TCONS_00018479 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018479
Unique NameTCONS_00018479
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length445

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018479 ID=TCONS_00018479|Name=TCONS_00018479|organism=Clytia hemisphaerica|type=transcript|length=445bp
AAACAAAAGAGAGAAGCCAGTCTAAattcaaaaactattttttcttttca
aggCAAAAATGGTAACCACAAGCTATTTTTCTTCTTATAATATAAACTTT
AAAGGACACATAAAGACCCTTGGCGTCTATGCTTGGTGTCATAACCACTG
AGCACTCAACACGATTACAAGCAAGAGCTCATTCTGTGATTGTTGCCTGA
TCCATCAAAGTTCGTTGCCTAGAATCGACCTTTTCCGttataaatctttc
aaatcaagTTCTAAAAGTAATAAGCGATTAATTCTTTCTTTCCTAATGCA
AGCAAAAGGAGTTAGGATGGGGATGATCTTCCTTTTTGAATGGACTCTGA
ATACATGGTCTTTCTCCCACATCGCTTGATTTATTTCATTTGCTTTAACA
TTCACTCTTTAACTTGTTCTCTTTCCATTTTGGTTAGGTCTTCCC
Run BLAST on NCBI

transcript from alignment at sc0000300:199830..200274

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018479 ID=TCONS_00018479|Name=TCONS_00018479|organism=Clytia hemisphaerica|type=transcript|length=445bp|location=Sequence derived from alignment at sc0000300:199830..200274 (Clytia hemisphaerica)
GGGAAGACCTAACCAAAATGGAAAGAGAACAAGTTAAAGAGTGAATGTTA
AAGCAAATGAAATAAATCAAGCGATGTGGGAGAAAGACCATGTATTCAGA
GTCCATTCAAAAAGGAAGATCATCCCCATCCTAACTCCTTTTGCTTGCAT
TAGGAAAGAAAGAATTAATCGCTTATTACTTTTAGAActtgatttgaaag
atttataaCGGAAAAGGTCGATTCTAGGCAACGAACTTTGATGGATCAGG
CAACAATCACAGAATGAGCTCTTGCTTGTAATCGTGTTGAGTGCTCAGTG
GTTATGACACCAAGCATAGACGCCAAGGGTCTTTATGTGTCCTTTAAAGT
TTATATTATAAGAAGAAAAATAGCTTGTGGTTACCATTTTTGccttgaaa
agaaaaaatagtttttgaatTTAGACTGGCTTCTCTCTTTTGTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010355XLOC_010355Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018479-exon-sc0000300-1491911889:199830..200274TCONS_00018479-exon-sc0000300-1491911889:199830..200274Clytia hemisphaericaexon
TCONS_00018479-exon-sc0000300-1510915933:199830..200274TCONS_00018479-exon-sc0000300-1510915933:199830..200274Clytia hemisphaericaexon
TCONS_00018479-exon-sc0000300-1575043694:199830..200274TCONS_00018479-exon-sc0000300-1575043694:199830..200274Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:199830..200274 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.300659	0.29319	0.680843	0.499574	1.82455	0.640792	0.579817	0.723756	0.633399	0.156913	0.152304	0.400474	0.699856	0.311489	0.341448	0.183213	0.338555	0.462678	0.639214	0.167223	0.145347	0.212686	0.172365	0.313409	0.161402	1.58452	0	0.439978	0.500562	0.509993
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018479 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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