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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018480 ID=TCONS_00018480|Name=TCONS_00018480|organism=Clytia hemisphaerica|type=transcript|length=1586bp
CTTGAATAAACAAAGTAGTAATGTAAGTAGCAAATAAAAAATGCTACCTA
TAACCCTTCAAGGCTTTGaagaaatcttaaatattttgtatatttaaaAT
GTTGCAGTAGGTGGTTtaataaaagtttattttttgataaaaacataaaa
tatctcgTAAACaatagtcaaaaaatatttacaagtcTTAGAATATTTAT
CTTTTTGTTAAAAACATGTTATGATAAATGTAGTATCATATATTATTTGT
CTCTCAGTAAATTGGAGCAATATAATCCTGTCATCTCTAATATAAACAAG
TTttaatctaaaataaataaaaaatcaggTGTAAAACCTTTGTTGCTGTA
CTGGTGTAcatcaagaaaaaaaaccttCACAAAATACTACCTAAAATATa
atctaaaaatgaaatctaGAAATACGATATGAAAACTTTATGCAAAAAGG
TTTAAATTGTACAGGAAAAGAAATATAGCCTTATTAGCAGCAAGCAtttg
aaaattcgttttttttttcaattctcttTGTTCTCCTCAGAATCCTCTTC
CTCCTCTTCCATActatcttcttcttcatcttcatcttcatcttcatctt
catcttcatcttcttcatcatcatcttcTTCGTCATCCTCTTCATGTTCC
TCTGGTTTGGAAAAGATGTGAACACGTGCCAAATCCATGTCGTCTTCCTC
CGCAAAGTCATCAAATCTCCTCAGTGTATTGTTAGTTTCCTTCTCCCAAG
TACAAAGAAGGTCTTCAATAAACCCGCGATAACCACCAGGTTTCACAGAG
CAATTAAACCCGAGCTGTTTGTCTGTTTTGGAGAGAAGTGTTCTCCAAGC
TGTACTGTAATCAGAAAACCAACCAGAAAACACATCAAAGTCACAATATA
TCTCCTGATCATCTATCCACCCGTCATCGTAACCAGCAGCCATCTGAATC
CCAAACATGATTCCAACTGCTTTTCTCCATTTATTTTcatcaataaattt
ttttgccttttcaAGGTTAGGAACCATATGATCATCCCATATGGCATTAC
CAAGTGAAGTTCCCCCATATGGCCACTCTCTTCTGAGACGATTGATGTCT
GAATGAATTTTCCAGGCCATTTCTGTGGCAGCTTTTGGTAAGAATAAATG
GCGGGTAGTGAGGAGATATTCCTTATTAATAGCTTTGGGGATTTGATACA
AGAACGGCCTTTGTAGCATTATAAGTCCACATTTAGAGGTCTTTTCAAGT
TCCTCTACCAGTTTACCCCATGTTTGACTCTCTGGCGATTTATCTGAAGG
ATAGTAAGCTGAGGGCACAGACATGATTCTGTTTTctaattttctgtttt
tcaattttactttttttagatttaggTCTGTAAAAACAAAATTGGGAATC
ATCGCAATAAAGTTACCCTCCTTATGCAAAATAACTCCAGCCAAATCTGA
AAATACACAAGCAAATTAATAAATCTTGTTTAGTGTATATATATTGAGGC
TGATTAAGGTAAGCAtgtcaaatttatcaaaattatttctcAAGCACTGA
TCAAAACATATGTCAAGCTATACTGGGTATGCCACA Run BLAST on NCBI protein sequence of TCONS_00018480-protein >TCONS_00018480-protein ID=TCONS_00018480-protein|Name=TCONS_00018480-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
MIPNFVFTDLNLKKVKLKNRKLENRIMSVPSAYYPSDKSPESQTWGKLVE
ELEKTSKCGLIMLQRPFLYQIPKAINKEYLLTTRHLFLPKAATEMAWKIH
SDINRLRREWPYGGTSLGNAIWDDHMVPNLEKAKKFIDENKWRKAVGIMF
GIQMAAGYDDGWIDDQEIYCDFDVFSGWFSDYSTAWRTLLSKTDKQLGFN
CSVKPGGYRGFIEDLLCTWEKETNNTLRRFDDFAEEDDMDLARVHIFSKP
EEHEEDDEEDDDEEDEDEDEDEDEDEEEDSMEEEEEDSEENKEN Run BLAST on NCBI transcript from alignment at sc0000300:201017..202602 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018480 ID=TCONS_00018480|Name=TCONS_00018480|organism=Clytia hemisphaerica|type=transcript|length=1586bp|location=Sequence derived from alignment at sc0000300:201017..202602 (Clytia hemisphaerica)
TGTGGCATACCCAGTATAGCTTGACATATGTTTTGATCAGTGCTTgagaa
ataattttgataaatttgacaTGCTTACCTTAATCAGCCTCAATATATAT
ACACTAAACAAGATTTATTAATTTGCTTGTGTATTTTCAGATTTGGCTGG
AGTTATTTTGCATAAGGAGGGTAACTTTATTGCGATGATTCCCAATTTTG
TTTTTACAGAcctaaatctaaaaaaagtaaaattgaaaaacagaaaatta
gAAAACAGAATCATGTCTGTGCCCTCAGCTTACTATCCTTCAGATAAATC
GCCAGAGAGTCAAACATGGGGTAAACTGGTAGAGGAACTTGAAAAGACCT
CTAAATGTGGACTTATAATGCTACAAAGGCCGTTCTTGTATCAAATCCCC
