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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018481 ID=TCONS_00018481|Name=TCONS_00018481|organism=Clytia hemisphaerica|type=transcript|length=2495bp
CGTTCAGAATAAATactttctcttttgttaaaaacacAATTCCAAAATAT
GGTAGTAGAAAATATAAACAACTATCACTCTATTAACACAAAATATACTT
TAAGGTAGAAAAATATTAGTACTAGGTTCATTTGAGGTACGTTTATATAG
AGACGTGCTGCAAAGGTTAGGTAGAATTGATTTACTGAAAATGTTGAATT
GAAACTGTTGAAAAATGTGACATCAAAACTGTAAAATGTCAAGCAAGACT
AGGAGAATCAATTGAATAATCAAATTATAAAGTTACACTGACAAGATCAA
ACCAAGCCAGTCTTTATATTTGAACAACAGCAACACCTTTAATGTACACC
AATTCTAATTGAGTTCAGCAAAATGATTGAGTCTGTAACAACGAATTTTC
AATATTGAAACCAATCCTTCTAAgactttcaattttctttatccttttct
tcttccttatTATCCTCAGTGAAGATGCGGACACGAGCCGGGATATCGTC
CACATCCATGTGTTCATCATAAGTTTCTTGCAAAGTTTCATTAATATCTT
CTTCCCATTTGCGAATGATGTTCTCAATGACACTACGGTACCCTCCATTC
TTGATATCGCAATCAAAACCCAACTGTTTGTCAGTCTTGCTAAGTATTGT
TTTCCATGCTTCGCTATAGTCTTTAAACCAGtttgaaaacattgaaaaat
cgCAATAAATTTCTTGATCCATTATCCAATCATCCTCACTCCTTGCAGCT
AATTGAATGCCAAACAAAAGACCAAGAGCTTTTCTCCACTTCCTGTCACT
AATACATTTCTTTGCTTTTTCTAGATTTGGAATCATATGATCATCCCATA
TAGTATTTCCAAGAGAAGTGTTACCATACATCCAATCCATACGCAAGTTG
TAAACAGTGTTTGAGATTTTACGTGCAGCAGAACAAATAGTCTTTGGAAG
AAATACATGGTCAATGGTTAAGAAGTACTTTTTGTTGATAGGAACTTCAG
GTACTACTCCATCTTCAAAAGGATCTTGAAACAATATCAACATACAATTT
GACTGTTTTTCAAGTCGCTTTATTAACTTTTCCCAAGCTTTTTCATGTGC
AGGTATTGTTTCTGAAGCCATTGcttgatattttttattatttattctaT
CTAGTAGAACGTAGAGTTAGTATGATTGAAATCGaaaaacattacttaaa
tttaaaatcttattttcaagcTAACAAAATAATTGTCCTTATTATTAAAA
AATCTAAGTTATCTCATGTTTTTAAGAAGAATTTGGGAAATTGacccaat
atttcacaaaagtGTGACGTGAGATTCCTTGTTAATCTTGTGGTTAAGAT
AGAAATTTTTAAtgtgtttttaatcaaaaagtaAAAGTTGCTGCTATTgg
tttttcaaatgttcatcctattaaaaatgattttacccAAAAATTCTGGA
TAGGAGTAATATACATTAAAAACTATCATCTGTTAGTAATATGTTAATAA
TACTATGTACAAGGTTTGTGTGATATAccttacaaaaatgaaaatatgta
atcaaaaaatataaggaaaaaatatctaaatgtcatgataaaaaaggtta
aaaaagcacaaataaaagaatttgaataaaagcCTTGCAAGGGCAACAGT
CAAATAGCAAAATCACCCTTAAATCTAATGCTCCTCTGCATCTTAATTGT
CTATCATAGCTCCTGGTTCAGAAAAGATGCGAACACGTGCAGGAATATCA
CCGGCTTTCAtaaattcatcaaagatatcttCTAAAAGCTCATTGGTTTC
CTCTTCCCATTTACGAAGGAAATTCTCAACAATATCCCGATAACCTCCAG
GTCTGATCGTGCAATCAAATCCTAACTGCTTATCAGACTTAGTAAGCAGT
GTTTTCCAAGCTTTACTATAATTTTCAAACCACCCTGAAAATACAGGGAA
GTCACAATAAATTTCATTACTTGATATCCAGCCTTCATCACTTGCTCCTG
AAAGATGGATCCCAAACATCACAGCAAATGCATTTTTCCACTTCTTTTCA
GAGATGAATTTTTCAGCTCttttaagatttggaaacataaACTGATCCCA
AATTTCATTACCGAGATAAGTGTTGCCACCATCCCAATCTGAGCGGAACT
TGTCCACACGACTGTTGATTTTCCATGCAGTGGATGCTACAAGCTTTGGT
AAAAACACATGCTTGGTTGAGAGTAAATAATCTTTATCAATACATTCTGG
TATGTCGTCTTCATCTTCAAAAGGCTCTTCAAGCATGATCATAGTGTAGT
TGGATTCCTTTTCAAGCTCATTGACTAATTTCTCCCATACTTCTTCATGA
