTGGTGCGCCTTGCA
CAGCAAGTCAACAAGTTCACAGACAACACAAAAAGGCAACAAATAAGACG
AAAGTTCAATTATGAAAAGTACATCAAATATCTGGAATTGACTTTAGATA
CTGTGGGATTTTCTTTGGGTAAAGTGACGATTACTTGGGACCGCGTTTCT
TTCTTTATCGTTCTTTTAATGACCCTGGTGGGTGTGTTTGCTCAGAACGC
ATTCCTCAAGTAATCAACAGTGAAGGCGATCGAAATAACTAAGATATAAA
TGATTCATTCAAACAATGATCTAACGACGGTGCATGTGCTCATGTTACCG
AAATGCATTTTCTTATCAAGATTCCGATATCAACCCTCCTCGCGTTATTG
TAGTTTCAATTTCAtagaattatttttaaaattttttgtagATAATGGTT
CTTTTACTTCTTTTTTACGCATGTACATTTCAGTgagaattcaaattcaa
aaagaaacaaCGACTTACAGAAATCTTTGGACAACACTTATCTTCTTTAC
ACGTGCAAGTATGAAAATAATGTGCAGTTAAAATCTACCCAATCCAGTTG
TNN
Run BLAST on NCBI

transcript from alignment at sc0000301:202711..208683-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018579 ID=TCONS_00018579|Name=TCONS_00018579|organism=Clytia hemisphaerica|type=transcript|length=5973bp|location=Sequence derived from alignment at sc0000301:202711..208683- (Clytia hemisphaerica)
GGAGTATGGGTAAATCAAGAACGATGAAGAGGAGAAAGTAGTTTTGAGGA
GGTTTGATGGAAACTCGAATAACAAGAAGTTCCCAAGGTAAAACATCTTA
CAGTTTACATTTTTTTAATTTGCTAAAATATAAACATTTGCAAGTAAAAA
GAAAAGTGTCAAATTCTGTCAAATTAATTTTCTGCTGTTTGTAAAATAGC
TCGATATCTAGAATACGTGCGTAGAAAGAAATTAGAATTTCTATTATATC
TTTTAATTTCACTCGGGAATTCTTTGTCGTTCCGCAGTTAATCAGAGGAT
GGGATATAATTATAAGTAATTTTATACTGGAAAAGAAAGTAAAGCAAATT
TTCTATTTTGATAAGAAAAACATACACCTTCTCCAAAAATTTATAATTGA
AAAATTGGAAAAAGAAAAAAAGTGACGTGATAATCAAATATTGATAAAGT
TGTGAGCAAGATTTGAATTGAAAAATGTTAGCAAGTAAATTGAGTAAAAA
ACTGAAACTGAGACAACTTTGGAAAGAAAACTGGGAAATTGAAGAAAAGC
CATTAAATCTAGTCGAGAACCAACTTTTCTATGTGTTATACCCGTGTTAT
AGCGGAGGAAAGGGGTCGAAAAGTTATATAAATTTCAGAAGATAAACTAT
TTTTATAGACATATACATATACATGGGGTATGTAGTATACGTTTTTTTTT
ATATAAGAACGTCAAAAATTTTCGAAGCATTCGGATTTTCTTAGTTTTTT
GGATTTGAAGCCTAAAAATGTTCTTAAAATGTTCTTATTTTCAGCATTTT
TTGAGCATTTTGATGTAATTTCTTAAGAAAATGCATGTTTTAAGTCTCCA
AAGCCTTCGAATGTTCTTAGAATGTTCTTAAAATTTTGGGCCTCGAAGCC
TGATGTTCTTATATAGTTTGTTCTTATAAAAAAAAAACGTGTACCCCAAA
AGTACAATGGGTTACTACATGCCGTATATCCGGGGGTACTAGGGTTGAGA
GCTGACGGGGGAGTGCCACCCGACTTTCGTACTTTGGACCCTTACCGGGA
CTAAAAAGGAGAAAACAAGGGAAAATTTTGATAATTTTACGACCCTTAGC
GGGACAGATTTGACCAATTTTGACCAAATTTCGATCTTTCAGGGGGTAAA
AAGTTGAAATTTTCCTATTTTCCCGACCCTTAGTGGGACTGAAATTTGAT
TTTCTGATTTTTCCCACCCTTAGCGGGACTTTGGAAGTCCAAAAATGTAC
CCTTGTCTAAGTAACCCCCCCCCCTCCGGGTACATCCTTACTGAACTTGA
AGAATATATATTTACACTTCGAAACAGGTTGACAGTTTCAGTATCTAGGT
TGGATTACTTGACTTTGTAAGGGTTGGTGAAGAAGGAAAGTTTTCGCGAT
ACATTACAGTAACGGTCTGGAATCTTGGTTAAAAGGAAAGACCAAGCGTG
