|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018489 ID=TCONS_00018489|Name=TCONS_00018489|organism=Clytia hemisphaerica|type=transcript|length=1380bp
CTAAAGAGAAAAGTGTACGCAACCGTTGGAAGAAGGTGGTCAATGTAGTT
CGAGTAaccaaacaaaaacagaaagtgCGATTTATCATCGACCCCTACAT
GAGTAACGATATCAGTGAATGTCCAATCGAGACGGGCGATTGCACAGTGG
ATGAATCCGTCATTCACTATGTTGACTCCCTCACCAAGACTAAGGTTGCT
TTTTGCACTAAAGAAAGGTAGGCAAGTGGTGCGTGTAGAAAATCCCTCAT
GGGTTTATCATGTCTTTAATGACCACAATATTCCTTTAAAAAGGAAGTCT
CGATTTCACAACCATGATCGAAACCTGATTTCAGCTCTATAGGAAGTATA
CCTATCGAAgtatgcgattcagactaaagaAAGCCCTGCtttagcccggg
gtccactaaAGTCTGAACGTTGTGTgtattattgaatttttaaattacaa
tatttttaatttcaaattttagatttttctggGAGATCCTCAATTCCGAG
GTTTGGCTGAACAGAATGAGAGTTACACAAGGGAAACTACAGACTACCAT
TCTCGATTCGTTGAAACATTTGAAAGAGGGAGGACAAGTCAGAGGCTACC
AAAATACAACGTACACCACCTCCAGCGACCAAATGAAGAAATTTCTCAGA
CGTGGTACattacaaaaaatttcgaaacaatTAAGTAAGGAATCAGGCTC
TGACGTAAGTTCACAATTGTGTTTCCAATACAACTTTCACAACATTCGTT
GAGCACCATACCAACACGGCCTGCGTGTCAATCGAAACCTCTAAAGAACA
GTACACGACGGTCTTTCCTTTCTTTTTAGGACATTTGCTTTCGGTCCACT
ACAGAATACTTCTGCAAACCAGACGATGATATTTTTAAGTTGCATCCACG
ATTATCTAGTGTGACGTACATTGATTCAAAGGGACTACCAATCATCGTCA
CCAACAGTCAAATCAAATCTGTCTGTAATAACCAACCAGAGGATTCAAAG
AATGTTATAGAACACACTAACTCAACTCCTTCACTTTTTCAAATGACAGA
TATCGAACCCACCGAAATATCACAAGACAAATCCAAAGAGGATCCTGTCG
AACAGACGGGACCATCCATCACCAACTCCAAGCTACTGGAAGGGGAGAGT
CAGGAAGGAAACAGTGCTCAGTCAGGAGCAGAAAAAACAGCGAGTATCAC
GACTATAGTTGAACAGCAGACCGATTATTTCCTTCCACGAGTGAATTCGA
CCTTCATTGACGATCTGCTGCAATGCGTGAGTGAATTCAAAGTCACCAAA
GAAAGTCTAACAAATAGTAAAACTTGGCACACTGTACACGAGATTGTCAT
TACCAGAATGTAAAATACTATATaacaatt Run BLAST on NCBI protein sequence of TCONS_00018489-protein >TCONS_00018489-protein ID=TCONS_00018489-protein|Name=TCONS_00018489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=106bp
MTDIEPTEISQDKSKEDPVEQTGPSITNSKLLEGESQEGNSAQSGAEKTA
SITTIVEQQTDYFLPRVNSTFIDDLLQCVSEFKVTKESLTNSKTWHTVHE
IVITRM Run BLAST on NCBI transcript from alignment at sc0000301:34263..35696+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018489 ID=TCONS_00018489|Name=TCONS_00018489|organism=Clytia hemisphaerica|type=transcript|length=1434bp|location=Sequence derived from alignment at sc0000301:34263..35696+ (Clytia hemisphaerica)
CTAAAGAGAAAAGTGTACGCAACCGTTGGAAGAAGGTGGTCAATGTAGTT
CGAGTAaccaaacaaaaacagaaagtgCGATTTATCATCGACCCCTACAT
GAGTAACGATATCAGTGAATGTCCAATCGAGACGGGCGATTGCACAGTGG
ATGAATCCGTCATTCACTATGTTGACTCCCTCACCAAGACTAAGGTTGCT
TTTTGCACTAAAGAAAGGTAGGCAAGTGGTGCGTGTAGAAAATCCCTCAT
GGGTTTATCATGTCTTTAATGACCACAATATTCCTTTAAAAAGGAAGTCT
CGATTTCACAACCATGATCGAAACCTGATTTCAGCTCTATAGGAAGTATA
CCTATCGAAgtatgcgattcagactaaagaAAGCCCTGCtttagcccggg
gtccactaaAGTCTGAACGTTGTGTgtattattgaatttttaaattacaa
