TCONS_00018470 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018470
Unique NameTCONS_00018470
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2337

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018470 ID=TCONS_00018470|Name=TCONS_00018470|organism=Clytia hemisphaerica|type=transcript|length=2337bp
CTTGAGAGTAAAAGATCTGGATACATAATTTGAAATCAGCGAGGTTCAAA
GATTCAGTGATAAACAACGTTTTATTGGCATTTTGTACTTGTGTTCCTTT
ACGGAAAACAGTGCACTGATTTGCCGTGTATACTCAGGTGCCGGTCAGAA
TAGGGGGTCTAAATACCAAAATAAGGTAATAATAGATATTATAAACTGGA
GATAACTGGGGTCTTCACAGACCTAGATCGAAGGCTGATGATAATGATGA
ACGATttcgaaatcagcaaaaaggaCCCCCATTAAAAATAGCTGTGTCGT
AAGAACTGTTTGTAGCAACAATACTTCTTCAGGGAAAACTGTTCGGTTTT
CATTAGAATATCAATTGGAGTGCATTTAATCACACCATGCATAGTAGTGC
TCTTGTACAATCGTCACATACATAGCAACAACTTTTGCTTTCAACACATA
CATAAGGACTTTTGCTCTCATCTCAAAGAATACCACTTTCAGACGTTCGA
ACCAAAGACGTAATGGAAGGcacttttctttcaaatatgtTTTGGATGAT
ATTATGTTTCATATTGATTTTCAATACAGTATCTGGTCGCCGTCAAACAC
CGGAAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGACTTG
ACGGCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATTGAA
GCTGTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTGACG
TCAACTTTATCCAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCGATG
GACTTTGGCAATATTACCGATATCAACATTGATCCTGAAGCGGCTTGGGT
TCCCAATCTTTATGTGCATGGCAATCTAGAAGAGGACAAAGAGTATAATG
GACTCCTCAGCACCCTGCTCACCAAGATCAACCTTCGACACGATGGAGTA
CAAACATGGCTTGCACCCTCCACCCTTCTTCTTAAATGCGCCATCATTGT
CAGCCATTTCCCTTTTGACACTCAGCATTGTCATTTACAATTTGGAAGTT
TTGCTTTTGACTCAAGCAAACTAAACATTAACGTCAAACCTCTGGACCTT
GATCTTTATGAAGACAGTCCAGAATGGGAGCTGCTGGAATCTGGGCACGC
CAAAGAATACGTCACTTACCCTGGCTCCAAGACGCCGTACACCGACGCCC
TGTACGTTCTCAAAATACGACGCAAGGCTCTGGCACCTTTGAAGGAGCTG
GTGTTTCCAAATTTAGCGCTCATCACGTTGACTATGCTTGTGTTTGTTAT
TCCAACGGATGCTGGTGAACGAATCGGATACCTGTTCACCACGTTTCTTG
CCATCGCTTTCTTCATGACCGACACTATCGATACTTTACCAAGAAATTCT
CTCAATGCACCTTTTTGTATGGTCTTTATGGGTGTCAGTACGTTGAGTCT
ATCCCTACTGGCCGTCTGCTTGTGCATCAGTATCTCATGCTATTACGCCA
ACACAAACCTCGTTAAACTCCCTGATAAATGTAAAACGTTTCTGAGAAAG
TCTGGCAAGTTCCTTGGTGTGAACCTGAAACGAGAGTTTGATGGATGGCG
ACACATGTTGAACGAGATTCGAAATTTTGAAGAAGAGAACTTTATCGGAA
GTTGCTCGTCAGGTTCTTTACATGAAGAAGTGAAAAAGTTCGCATTGGCA
TCACATACCGAACATCCGACAGAACGTGCGAAGAGTTCACCAGAACAAAC
ACCTGTTCAAACAAGGAAAGACAATTCGCAACACAAGTGTTCCTTAAGCG
AAGAAGAAATTGACGGAGTCGATCCTCTTTTTGAGAATCCAGAAGATTTA
AGGTCAGTTCATGAAAGGTTGGAGATTTTGTTGTCGACTTTTGAAGAGCA
GGATGATAGCTCTTGGCGAGAAATGGAGTGGTTTCTCTTCTCACAGGTTG
TCGATAAAATCTGCTTCGTCGTTTTCACGTCTTATTTTGTGTTGTCCCTG
GTCTTCGCTGGTATACATATTTATGAGGTGTACTGATGAACTTAGTCCAG
TGGTATCACATCATTAATTTGTATGTAATGAGAGCCGGAAGTGTACCCAT
ATTCCGTTACTTGGACCGAAAGCGAACAAAGAGTGTAgtgtattttattt
tctgaacaATTTTGTGGAATACACTTCTCAATttataattttgtaaaaaa
aatttaattttgaattgTGACAATaatattgtgttttttttctaataaat
ttcattttgtaaaatatatttcataGAAAGTCTCGTTTTTTtcgtaaaaa
tattttgaaatatacgAATAGATGTTTGACATCACTA
Run BLAST on NCBI