ATAATTATTTAAGTTGTGAGGAGAAGATCGATTGATTTGTCAGGGGTTAA
CTTTATGAATTTTTTTCTTGCTTTTAAAAAAGAAGAAATTTAAAGAAAAA
AAATAAAGACTGCTACAATTCAGTGACACATATGTAGCATGAAATGGTTA
AATGGTGGTAGTAAAGTGGCGCATAAGGTATTAGGTAGGTGTATGTCCTC
CATTTTTATGAGTAGATAGTAACATTACTTAGCAAAACATAAGAGCATAA
GTTGAATCCATAACCCATCATTGAATGTCGACATCTGAATAAAAGCTACT
TTTCCCAATGGGCCTTTGTCTGAGACGATAAACGAAAAATCAAAAATGTC
AAATGTTGGTTCAAATTTTGGTAAATTGTATCAATTCTTTGAAAAAATTG
ACTCTGGTTATACAAGGACCAAAGAATGCAGCTTGGGAGGAACAAATAAC
GGTGCAGCTAGTAACAACAGTTTTAAAACCAAATCAAACTGATAAGCCTT
TTCGCCGCCCGCTAACGATGTTTTCTTCAGAAACATTCAAACTTTGATTA
AAAAGGAAAGAACTGCAGGGTACCCAGGCTCCCCTTTGGCGCAAGTTGTT
TTCTTGAATGAGAATGTTTTAAAAAGAATTTAAACATATAGTAAAATGAT
AGTCGTTTGGAACGTTTATTACATACAGATTAGTGGACGTTAAATTTATG
ATATTCCAGAAAAGAATAAAAGAGGGGGAAACGATGAGGAGGGTAGAAGA
TTTCTCAAGTTACAAAAGGAGCCGGGAAAATTTTGTAAGAGAAAAACTGA
AGAATTTCTAATCGGTAGTCGACTACAGAATTTTTCGGAAAATTTTGGTC
AAAAATCTGTAAAAAAAGTTTGAATAAATAATTGGGAATATAGCTCAAGA
TTTGACATAAAAAGAAAGCTTGAGTGTGTAATTCATACAACCATGTTTGA
GATTCACGAAGAAAAGGTTGGCTTGTTACCTTCTCACAGTGAACAAGAGA
AATGCTACAAAAAGCAAGTCACTTTCGATGATGACTTGTGCTGTAACGAA
GGTATAAAATTGAAAATAAATCTCAATAAAGTATAGGGGTAGAGCATTGA
AACAAAAATGTTGTCTGAAATGCCCTTTTCCCTTCTTTTCAGGGTCGGAC
GGTCACCTACGGAATGGGAAGACACCAGACGACAATAACAACAAAAGCAA
CACAAGCCTCAAGAATGGAGTTGGGGCCAAAGGTCTTCCAAACTCACGAC
AGAAGCATCGAACGAAGCGAATACAGAGACGAAATAATGTCAACATAAAG
CATAGTTCTGCCGGTGAATTTGATGCCAATCAAGTCAAACGCTTCATATT
CTTACAATCCCGTATTTACTGGCTTTCCTCTTTAATCGGTGATCGACAAA
GACCCTACAATTCCACCAAAGGAGTCTTGGGACTTATGTTATGGATATTC
AATTTAACTATTCATTTCGCATTAGACTTTTATGAAGCGAATACAGTGTT
TCATGTGAGTTGGGCTTCATCTATTGGTGTTTTCCTCGTCATGTTTATAA
TATCGACCATCTTTTTAATAAGACACACTGTTCGTTGGTTCATCAAGACC
TTGAAAAAGCTGTCAAAAGACAAAATATACTGCAAAACATTCGTTAAATT
GAGTTTCATTTTCAAGGTAAGCTACAAGCATTCGTTCATTCCTCTTTTCA
CTTTTAATGACAATTAAAGGTCATCAGTATATGGCTTAGAACTTTTCGGC
CTCATTTTTTGCTGGCTAGCTGATCTGAGTGAGGAGGGGGGATGAAAAGG
AATGGTGAGATAGAAAGTGTGTTTTACAAACCCTGGGATAACTGATTGTA
TCAAATGAAAGTAATATCATGTAAAAGTAGTGGTCAAGGCGACGATAAAG
CTCAAAACAAAACTTCATGTACTATTCAAATCGATCTTTAGAATAGCCTT
CGATTCACACTTCTATCTTTTTTTATTGCAGCTATCACCATATGCAATGT
TTATACTCTCCGTCTCGGGGGCTGGGGCGCAGTATGGTTGCTATGCTTAC
GATGATGCATTGACTGTCTCTTTCACAAAAGCAGGGCCAAACGGAACGAA
AGTGGAATTGGTGCCTAATGCTGCTCACATTGTGATCAACGTTGCACGTT
TCACAAGTCTCATGCACATTTATTATATGATGTTCTTGTTGTTAGGGTTC
GCTCTCATCATATTTTTCACAATAGTACACACGCAAAGACTCTTCAATGG
TACGTGCTATCTTCTTTTTACCCTTTTACGGGTGAACAAGTTTCTTCACA
ACTTTTTCAACGTTAAAACAATTTTGAAATTTTGATTTGAAAGCAATTTA
GATGAGAAATGTTGTGAAAAATAGGGCTCGATAAAAACTTCGTGATAAAG