TTAGCCATCTTCtgttttatgataattttttttatattatttctaTAAAG
TAATACAAAAATATCGTTTAGAAGAAAATAATGcgttttgttttggttaa
atttTTGGTTACACATCTTTTACATGTCTTGGACACAGGTTTTAG Run BLAST on NCBI protein sequence of TCONS_00018481-protein >TCONS_00018481-protein ID=TCONS_00018481-protein|Name=TCONS_00018481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
MCNQKFNQNKTHYFLLNDIFVLLYRNNIKKIIIKQKMANHEEVWEKLVNE
LEKESNYTMIMLEEPFEDEDDIPECIDKDYLLSTKHVFLPKLVASTAWKI
NSRVDKFRSDWDGGNTYLGNEIWDQFMFPNLKRAEKFISEKKWKNAFAVM
FGIHLSGASDEGWISSNEIYCDFPVFSGWFENYSKAWKTLLTKSDKQLGF
DCTIRPGGYRDIVENFLRKWEEETNELLEDIFDEFMKAGDIPARVRIFSE
PGAMIDN Run BLAST on NCBI transcript from alignment at sc0000300:202951..205445 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018481 ID=TCONS_00018481|Name=TCONS_00018481|organism=Clytia hemisphaerica|type=transcript|length=2495bp|location=Sequence derived from alignment at sc0000300:202951..205445 (Clytia hemisphaerica)
CTAAAACCTGTGTCCAAGACATGTAAAAGATGTGTAACCAAaaatttaac
caaaacaaaacgCATTATTTTCTTCTAAACGATATTTTTGTATTACTTTA
tagaaataatataaaaaaaattatcataaaacaGAAGATGGCTAATCATG
AAGAAGTATGGGAGAAATTAGTCAATGAGCTTGAAAAGGAATCCAACTAC
ACTATGATCATGCTTGAAGAGCCTTTTGAAGATGAAGACGACATACCAGA
ATGTATTGATAAAGATTATTTACTCTCAACCAAGCATGTGTTTTTACCAA
AGCTTGTAGCATCCACTGCATGGAAAATCAACAGTCGTGTGGACAAGTTC
CGCTCAGATTGGGATGGTGGCAACACTTATCTCGGTAATGAAATTTGGGA
TCAGTttatgtttccaaatcttaaaaGAGCTGAAAAATTCATCTCTGAAA
AGAAGTGGAAAAATGCATTTGCTGTGATGTTTGGGATCCATCTTTCAGGA
GCAAGTGATGAAGGCTGGATATCAAGTAATGAAATTTATTGTGACTTCCC
TGTATTTTCAGGGTGGTTTGAAAATTATAGTAAAGCTTGGAAAACACTGC
TTACTAAGTCTGATAAGCAGTTAGGATTTGATTGCACGATCAGACCTGGA
GGTTATCGGGATATTGTTGAGAATTTCCTTCGTAAATGGGAAGAGGAAAC
CAATGAGCTTTTAGaagatatctttgatgaatttaTGAAAGCCGGTGATA
TTCCTGCACGTGTTCGCATCTTTTCTGAACCAGGAGCTATGATAGACAAT
TAAGATGCAGAGGAGCATTAGATTTAAGGGTGATTTTGCTATTTGACTGT
TGCCCTTGCAAGgcttttattcaaattcttttatttgtgcttttttaacc
ttttttatcatgacatttagatattttttccttatattttttgattacat
attttcatttttgtaaggTATATCACACAAACCTTGTACATAGTATTATT
AACATATTACTAACAGATGATAGTTTTTAATGTATATTACTCCTATCCAG
AATTTTTgggtaaaatcatttttaataggatgaacatttgaaaaaccAAT
AGCAGCAACTTTtactttttgattaaaaacacaTTAAAAATTTCTATCTT
AACCACAAGATTAACAAGGAATCTCACGTCACacttttgtgaaatattgg
gtCAATTTCCCAAATTCTTCTTAAAAACATGAGATAACTTAGATTTTTTA
ATAATAAGGACAATTATTTTGTTAgcttgaaaataagattttaaatttaa
gtaatgtttttCGATTTCAATCATACTAACTCTACGTTCTACTAGAtaga
ataaataataaaaaatatcaagCAATGGCTTCAGAAACAATACCTGCACA
TGAAAAAGCTTGGGAAAAGTTAATAAAGCGACTTGAAAAACAGTCAAATT
GTATGTTGATATTGTTTCAAGATCCTTTTGAAGATGGAGTAGTACCTGAA
GTTCCTATCAACAAAAAGTACTTCTTAACCATTGACCATGTATTTCTTCC
AAAGACTATTTGTTCTGCTGCACGTAAAATCTCAAACACTGTTTACAACT
