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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018491 ID=TCONS_00018491|Name=TCONS_00018491|organism=Clytia hemisphaerica|type=transcript|length=2390bp
GAGAGTTCCTTAGATGATAAGAGATCTTTTTAATTAATGGTTAACTTGTG
CTAATTCTTGTGTTTTTGACAAAAGAAATAAATGGCATGACGTTGTGtag
aaaatttaataaaaattgcTTGatgtgattttttgttttgagtagACGAT
GTACTGTGATATGGAGAGAGATATAAAAAGTGCAGTGATCTAGTTGTTTT
TGGTGCATAGAAATGATTACATCGCTCGGCCATCCCAAGTCTCTCACATT
GTTTACTAAAGAGGACAAGGAGAGCAAAATGGAGGAGACTTTGGGTCCGC
TGAAGCAATCCTCATGGGTTGTGACACCTTATTTCATGTTGTATTTCACC
ACATACATCATCAACTCTCTTGTTTGGCCACTCTTCGTTATGGAGCGTCT
TTGCATACAAACATACACACCGCACAAAGTGAAATTCGATTTGTTTCACA
TGCAAAATACTACTCGCGGATCTTGCATCAATTTATATATGACTAacact
ttgaaaaatcaaactCATATGGATTTTGTGTCGCAGGTCAACAAAGATAC
GTTGAATTACATGATCGTGGGGTCAATTGTTGGTGCCATCATCTCACTTC
TTTCCTACTTTCTCATCTGGAAACCAGTGCTTAGGAAATGTAAACCCTTG
GCTGTTCTTTTACCACCCATATGTATCTTGTGTCAATGCGTTTTGTTCTC
TTATTCTCTGAGCATCGAAGACACCAAAACATTTAAATATGTTATTTTAT
CTGGAGTTGTGTTACCATGTTTACATAGTAATTTCCAGGGGATGTTTCTG
TTGATGTTTGAACTGACCAAAGAGCGAGAAGCAGATGTCATTCAAGTTCG
ACAGCGGGAAATTACCACAGTGAAAATCGAAGGTTCATATGCAACTATTT
TTCTCTCAATGGTGGTCAGCGGTATGATGATTGCTTTTTGTTTTGACATG
GCTTATTCAGTGTTGTTCGTGCTGCAGTTCACCATGGGTTTGTTGACCAC
ATTGTATGGTGCTATGTTGATCCCTTTCAAAGAGATTTCATGTAGCAAAG
ACACGAATGATGAGAAGGAATCGAACGAGAATGACGATGATGAAGATGAG
CATCTTCTTGATTCGTCAGACGAAGAAGAAATCTTTCTTATGAGACGCTC
GCAAGGAAAAACAGAGACCGGCCTTTTTTCGATCGAAAGTAATATTTTCA
GTGAAGCACCTATGATTTTCTCGGAAACGTCTTATCGTAAAGAATTAATG
ATTATTGTGGAGATTTCAATTTTCACTATCGCACTAATCTCAGATTCAAT
GATCAGTGGGCCGTACCTTCTTCAGGCCCCCTTCAACCTTTCTGTATCCC
AATACGGCTATTGTATAAGTGCCCAGGGTGTTGCCAAGATATTTGGTATA
CTGGTTGTGCAAACGGTGGCTTACTTCAAACCATGCAAACATGGTGGACT
TATCGTTCTTGGCGGATTGAATATCATACTTTATTACACATTATTAGGCG
TTGTTCAAGACAGTTTATCTTTATTTGGTGTTATGGTGATCAATATCTTT
GGAGGAGCTGTCTTTCCTACAATCTCATCCTTCATGAAGATCAATTTCAC
CAAGACCTTAGGAACTGTACTCGAGATTGCCATCATTAGCAGTTTGATCG
TCACTGTTGGTTTCCACGGTTTTGAATACTTTATTTATTCCATCACTAGG
AATATTTTCCCTGGCACAGTTTTCCTTCTGACGGCCGGTCTTATCTTGTT
GGGATTCATGATTGCAAGTGTCACTTATTTCACAACCACAGTCCGAAATC
GCCGTAAAACCAAAGAAATCACCGATAAACTTCTGAACGATTATCAATAA
TGTTAATGTGGCTCTGTATTCTTCATCAAGATGTTTGCTGCCATTGATGA
GCAGTGAGAAtacaaaagatattttacatTGATGGTTTTGAAACATCCAG
CAACATCCCTATAGATGTTATTACGTGGGTTCTAATTCAACGCTAGGTAA