GATGGTGAAAGCAAACAAAACATACAAGCAAAGACCCCCACTATTTGAGA
TATATAGGCGGAGAAAGGATTACTCTGGATTAAATACTTTAGAGAGGATA
TTATTAAACATAATCCTGTTCGTTTCCAATCAAAACAATGTTGTCGTCGG
TGTTAATGAACAGATTTGATTCACTATTAATCTTCAAAGGTTTGTAGTAG
ATTGACAAATATAATAATGGTAGTGAATAAAAAAAATCAAGCGTGATCTG
AGGGACGATGATCACATTACGATAACCTTCTTCTCTCTTCCTTCATAGCA
CACATTGGGAACGAACTGAAAGCACACCCTCCGTCGATGACTTTCCAAGA
AGCAGTAGACGATGTAGCAATGCGAACCAAATTGTTAAGAAGTGCTTCCG
AAAATACCACGGTAAGTCTCGGAGATTCTCTACTCGAAATGTCTGTAAAA
ACAAGTAGTTTTTCAATTAAGTTTAAATTATTCATTGACATTTGAAGAGG
TCACAGTTAGACTGCTATTTTAAATAGTCCCAATTTTACATTGACCATCT
TTTTGATTTCAGATTATCTTCTCGACGCTTCTATTGGCAACCAGCTTATC
CTTCGTCGTGAACGCATACAACTTTCTATTCATTAAACGTTACGCTATTT
ATATTTGGTTTGCCATCGCTCCTCTCATATGGACAGTCTCAATTCTGATT
GGGTCAGCCTTTGTGACGTCATCCTACCAAAAGCTAAAACTAGTAGTCAT
GCAGTCATGGGTAGAGATACCAGAGAAGTATGATGAGCTGTGGAGTAGAC
GAACTACCTCTAATAGAATCAATACAGCAGCATCTATAAGAAAACCCACC
TTAGATTGGCGCGCCGGTCTTGAAAACATGCGGCGTCGAAAGGCCGAACG
CGAGGCCACCGAACACGCTGCTATGGAGGAGGAAGTTTTTGAGAAGGAAG
ATCTAAAAGAGAACTGTGTCGTTGATATTAACGAAGAGATGGTTAATGAA
CAGATCAATGTCGATAAAGAAAACGAAAAGAAAGAAAGTGTGTTTTCAAA
GACCGTTCGAAATATCAACCTTTTAAATAAATTCATCAAAGGTGCAAGCG
ACAAGAGTGCCGACGAGATCGAAATGGGAGCTGAAGAAGTTAGAAAATCA
CTCTATGACAATGTGGAACAACAAAAAGATACTTTGACTGTTGAGCAATC
AGCGACAGGTGAAGAAAGCTCGTACAAAAGTGGTGAAGAGTTTCGTGAGA
CCACGGAAACAGGTGACCAGTTAACTGTCCCTTCTTCTGATGCTGCTCTT
TACAGTGATAATCCCATTGTTAACGAACAAATACGTTTGAAAGAAGTGCA
AGAATTGAGAAAACAGTCTATAGCCAGTGAAAACAAAGAAAACGACTCTT
CGGCCTGGAAAAAGATTCCGCGTATAAAATTTCGTAAAGCTACTAAACCA
AACATTGAAATTGATAGGACTAGGGAAGAAATATCCACGTTTGAAAAGGA
GAACAGCAAAAACGACGAGGGGCCGCAAAGGACTAACAGCGTTAAATTCG
ATAAAGTGGTGCGCCTTGCACAGCAAGTCAACAAGTTCACAGACAACACA
AAAAGGCAACAAATAAGACGAAAGTTCAATTATGAAAAGTACATCAAATA
TCTGGAATTGACTTTAGATACTGTGGGATTTTCTTTGGGTAAAGTGACGA
TTACTTGGGACCGCGTTTCTTTCTTTATCGTTCTTTTAATGACCCTGGTG
GGTGTGTTTGCTCAGAACGCATTCCTCAAGTAATCAACAGTGAAGGCGAT
CGAAATAACTAAGATATAAATGATTCATTCAAACAATGATCTAACGACGG
TGCATGTGCTCATGTTACCGAAATGCATTTTCTTATCAAGATTCCGATAT
CAACCCTCCTCGCGTTATTGTAGTTTCAATTTCATAGAATTATTTTTAAA
ATTTTTTGTAGATAATGGTTCTTTTACTTCTTTTTTACGCATGTACATTT
CAGTGAGAATTCAAATTCAAAAAGAAACAACGACTTACAGAAATCTTTGG
ACAACACTTATCTTCTTTACACGTGCAAGTATGAAAATAATGTGCAGTTA
