|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018495 ID=TCONS_00018495|Name=TCONS_00018495|organism=Clytia hemisphaerica|type=transcript|length=571bp
TGAGGTTTGATTTGATTTTTCATTGCTTATTCATATTTATGACGAAAGTA
AGTGAACTTTCTTGAGTATTCATCTATTTTAGAGATTGTATTGAAGTGAG
GAGTTTGGGTAACACAACAAATACAATTCACCAGATGACTTTCGTGGTAA
TTGCTTGGTTTCTGCTTATTTCACATTCGTCGGCTACATTCACAGATCCG
CAACTCTCCAAACAAGATGGAGCCTTCGTAGATAGTTTCCATTCGTTTAA
TACAAACGATTTCACGGTTCGATTCACTCTTCTTCATTACCTGAACCCTG
ACACCTATCAATATCCAACTTATACAAGACCTGAGACTCACTTCCAATGG
TTTAAAAAGTTCGGCGATAACCGGTTGAACAGAGGGCGTGCTTACTTCAT
CCCACCCACCTCTGGGGTGTACAAATTTCATGTGGCGTGTAAAGCGAGAT
GCCAGTTTGACATCTCTGATCTTGGTTTCGATATCAAGGAATTTGACACA
GATACTGATTCGCATCACATTTCCAGAAAACAGATTGGAGCTGACATAAG
TTTCAGTAATTTTAAATcgta Run BLAST on NCBI protein sequence of TCONS_00018495-protein >TCONS_00018495-protein ID=TCONS_00018495-protein|Name=TCONS_00018495-protein|organism=Clytia hemisphaerica|type=polypeptide|length=145bp
MTFVVIAWFLLISHSSATFTDPQLSKQDGAFVDSFHSFNTNDFTVRFTLL
HYLNPDTYQYPTYTRPETHFQWFKKFGDNRLNRGRAYFIPPTSGVYKFHV
ACKARCQFDISDLGFDIKEFDTDTDSHHISRKQIGADISFSNFKS Run BLAST on NCBI transcript from alignment at sc0000301:124276..126917+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018495 ID=TCONS_00018495|Name=TCONS_00018495|organism=Clytia hemisphaerica|type=transcript|length=2642bp|location=Sequence derived from alignment at sc0000301:124276..126917+ (Clytia hemisphaerica)
TGAGGTTTGATTTGATTTTTCATTGCTTATTCATATTTATGACGAAAGTA
AGTGAACTTTCTTGAGTATTCATCTATTTTAGAGATTGTATTGAAGTGAG
GAGTTTGGGTAACACAACAAATACAATTCACCGTCAGTATTGTCATGCTT
ACCAGTTATAAACAATCAGGTTTTATTCGTATCAATTTATTGGACTAAAT
AAGGATGAAGAAAAAATTCTGAAATCGTTTTTTTTTTTCTTAAGTAATTT
TATTTTGATATTTTTTACAGTGAAATCAATAGTCTCAACCTTCAGTTTTA
GATGAGGTGTTTCGAGCTACTCCTGGCATACTTGTTAACATTCCAGTCTT
ACAAATGCCTCTATCTAACTGTTTAATGTCTTTTTTTAGCAGAGATGACT
TTCGTGGTAATTGCTTGGTTTCTGCTTATTTCACATTCGTCGGCTACATT
CACAGGTAATTTTTGGACCTACCTCTGTTTTGTTTTTAAATAAGAGTGAT
ATCGCTTACTCATCAATTTTAATTCACATTGGATTGGCAGACGCTGTCCT
GATACAAAATATGTGTCTGATATGAAACGGGAACACTTACATGTAAAAAT
AAAACTGTCCGTCCGTTCGTTCATCCGTGACCAGCTTTCCTCGGGATTGG
TTCATTAGTTTTCTCTGATTTTTTACACCGTGATGCCCAAAAAGTGACGA
TTTTCGAAAAAAAAATCTTCTCCGGCCGAAAATGCCAAAACCGGTTTTTT
GGTATTTTCTCAAGATTTCATCATTAGTTTTTTCTGACTTTTTCAACAAA
AATGCATATTAGCAAAGTCCAAAACATGGCCGAGTCTGATTTTTGAGAAC
GATTTTTTTCCGGCCGAAAATGCCGGAAATCGCTGTTTTGCAGATTTTCA
TTGGACTTTTTCCTAATATTTCTTTGTTTTTTGACAATGCCCACCATCAC
GCATGATTTAATTGTCAATAAAACTGATTTTTGAAGCCGTAACTTTCCAA
AAATCGCCGGAACAGCGGAGAATCCGCCGGAAAACGGTTTCTCTTGAATT
TCTGGAACTGTTTTTTCCATGAAATTTTGCACACTGATGCAAAATGGTAA
TACCTAAAATTTGATGGAGCCTGATTTTTGAAGAAAAAAATTTCCGGCTA
AAAATGTCGGAAATATGCTGCAAAATCCGGTTTTTTACCATTtcctcgag
atttcatcattagtttttcccgattttttgcacaaagatgcatattagTA
ATGCACAAAATGTGTTCGAGtctgatttttgataaaaaaaatttccggcc
gaaaaatCGTCGTTTATGCAGATTTTCATTGCACtcttttctaaaatttc
tttgtcttttcacTAGACTGgggtcgtttataatgcatgtaatactaata
ataaacacaaataatgatacgggatttagtttgtataaacgactggaaga
atccggtgttccagccttatagataccgggcctagctacttagaaacttg
cgtagcgagaaaacaatttattaagcaacaacaaactctcaaaataaaat
caactcaaatgaaataacacacaaatccacactcATTTTATTatcaagaa
tttcttttgagcgggaaaaaaatttaattgcgatattgacattttttttt
gctttgcgtaagtgcacaaaggtttctagacgactaaaatttactttttt
gctttatttctaatatgtctgaattagtcgtctagcttgctagactatct
tttcacacaaaaacgttattaatagcaatgcccatgATTCTATTGTCAAT
AAGATGAAATTTAATGCCTTATGCATttcgctatattttctgactgattg
ttttcattttttattgctaTCTAATTTTCATCACAAGGTAGGTCTATTCA