CCAACTAAAATAACCACACGACGTAATTATTTAGTAAGGGGGTCTTGTAA
CTATTTttaattgtatatttttaaatttaatcttCTTTTTGAGGTATTGC
AAATTTATTCTTTTAAGATATTTTATACAGGAAATCTTCCCGTCGTGAAA
TATTTGATACCAACATCCTCCTTTCAAGCGTTTTTCTTTGGGTCCgaaat
tcattcatttattccACATTATTAGGgacattcaaaaatcaaaaagttct
tTCGTTTAGAATGAAACCCATCAAACAAGCAATCTTACTGACTGGCTCTG
GCATTTTTACTGGCCACCTGCCTTTTACCCTCCCGCAGGCAACTTTTTGA
ATACCCCCTTATTCATCAGCAAATGGACAAAGAAACgact Run BLAST on NCBI protein sequence of TCONS_00018491-protein >TCONS_00018491-protein ID=TCONS_00018491-protein|Name=TCONS_00018491-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MITSLGHPKSLTLFTKEDKESKMEETLGPLKQSSWVVTPYFMLYFTTYII
NSLVWPLFVMERLCIQTYTPHKVKFDLFHMQNTTRGSCINLYMTNTLKNQ
THMDFVSQVNKDTLNYMIVGSIVGAIISLLSYFLIWKPVLRKCKPLAVLL
PPICILCQCVLFSYSLSIEDTKTFKYVILSGVVLPCLHSNFQGMFLLMFE
LTKEREADVIQVRQREITTVKIEGSYATIFLSMVVSGMMIAFCFDMAYSV
LFVLQFTMGLLTTLYGAMLIPFKEISCSKDTNDEKESNENDDDEDEHLLD
SSDEEEIFLMRRSQGKTETGLFSIESNIFSEAPMIFSETSYRKELMIIVE
ISIFTIALISDSMISGPYLLQAPFNLSVSQYGYCISAQGVAKIFGILVVQ
TVAYFKPCKHGGLIVLGGLNIILYYTLLGVVQDSLSLFGVMVINIFGGAV
FPTISSFMKINFTKTLGTVLEIAIISSLIVTVGFHGFEYFIYSITRNIFP
GTVFLLTAGLILLGFMIASVTYFTTTVRNRRKTKEITDKLLNDYQ Run BLAST on NCBI transcript from alignment at sc0000301:71440..73994+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018491 ID=TCONS_00018491|Name=TCONS_00018491|organism=Clytia hemisphaerica|type=transcript|length=2555bp|location=Sequence derived from alignment at sc0000301:71440..73994+ (Clytia hemisphaerica)
GAGAGTTCCTTAGATGATAAGAGATCTTTTTAATTAATGGTTAACTTGTG
CTAATTCTTGTGTTTTTGACAAAAGAAATAAATGGCATGACGTTGTGtag
aaaatttaataaaaattgcTTGatgtgattttttgttttgagtagACGAT
GTACTGTGATATGGAGAGAGATATAAAAAGTGCAGTGATCTAGTTGTTTT
TGGTGCATAGAAATGATTACATCGCTCGGCCATCCCAAGTCTCTCACATT
GTTTACTAAAGAGGACAAGGAGAGCAAAATGGAGGAGACTTTGGGTCCGC
TGAAGCAATCCTCATGGGTTGTGACACCTTATTTCATGTTGTATTTCACC
ACATACATCATCAACTCTCTTGTTTGGCCACTCTTCGTTATGGAGCGTCT
TTGCATACAAACATACACACCGCACAAAGTGAAATTCGATTTGTTTCACA
TGCAAAATACTACTCGCGGATCTTGCATCAATTTATATATGACTAacact
ttgaaaaatcaaactCATATGGATTTTGTGTCGCAGGTCAACAAAGATAC
GTTGAATTACATGATCGTGGGGTCAATTGTTGGTGCCATCATCTCACTTC
TTTCCTACTTTCTCATCTGGAAACCAGTGCTTAGGAAATGTAAACCCTTG
GCTGTTCTTTTACCACCCATATGTATCTTGTGTCAATGCGTTTTGTTCTC
TTATTCTCTGAGCATCGAAGACACCAAAACATTTAAATATGTTATTTTAT
CTGGAGTTGTGTTACCATGTTTACATAGTAATTTCCAGGGGATGTTTCTG
