TCONS_00018485 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018485
Unique NameTCONS_00018485
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length759

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018485 ID=TCONS_00018485|Name=TCONS_00018485|organism=Clytia hemisphaerica|type=transcript|length=759bp
GTGAAATAACTTGTTTTCAGACATTTTCGAATGTTATACATTCTCATCCA
CAGTTGGATGAAAAGTAAATTCTGCTAACAAcgaaaataataatttaata
aCCAATTTTATTTATGAAACAACGGTTTTTCTAACACAAACAAAAACTAA
CCCTTTCCCTCAATCTCACGTCCCCAGCAAAAAAGATCATTTTCGTTCCT
TTACAAGGTACTCTTCccttgaaattccaaaaaaaagaaaaattaaagaa
ttcaagtttccaaaaatcaaataattagGGATGGCAAATTACTTTCTCCT
atcgaagaaaaatcaaaatagcgctaacataaattaaaaaagcaaaaaaa
gccCGAAAATTAATAATTCTAGTTTCCTTCTAGCTAGTCCCCTTTTTAAT
TTCCCCATGAGCGAGCTAACCAGAATATAtatattgaaaaatgaaagaaa
cttaAAAAGCATAAGTACAAATTATAGGataattttcttcaattttgatt
gaaaaatgtaaaaaaaccaGCTGCTAGGAAAGGGAGAAGAACAACTTGGT
GTTAACAAGAGGTTCCTGACGAAGCAAAACTGAGCACAATTGGGGACAAA
GAAAATAAGGCTTGTCAAAAAAATGAATAACATATAAGAATCAAGCTGAG
TCCTCCAAATGAGACAAAGTGTTGTAAAAAGTTATGAAAGTCCAGAatct
atttttttcttccttttttttcttcttcttcgtgaaaatatgattttttt
caatcctTG
Run BLAST on NCBI

transcript from alignment at sc0000300:311068..311826

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018485 ID=TCONS_00018485|Name=TCONS_00018485|organism=Clytia hemisphaerica|type=transcript|length=759bp|location=Sequence derived from alignment at sc0000300:311068..311826 (Clytia hemisphaerica)
CAaggattgaaaaaaatcatattttcacgaagaagaagaaaaaaaaggaa
gaaaaaaatagatTCTGGACTTTCATAACTTTTTACAACACTTTGTCTCA
TTTGGAGGACTCAGCTTGATTCTTATATGTTATTCATTTTTTTGACAAGC
CTTATTTTCTTTGTCCCCAATTGTGCTCAGTTTTGCTTCGTCAGGAACCT
CTTGTTAACACCAAGTTGTTCTTCTCCCTTTCCTAGCAGCtggttttttt
acatttttcaatcaaaattgaagaaaattatCCTATAATTTGTACTTATG
CTTTTtaagtttctttcatttttcaatataTATATTCTGGTTAGCTCGCT
CATGGGGAAATTAAAAAGGGGACTAGCTAGAAGGAAACTAGAATTATTAA
TTTTCGggctttttttgcttttttaatttatgttagcgctattttgattt
ttcttcgatAGGAGAAAGTAATTTGCCATCCctaattatttgatttttgg
aaacttgaattctttaatttttcttttttttggaatttcaaggGAAGAGT
ACCTTGTAAAGGAACGAAAATGATCTTTTTTGCTGGGGACGTGAGATTGA
GGGAAAGGGTTAGTTTTTGTTTGTGTTAGAAAAACCGTTGTTTCATAAAT
AAAATTGGttattaaattattattttcgTTGTTAGCAGAATTTACTTTTC
ATCCAACTGTGGATGAGAATGTATAACATTCGAAAATGTCTGAAAACAAG
TTATTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010361XLOC_010361Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018485-exon-sc0000300-1491911889:311068..311826TCONS_00018485-exon-sc0000300-1491911889:311068..311826Clytia hemisphaericaexon
TCONS_00018485-exon-sc0000300-1510915933:311068..311826TCONS_00018485-exon-sc0000300-1510915933:311068..311826Clytia hemisphaericaexon
TCONS_00018485-exon-sc0000300-1575043694:311068..311826TCONS_00018485-exon-sc0000300-1575043694:311068..311826Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:311068..311826 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.838565	0.314513	0.0730359	0.500179	1.21784	1.71849	1.16104	1.00931	0.978428	1.48126	0.718874	0.687359	0.128701	0.222762	0.402909	0.235845	0.435813	0.397061	0	0.215261	0.374202	0.0912614	0.0739601	0.403443	0.207768	0.432666	0.176898	0.0943953	0.429573	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018485 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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