TCATCTAGCTATAGTTCTACCAAGACATCCTGAAAGCTTTTCAATAAGTC
GAACAAACCTCTCAAGCTTATTTGTTTCACTTTGAAAAAGGCCGGAGGGT
CCCTTTAAAGTTCCTCATCCGCaattaattttaagttttttttctcgatc
gCCCCCAACCACTGGACGTCTCAGGTGGAATTTATTACTCTTGTGTTTCT
TTTAGATATGAAAGAGGAATTGTTTTCTGATGACTTAGCTATACGTGAAT
CTTAAATAATGATACTACTTCTACTCAAGAAAGAACTCGTGTCCATACGC
ATTGCTGACTTTATTGCATCTTGAATTTTTCCCTAGTATTTTCTTAACAA
TGTATCTTCTTTATAGATCCGCAACTCTCCAAACAAGATGGAGCCTTCGT
AGATAGTTTCCATTCGTTTAATACAAACGATTTCACGGTTCGATTCACTC
TTCTTCATTACCTGAACCCTGACACCTATCAATATCCAACTTATACAAGA
CCTGAGACTCACTTCCAATGGTTTAAAAAGTTCGGCGATAACCGGTTGAA
CAGAGGGCGTGCTTACTTCATCCCACCCACCTCTGGGGTGTACAAATTTC
ATGTGGCGTGTAAAGCGAGATGCCAGTTTGACATCTCTGATCTTGGTTTC
GATATCAAGGAATTTGACACAGATACTGATTCGCATCACATTTCCAGAAA
ACAGATTGGAGCTGACATAAGTTTCAGTAATTTTAAATcgta Coding sequence (CDS) from alignment at sc0000301:124276..126917+ >TCONS_00018495 ID=TCONS_00018495|Name=TCONS_00018495|organism=Clytia hemisphaerica|type=CDS|length=870bp|location=Sequence derived from alignment at sc0000301:124276..126917+ (Clytia hemisphaerica)
ATGACTTTCGTGGTAATTGCTTGGTTTCTGCTTATTTCACATTCGTCGGC
TACATTCACAGATCCGCAACTCTCCAAACAAGATGGAGCCTTCGTAGATA
GTTTCCATTCGTTTAATACAAACGATTTCACGGTTCGATTCACTCTTCTT
CATTACCTGAACCCTGACACCTATCAATATCCAACTTATACAAGACCTGA
GACTCACTTCCAATGGTTTAAAAAGTTCGGCGATAACCGGTTGAACAGAG
GGCGTGCTTACTTCATCCCACCCACCTCTGGGGTGTACAAATTTCATGTG
GCGTGTAAAGCGAGATGCCAGTTTGACATCTCTGATCTTGGTTTCGATAT
CAAGGAATTTGACACAGATACTGATTCGCATCACATTTCCAGAAAACAGA
TTGGAGCTGACATAAGTTTCAGTAATTTTAAATcgATGACTTTCGTGGTA
ATTGCTTGGTTTCTGCTTATTTCACATTCGTCGGCTACATTCACAGATCC
GCAACTCTCCAAACAAGATGGAGCCTTCGTAGATAGTTTCCATTCGTTTA
ATACAAACGATTTCACGGTTCGATTCACTCTTCTTCATTACCTGAACCCT
GACACCTATCAATATCCAACTTATACAAGACCTGAGACTCACTTCCAATG
GTTTAAAAAGTTCGGCGATAACCGGTTGAACAGAGGGCGTGCTTACTTCA
TCCCACCCACCTCTGGGGTGTACAAATTTCATGTGGCGTGTAAAGCGAGA
TGCCAGTTTGACATCTCTGATCTTGGTTTCGATATCAAGGAATTTGACAC
AGATACTGATTCGCATCACATTTCCAGAAAACAGATTGGAGCTGACATAA
GTTTCAGTAATTTTAAATcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018495-exon-sc0000301-1491911889:124276..124407 | TCONS_00018495-exon-sc0000301-1491911889:124276..124407 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1510915933:124276..124407 | TCONS_00018495-exon-sc0000301-1510915933:124276..124407 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1575043694:124276..124407 | TCONS_00018495-exon-sc0000301-1575043694:124276..124407 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1491911889:124668..124730 | TCONS_00018495-exon-sc0000301-1491911889:124668..124730 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1510915933:124668..124730 | TCONS_00018495-exon-sc0000301-1510915933:124668..124730 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1575043694:124668..124730 | TCONS_00018495-exon-sc0000301-1575043694:124668..124730 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1491911889:126542..126917 | TCONS_00018495-exon-sc0000301-1491911889:126542..126917 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1510915933:126542..126917 | TCONS_00018495-exon-sc0000301-1510915933:126542..126917 | Clytia hemisphaerica | exon |
| TCONS_00018495-exon-sc0000301-1575043694:126542..126917 | TCONS_00018495-exon-sc0000301-1575043694:126542..126917 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:124276..126917 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR008979 | Galactose-bd-like |
Blast
The following BLAST results are available for this feature:
|