AAATCTACCCAATCCAGTTGTNN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010385XLOC_010385Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018579-exon-sc0000301-1575043694:208597..208683TCONS_00018579-exon-sc0000301-1575043694:208597..208683Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1575043694:205568..206091TCONS_00018579-exon-sc0000301-1575043694:205568..206091Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1575043694:204985..205252TCONS_00018579-exon-sc0000301-1575043694:204985..205252Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1575043694:204423..204535TCONS_00018579-exon-sc0000301-1575043694:204423..204535Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1575043694:202711..204271TCONS_00018579-exon-sc0000301-1575043694:202711..204271Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1510915933:208597..208683TCONS_00018579-exon-sc0000301-1510915933:208597..208683Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1510915933:205568..206091TCONS_00018579-exon-sc0000301-1510915933:205568..206091Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1510915933:204985..205252TCONS_00018579-exon-sc0000301-1510915933:204985..205252Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1510915933:204423..204535TCONS_00018579-exon-sc0000301-1510915933:204423..204535Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1510915933:202711..204271TCONS_00018579-exon-sc0000301-1510915933:202711..204271Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1491911889:208597..208683TCONS_00018579-exon-sc0000301-1491911889:208597..208683Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1491911889:205568..206091TCONS_00018579-exon-sc0000301-1491911889:205568..206091Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1491911889:204985..205252TCONS_00018579-exon-sc0000301-1491911889:204985..205252Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1491911889:204423..204535TCONS_00018579-exon-sc0000301-1491911889:204423..204535Clytia hemisphaericaexon
TCONS_00018579-exon-sc0000301-1491911889:202711..204271TCONS_00018579-exon-sc0000301-1491911889:202711..204271Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000301supercontigsc0000301:202711..208683 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	16.0324	11.7471	9.50517	11.9093	6.7338	8.54962	1.21e-06	5.56071	1.94779	5.15136	0.201766	0.583058	0.329776	9.49285e-08	6.50135	5.00319	2.88765	0.797321	0.448659	2.9983	3.10855	2.6374	3.37124	0.207941	9.25533e-08	1.97586e-09
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018579 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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