TGCGTATGGATTGGATGTATGGTAACACTTCTCTTGGAAATACTATATGG
GATGATCATATGATTCCAAATCTAGAAAAAGCAAAGAAATGTATTAGTGA
CAGGAAGTGGAGAAAAGCTCTTGGTCTTTTGTTTGGCATTCAATTAGCTG
CAAGGAGTGAGGATGATTGGATAATGGATCAAGAAATTTATTGcgatttt
tcaatgttttcaaaCTGGTTTAAAGACTATAGCGAAGCATGGAAAACAAT
ACTTAGCAAGACTGACAAACAGTTGGGTTTTGATTGCGATATCAAGAATG
GAGGGTACCGTAGTGTCATTGAGAACATCATTCGCAAATGGGAAGAAGAT
ATTAATGAAACTTTGCAAGAAACTTATGATGAACACATGGATGTGGACGA
TATCCCGGCTCGTGTCCGCATCTTCACTGAGGATAataaggaagaagaaa
aggataaagaaaattgaaagtcTTAGAAGGATTGGTTTCAATATTGAAAA
TTCGTTGTTACAGACTCAATCATTTTGCTGAACTCAATTAGAATTGGTGT
ACATTAAAGGTGTTGCTGTTGTTCAAATATAAAGACTGGCTTGGTTTGAT
CTTGTCAGTGTAACTTTATAATTTGATTATTCAATTGATTCTCCTAGTCT
TGCTTGACATTTTACAGTTTTGATGTCACATTTTTCAACAGTTTCAATTC
AACATTTTCAGTAAATCAATTCTACCTAACCTTTGCAGCACGTCTCTATA
TAAACGTACCTCAAATGAACCTAGTACTAATATTTTTCTACCTTAAAGTA
TATTTTGTGTTAATAGAGTGATAGTTGTTTATATTTTCTACTACCATATT
TTGGAATTgtgtttttaacaaaagagaaagtATTTATTCTGAACG Coding sequence (CDS) from alignment at sc0000300:202951..205445 >TCONS_00018481 ID=TCONS_00018481|Name=TCONS_00018481|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0000300:202951..205445 (Clytia hemisphaerica)
ATGTGTAACCAAaaatttaaccaaaacaaaacgCATTATTTTCTTCTAAA
CGATATTTTTGTATTACTTTAtagaaataatataaaaaaaattatcataa
aacaGAAGATGGCTAATCATGAAGAAGTATGGGAGAAATTAGTCAATGAG
CTTGAAAAGGAATCCAACTACACTATGATCATGCTTGAAGAGCCTTTTGA
AGATGAAGACGACATACCAGAATGTATTGATAAAGATTATTTACTCTCAA
CCAAGCATGTGTTTTTACCAAAGCTTGTAGCATCCACTGCATGGAAAATC
AACAGTCGTGTGGACAAGTTCCGCTCAGATTGGGATGGTGGCAACACTTA
TCTCGGTAATGAAATTTGGGATCAGTttatgtttccaaatcttaaaaGAG
CTGAAAAATTCATCTCTGAAAAGAAGTGGAAAAATGCATTTGCTGTGATG
TTTGGGATCCATCTTTCAGGAGCAAGTGATGAAGGCTGGATATCAAGTAA
TGAAATTTATTGTGACTTCCCTGTATTTTCAGGGTGGTTTGAAAATTATA
GTAAAGCTTGGAAAACACTGCTTACTAAGTCTGATAAGCAGTTAGGATTT
GATTGCACGATCAGACCTGGAGGTTATCGGGATATTGTTGAGAATTTCCT
TCGTAAATGGGAAGAGGAAACCAATGAGCTTTTAGaagatatctttgatg
aatttaTGAAAGCCGGTGATATTCCTGCACGTGTTCGCATCTTTTCTGAA
CCAGGAGCTATGATAGACAATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018481-exon-sc0000300-1491911889:202951..205445 | TCONS_00018481-exon-sc0000300-1491911889:202951..205445 | Clytia hemisphaerica | exon |
| TCONS_00018481-exon-sc0000300-1510915933:202951..205445 | TCONS_00018481-exon-sc0000300-1510915933:202951..205445 | Clytia hemisphaerica | exon |
| TCONS_00018481-exon-sc0000300-1575043694:202951..205445 | TCONS_00018481-exon-sc0000300-1575043694:202951..205445 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| sc0000300 | supercontig | sc0000300:202951..205445 . |
Blast
The following BLAST results are available for this feature:
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