AAAGCTATTAATAAGGAATATCTCCTCACTACCCGCCATTTATTCTTACC
AAAAGCTGCCACAGAAATGGCCTGGAAAATTCATTCAGACATCAATCGTC
TCAGAAGAGAGTGGCCATATGGGGGAACTTCACTTGGTAATGCCATATGG
GATGATCATATGGTTCCTAACCTtgaaaaggcaaaaaaatttattgatgA
AAATAAATGGAGAAAAGCAGTTGGAATCATGTTTGGGATTCAGATGGCTG
CTGGTTACGATGACGGGTGGATAGATGATCAGGAGATATATTGTGACTTT
GATGTGTTTTCTGGTTGGTTTTCTGATTACAGTACAGCTTGGAGAACACT
TCTCTCCAAAACAGACAAACAGCTCGGGTTTAATTGCTCTGTGAAACCTG
GTGGTTATCGCGGGTTTATTGAAGACCTTCTTTGTACTTGGGAGAAGGAA
ACTAACAATACACTGAGGAGATTTGATGACTTTGCGGAGGAAGACGACAT
GGATTTGGCACGTGTTCACATCTTTTCCAAACCAGAGGAACATGAAGAGG
ATGACGAAgaagatgatgatgaagaagatgaagatgaagatgaagatgaa
gatgaagatgaagaagaagatagTATGGAAGAGGAGGAAGAGGATTCTGA
GGAGAACAaagagaattgaaaaaaaaaacgaattttcaaaTGCTTGCTGC
TAATAAGGCTATATTTCTTTTCCTGTACAATTTAAACCTTTTTGCATAAA
GTTTTCATATCGTATTTCtagatttcatttttagattATATTTTAGGTAG
TATTTTGTGaaggttttttttcttgatgTACACCAGTACAGCAACAAAGG
TTTTACAcctgattttttatttattttagattaaAACTTGTTTATATTAG
AGATGACAGGATTATATTGCTCCAATTTACTGAGAGACAAATAATATATG
ATACTACATTTATCATAACATGTTTTTAACAAAAAGATAAATATTCTAAg
acttgtaaatattttttgactattGTTTAcgagatattttatgtttttat
caaaaaataaacttttattaAACCACCTACTGCAACATtttaaatataca
aaatatttaagatttcttCAAAGCCTTGAAGGGTTATAGGTAGCATTTTT
TATTTGCTACTTACATTACTACTTTGTTTATTCAAG Coding sequence (CDS) from alignment at sc0000300:201017..202602 >TCONS_00018480 ID=TCONS_00018480|Name=TCONS_00018480|organism=Clytia hemisphaerica|type=CDS|length=885bp|location=Sequence derived from alignment at sc0000300:201017..202602 (Clytia hemisphaerica)
ATGATTCCCAATTTTGTTTTTACAGAcctaaatctaaaaaaagtaaaatt
gaaaaacagaaaattagAAAACAGAATCATGTCTGTGCCCTCAGCTTACT
ATCCTTCAGATAAATCGCCAGAGAGTCAAACATGGGGTAAACTGGTAGAG
GAACTTGAAAAGACCTCTAAATGTGGACTTATAATGCTACAAAGGCCGTT
CTTGTATCAAATCCCCAAAGCTATTAATAAGGAATATCTCCTCACTACCC
GCCATTTATTCTTACCAAAAGCTGCCACAGAAATGGCCTGGAAAATTCAT
TCAGACATCAATCGTCTCAGAAGAGAGTGGCCATATGGGGGAACTTCACT
TGGTAATGCCATATGGGATGATCATATGGTTCCTAACCTtgaaaaggcaa
aaaaatttattgatgAAAATAAATGGAGAAAAGCAGTTGGAATCATGTTT
GGGATTCAGATGGCTGCTGGTTACGATGACGGGTGGATAGATGATCAGGA
GATATATTGTGACTTTGATGTGTTTTCTGGTTGGTTTTCTGATTACAGTA
CAGCTTGGAGAACACTTCTCTCCAAAACAGACAAACAGCTCGGGTTTAAT
TGCTCTGTGAAACCTGGTGGTTATCGCGGGTTTATTGAAGACCTTCTTTG
TACTTGGGAGAAGGAAACTAACAATACACTGAGGAGATTTGATGACTTTG
CGGAGGAAGACGACATGGATTTGGCACGTGTTCACATCTTTTCCAAACCA
GAGGAACATGAAGAGGATGACGAAgaagatgatgatgaagaagatgaaga
tgaagatgaagatgaagatgaagatgaagaagaagatagTATGGAAGAGG
AGGAAGAGGATTCTGAGGAGAACAaagagaattga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018480-exon-sc0000300-1491911889:201017..202602 | TCONS_00018480-exon-sc0000300-1491911889:201017..202602 | Clytia hemisphaerica | exon |
| TCONS_00018480-exon-sc0000300-1510915933:201017..202602 | TCONS_00018480-exon-sc0000300-1510915933:201017..202602 | Clytia hemisphaerica | exon |
| TCONS_00018480-exon-sc0000300-1575043694:201017..202602 | TCONS_00018480-exon-sc0000300-1575043694:201017..202602 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000300 | supercontig | sc0000300:201017..202602 . |
Blast
The following BLAST results are available for this feature:
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