tatttttaatttcaaattttagatttttctggGAGATCCTCAATTCCGAG
GTTTGGCTGAACAGAATGAGAGTTACACAAGGGAAACTACAGACTACCAT
TCTCGATTCGTTGAAACATTTGAAAGAGGGAGGACAAGTCAGAGGCTACC
AAAATACAACGTACACCACCTCCAGCGACCAAATNGGACAAGTCAGAGGC
TACCAAAATACAACGTACACCACCTCCAGCGACCAAATGAAGAAATTTCT
CAGACGTGGTACattacaaaaaatttcgaaacaatTAAGTAAGGAATCAG
GCTCTGACGTAAGTTCACAATTGTGTTTCCAATACAACTTTCACAACATT
CGTTGAGCACCATACCAACACGGCCTGCGTGTCAATCGAAACCTCTAAAG
AACAGTACACGACGGTCTTTCCTTTCTTTTTAGGACATTTGCTTTCGGTC
CACTACAGAATACTTCTGCAAACCAGACGATGATATTTTTAAGTTGCATC
CACGATTATCTAGTGTGACGTACATTGATTCAAAGGGACTACCAATCATC
GTCACCAACAGTCAAATCAAATCTGTCTGTAATAACCAACCAGAGGATTC
AAAGAATGTTATAGAACACACTAACTCAACTCCTTCACTTTTTCAAATGA
CAGATATCGAACCCACCGAAATATCACAAGACAAATCCAAAGAGGATCCT
GTCGAACAGACGGGACCATCCATCACCAACTCCAAGCTACTGGAAGGGGA
GAGTCAGGAAGGAAACAGTGCTCAGTCAGGAGCAGAAAAAACAGCGAGTA
TCACGACTATAGTTGAACAGCAGACCGATTATTTCCTTCCACGAGTGAAT
TCGACCTTCATTGACGATCTGCTGCAATGCGTGAGTGAATTCAAAGTCAC
CAAAGAAAGTCTAACAAATAGTAAAACTTGGCACACTGTACACGAGATTG
TCATTACCAGAATGTAAAATACTATATaacaatt Coding sequence (CDS) from alignment at sc0000301:34263..35696+ >TCONS_00018489 ID=TCONS_00018489|Name=TCONS_00018489|organism=Clytia hemisphaerica|type=CDS|length=321bp|location=Sequence derived from alignment at sc0000301:34263..35696+ (Clytia hemisphaerica)
ATGACAGATATCGAACCCACCGAAATATCACAAGACAAATCCAAAGAGGA
TCCTGTCGAACAGACGGGACCATCCATCACCAACTCCAAGCTACTGGAAG
GGGAGAGTCAGGAAGGAAACAGTGCTCAGTCAGGAGCAGAAAAAACAGCG
AGTATCACGACTATAGTTGAACAGCAGACCGATTATTTCCTTCCACGAGT
GAATTCGACCTTCATTGACGATCTGCTGCAATGCGTGAGTGAATTCAAAG
TCACCAAAGAAAGTCTAACAAATAGTAAAACTTGGCACACTGTACACGAG
ATTGTCATTACCAGAATGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018489-exon-sc0000301-1491911889:34263..34856 | TCONS_00018489-exon-sc0000301-1491911889:34263..34856 | Clytia hemisphaerica | exon |
| TCONS_00018489-exon-sc0000301-1510915933:34263..34856 | TCONS_00018489-exon-sc0000301-1510915933:34263..34856 | Clytia hemisphaerica | exon |
| TCONS_00018489-exon-sc0000301-1575043694:34263..34856 | TCONS_00018489-exon-sc0000301-1575043694:34263..34856 | Clytia hemisphaerica | exon |
| TCONS_00018489-exon-sc0000301-1491911889:34911..35696 | TCONS_00018489-exon-sc0000301-1491911889:34911..35696 | Clytia hemisphaerica | exon |
| TCONS_00018489-exon-sc0000301-1510915933:34911..35696 | TCONS_00018489-exon-sc0000301-1510915933:34911..35696 | Clytia hemisphaerica | exon |
| TCONS_00018489-exon-sc0000301-1575043694:34911..35696 | TCONS_00018489-exon-sc0000301-1575043694:34911..35696 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000301 | supercontig | sc0000301:34263..35696 + |
Blast
The following BLAST results are available for this feature:
|