TTGATGTTTGAACTGACCAAAGAGCGAGAAGCAGATGTCATTCAAGTTCG
ACAGCGGGAAATTACCACAGTGAAAATCGAAGGTTCATATGCAACTATTT
TTCTCTCAATGGTGGTCAGCGGTATGATGATTGCTTTTTGTTTTGACATG
GCTTATTCAGTGTTGTTCGTGCTGCAGTTCACCATGGGTTTGTTGACCAC
ATTGTATGGTGCTATGTTGATCCCTTTCAAAGAGATTTCATGTAGCAAAG
ACACGAATGATGAGAAGGAATCGAACGAGAATGACGATGATGAAGATGAG
CATCTTCTTGATTCGTCAGACGAAGAAGAAATCTTTCTTATGAGACGCTC
GCAAGGAAAAACAGAGACCGGCCTTTTTTCGATCGAAAGTAATATTTTCA
GTGAAGCACCTATGATTTTCTCGGAAACGTCTTATCGTAAAGAATTAATG
ATTATTGTGGAGATTTCAATTTTCACTATCGCACTAATCTCAGATTCAAT
GATCAGTGGGCCGTACCTTCTTCAGGCCCCCTTCAACCTTTCTGTATCCC
AATACGGCTATTGTATAAGTGCCCAGGGTGTTGCCAAGATATTTGGTATA
CTGGTTGTGCAAACGGTGGCTTACTTCAAACCATGCAAACATGGTGGACT
TATCGTTCTTGGCGGATTGAATATCATACTTTATTACACATTATTAGGNT
GCAAACGGTGGCTTACTTCAAACCATGCAAACATGGTGGACTTATCGTTC
TTGGCGGATTGAATATCATACTTTATTACACATTATTAGGCGTTGTTCAA
GACAGTTTATCTTTATTTGGTGTTATGGTGATCAATATCTTTGGAGGAGC
TGTCTTTCCTACAATCTCATCCTTCATGAAGATCAATTTCACCAAGACCT
TAGGAACTGTACTCGAGATTGCCATCATTAGCAGTTTGATCGTCACTGTT
GGTTTCCACGGTTTTGAATACTTTATTTATTCCATCACTAGGAATATTTT
CCCTGGCACAGTTTTCCTTCTGACGGCCGGTCTTATCTTGTTGGGATTCA
TGATTGCAAGTGTCACTTATTTCACAACCACAGTCCGAAATCGCCGTAAA
ACCAAAGAAATCACCGATAAACTTCTGAACGATTATCAATAATGTTAATG
TGGCTCTGTATTCTTCATCAAGATGTTTGCTGCCATTGATGAGCAGTGAG
AAtacaaaagatattttacatTGATGGTTTTGAAACATCCAGCAACATGC
CTATAGATGTTATTACGTGGGNGAAtacaaaagatattttacatTGATGG
TTTTGAAACATCCAGCAACATCCCTATAGATGTTATTACGTGGGTTCTAA
TTCAACGCTAGGTAACCAACTAAAATAACCACACGACGTAATTATTTAGT
AAGGGGGTCTTGTAACTATTTttaattgtatatttttaaatttaatcttC
TTTTTGAGGTATTGCAAATTTATTCTTTTAAGATATTTTATACAGGAAAT
CTTCCCGTCGTGAAATATTTGATACCAACATCCTCCTTTCAAGCGTTTTT
CTTTGGGTCCgaaattcattcatttattccACATTATTAGGgacattcaa
aaatcaaaaagttcttTCGTTTAGAATGAAACCCATCAAACAAGCAATCT
TACTGACTGGCTCTGGCATTTTTACTGGCCACCTGCCTTTTACCCTCCCG
CAGGCAACTTTTTGAATACCCCCTTATTCATCAGCAAATGGACAAAGAAA
Cgact Coding sequence (CDS) from alignment at sc0000301:71440..73994+ >TCONS_00018491 ID=TCONS_00018491|Name=TCONS_00018491|organism=Clytia hemisphaerica|type=CDS|length=3276bp|location=Sequence derived from alignment at sc0000301:71440..73994+ (Clytia hemisphaerica)
ATGATTACATCGCTCGGCCATCCCAAGTCTCTCACATTGTTTACTAAAGA
GGACAAGGAGAGCAAAATGGAGGAGACTTTGGGTCCGCTGAAGCAATCCT
CATGGGTTGTGACACCTTATTTCATGTTGTATTTCACCACATACATCATC
AACTCTCTTGTTTGGCCACTCTTCGTTATGGAGCGTCTTTGCATACAAAC
ATACACACCGCACAAAGTGAAATTCGATTTGTTTCACATGCAAAATACTA
CTCGCGGATCTTGCATCAATTTATATATGACTAacactttgaaaaatcaa
actCATATGGATTTTGTGTCGCAGGTCAACAAAGATACGTTGAATTACAT
GATCGTGGGGTCAATTGTTGGTGCCATCATCTCACTTCTTTCCTACTTTC
TCATCTGGAAACCAGTGCTTAGGAAATGTAAACCCTTGGCTGTTCTTTTA
CCACCCATATGTATCTTGTGTCAATGCGTTTTGTTCTCTTATTCTCTGAG
CATCGAAGACACCAAAACATTTAAATATGTTATTTTATCTGGAGTTGTGT
TACCATGTTTACATAGTAATTTCCAGGGGATGTTTCTGTTGATGTTTGAA
CTGACCAAAGAGCGAGAAGCAGATGTCATTCAAGTTCGACAGCGGGAAAT
TACCACAGTGAAAATCGAAGGTTCATATGCAACTATTTTTCTCTCAATGG
TGGTCAGCGGTATGATGATTGCTTTTTGTTTTGACATGGCTTATTCAGTG
TTGTTCGTGCTGCAGTTCACCATGGGTTTGTTGACCACATTGTATGGTGC
TATGTTGATCCCTTTCAAAGAGATTTCATGTAGCAAAGACACGAATGATG
AGAAGGAATCGAACGAGAATGACGATGATGAAGATGAGCATCTTCTTGAT
TCGTCAGACGAAGAAGAAATCTTTCTTATGAGACGCTCGCAAGGAAAAAC
AGAGACCGGCCTTTTTTCGATCGAAAGTAATATTTTCAGTGAAGCACCTA
TGATTTTCTCGGAAACGTCTTATCGTAAAGAATTAATGATTATTGTGGAG
ATTTCAATTTTCACTATCGCACTAATCTCAGATTCAATGATCAGTGGGCC
GTACCTTCTTCAGGCCCCCTTCAACCTTTCTGTATCCCAATACGGCTATT
GTATAAGTGCCCAGGGTGTTGCCAAGATATTTGGTATACTGGTTGTGCAA
ACGGTGGCTTACTTCAAACCATGCAAACATGGTGGACTTATCGTTCTTGG
CGGATTGAATATCATACTTTATTACACATTATTAGGCGTTGTTCAAGACA
GTTTATCTTTATTTGGTGTTATGGTGATCAATATCTTTGGAGGAGCTGTC
TTTCCTACAATCTCATCCTTCATGAAGATCAATTTCACCAAGACCTTAGG
AACTGTACTCGAGATTGCCATCATTAGCAGTTTGATCGTCACTGTTGGTT
TCCACGGTTTTGAATACTTTATTTATTCCATCACTAGGAATATTTTCCCT
GGCACAGTTTTCCTTCTGACGGCCGGTCTTATCTTGTTGGGATTCATGAT
TGCAAGTGTCACTTATTTCACAACCACAGTCCGAAATCGCCGTAAAACCA
AAGAAATCACCGATAAACTTCTGAACGATTATCAATAAATGATTACATCG
CTCGGCCATCCCAAGTCTCTCACATTGTTTACTAAAGAGGACAAGGAGAG
CAAAATGGAGGAGACTTTGGGTCCGCTGAAGCAATCCTCATGGGTTGTGA
CACCTTATTTCATGTTGTATTTCACCACATACATCATCAACTCTCTTGTT
TGGCCACTCTTCGTTATGGAGCGTCTTTGCATACAAACATACACACCGCA
CAAAGTGAAATTCGATTTGTTTCACATGCAAAATACTACTCGCGGATCTT
GCATCAATTTATATATGACTAacactttgaaaaatcaaactCATATGGAT
TTTGTGTCGCAGGTCAACAAAGATACGTTGAATTACATGATCGTGGGGTC
AATTGTTGGTGCCATCATCTCACTTCTTTCCTACTTTCTCATCTGGAAAC
CAGTGCTTAGGAAATGTAAACCCTTGGCTGTTCTTTTACCACCCATATGT
ATCTTGTGTCAATGCGTTTTGTTCTCTTATTCTCTGAGCATCGAAGACAC
CAAAACATTTAAATATGTTATTTTATCTGGAGTTGTGTTACCATGTTTAC
ATAGTAATTTCCAGGGGATGTTTCTGTTGATGTTTGAACTGACCAAAGAG
CGAGAAGCAGATGTCATTCAAGTTCGACAGCGGGAAATTACCACAGTGAA
AATCGAAGGTTCATATGCAACTATTTTTCTCTCAATGGTGGTCAGCGGTA
TGATGATTGCTTTTTGTTTTGACATGGCTTATTCAGTGTTGTTCGTGCTG
CAGTTCACCATGGGTTTGTTGACCACATTGTATGGTGCTATGTTGATCCC
TTTCAAAGAGATTTCATGTAGCAAAGACACGAATGATGAGAAGGAATCGA
ACGAGAATGACGATGATGAAGATGAGCATCTTCTTGATTCGTCAGACGAA
GAAGAAATCTTTCTTATGAGACGCTCGCAAGGAAAAACAGAGACCGGCCT
TTTTTCGATCGAAAGTAATATTTTCAGTGAAGCACCTATGATTTTCTCGG
AAACGTCTTATCGTAAAGAATTAATGATTATTGTGGAGATTTCAATTTTC
ACTATCGCACTAATCTCAGATTCAATGATCAGTGGGCCGTACCTTCTTCA
GGCCCCCTTCAACCTTTCTGTATCCCAATACGGCTATTGTATAAGTGCCC
AGGGTGTTGCCAAGATATTTGGTATACTGGTTGTGCAAACGGTGGCTTAC
TTCAAACCATGCAAACATGGTGGACTTATCGTTCTTGGCGGATTGAATAT
CATACTTTATTACACATTATTAGGCGTTGTTCAAGACAGTTTATCTTTAT
TTGGTGTTATGGTGATCAATATCTTTGGAGGAGCTGTCTTTCCTACAATC
TCATCCTTCATGAAGATCAATTTCACCAAGACCTTAGGAACTGTACTCGA
GATTGCCATCATTAGCAGTTTGATCGTCACTGTTGGTTTCCACGGTTTTG
AATACTTTATTTATTCCATCACTAGGAATATTTTCCCTGGCACAGTTTTC
CTTCTGACGGCCGGTCTTATCTTGTTGGGATTCATGATTGCAAGTGTCAC
TTATTTCACAACCACAGTCCGAAATCGCCGTAAAACCAAAGAAATCACCG
ATAAACTTCTGAACGATTATCAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00018491-exon-sc0000301-1491911889:71440..72928 | TCONS_00018491-exon-sc0000301-1491911889:71440..72928 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1510915933:71440..72928 | TCONS_00018491-exon-sc0000301-1510915933:71440..72928 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1575043694:71440..72928 | TCONS_00018491-exon-sc0000301-1575043694:71440..72928 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1491911889:73021..73458 | TCONS_00018491-exon-sc0000301-1491911889:73021..73458 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1510915933:73021..73458 | TCONS_00018491-exon-sc0000301-1510915933:73021..73458 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1575043694:73021..73458 | TCONS_00018491-exon-sc0000301-1575043694:73021..73458 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1491911889:73532..73994 | TCONS_00018491-exon-sc0000301-1491911889:73532..73994 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1510915933:73532..73994 | TCONS_00018491-exon-sc0000301-1510915933:73532..73994 | Clytia hemisphaerica | exon |
| TCONS_00018491-exon-sc0000301-1575043694:73532..73994 | TCONS_00018491-exon-sc0000301-1575043694:73532..73994 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000301 | supercontig | sc0000301:71440..73994 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
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