transcript from alignment at sc0000300:129824..133623-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018470 ID=TCONS_00018470|Name=TCONS_00018470|organism=Clytia hemisphaerica|type=transcript|length=3800bp|location=Sequence derived from alignment at sc0000300:129824..133623- (Clytia hemisphaerica)
CTTGAGAGTAAAAGATCTGGATACATAATTTGAAATCAGCGAGGTTCAAA
GATTCAGTGATAAACAACGTTTTATTGGCATTTTGTACTTGTGTTCCTTT
ACGGAAAACAGTGCACTGATTTGCCGTGTATACTCAGGTGCCGGTCAGAA
TAGGGGGTCTAAATACCAAAATAAGGTAATAATAGATATTATAAACTGGA
GATAACTGGGGTCTTCACAGACCTAGATCGAAGGCTGATGATAATGATGA
ACGATTTCGAAATCAGCAAAAAGGACCCCCATTAAAAATAGCTGTGTCGT
AAGAACTGTTTGTAGCAACAATACTTCTTCAGGGAAAACTGTTCGGTTTT
CATTAGAATATCAATTGGAGTGCATTTAATCACACCATGCATAGTAGTGC
TCTTGTACAATCGTCACATACATAGCAACAACTTTTGCTTTCAACACATA
CATAAGGACTTTTGCTCTCATCTCAAAGAATACCACTTTCAGACGTTCGA
ACCAAAGACGTAATGGAAGGCACTTTTCTTTCAAATATGTTTTGGATGAT
ATTATGTTTCATATTGATTTTCAATACAGGTAAGAAACTTACTTTTGAAA
CATGCTTAAGTTGACTCTTAAGTCTTACAAAAAAGAATTGTACCATACGC
TTTCCTTGGGACTGGCTGAATGTTTACCTTTTCTGCGCTAAGTTGAAACC
ATTGTTCTTTCTCTCTTCTCAAGCAGTATCTGGTCGCCGTCAAACACCGG
AAGAACGTTTACATTCTCATCTCTTTGGAGATCAACATCACGACTTGACG
GCCTTCCCTCTGGAGAAAGGATCACTTGATTTGAATTTCCGATTGAAGCT
GTTTGGAGCTGACATTGAAACCGACACGGAGACACTTAGTGTTGACGTCA
ACTTTATCCAGGTAGGTTTGGCTTAATTTTTCAGCTAAGTATATTCATTT
GACTATTTCAATCTTCTTCACCACAATTAATCCTTAGACAGGTGACAAGA
GGCGTCGTCACAAACACATTGAATCCATTATTGTGACATACATTGTTTTC
TTTTAGAGCTGGGCAAACAAACGATTGAGTTGGAATCCGATGGACTTTGG
CAATATTACCGATATCAACATTGATCCTGAAGCGGCTTGGGTTCCCAATC
TTTATGTGCATGGCAAGTAAGTGAATATATGGTGTGACTTTCGAAGGGCT
ATGATGTGGCTGTACCACAGTGCAATTTGAAGACAAAATTGAACAGAGAA
AAATATGAAAAACAAACATTTTAAGCAGAGATAAATTTCTATATTACACC
CCTGTGTCACAGACCCGCTGGGGCCCTAGGAAAAATACCCTAGAATTTCA
GCCACACTAAGAAATTGACTTTGATTTCATCCCCATTCGGAATTCGTTGT
TTAGAAATTGCACTCTAAAACCATCCTCACTGGATTTTGGGTGTTATATT
TTTACATTTTTATCTTCCATCGTTTTTTAACTTTTTGAAAATTTTTGAAA
CCTTGAATTTATTAACTCGAGATTATCTTTCCATTAAGGCGTTACTTTAA
ATTTTATTCTTCAAGAGCTACTTATCAGCATGTCCTTTGGAACAGACGTT
AGGAAGAAGCAATATTCATTGATCAACTATCAGTAAATTTTTCACACCTA
ATATTTCAGTCTAGAAGAGGACAAAGAGTATAATGGACTCCTCAGCACCC
TGCTCACCAAGATCAACCTTCGACACGATGGAGTACAAACATGGCTTGCA
CCCTCCACCCTTCTTCTTAAATGCGCCATCATTGTCAGCCATTTCCCTTT
TGACACTCAGCATTGTCATTTACAATTTGGAAGTTTTGCTTTTGACTCAA
GCAAACTAAACATTAACGTCAAACCTCTGGACCTTGATCTTTATGAAGGT
ATTTTTCATGTTTCCATCAATCCCGGTTTAGTGGTCATCTCACGGGAATA
ATAGTACCATTGAAACAAGGTAGCGCTCAAAGAAGATTCTCACTAAATAA
TCATAAAATGTAATAAAATCTTAAATTCAAAATATTCCTTTTCCCAGTGG
TATTTTAACTCCGAAAGTGGACCAGTGAGACAGAAGTGTATCGTAGCCAC
CAGGATAAGATAAAGCCAACACCCAGGAAGCACTCATTTTGTGTTATACA
ATATGTACCGTCGTCGATTAAGGCCTCTATTTCTATTTCTATTTGGTTGA
GTTGCAGGAGGCTTTGAGGCCTATTTTCGCAACTATAGACGCTTTCAATG
AGCGCCCCGTCAGCACATTGGACTGACTACCCAATTCCCCTCACATGGCA
TGGGTTGACCCGGGCGAAGGTTCATTCACTTGGTCAATGACCACTATACC
ACAGCGCCTTTTTTTCTGGAATATGCTTTCTTTGAGTGGGAATCGAACCT
ATCAGTCGCCTGTGCAGTAACCAAGGTCAATGACCACTATACCACAGCGC
CTTTTTTTCTGGAATATGCTTTCTTTGAGTACCCCTGATACCACCAGGAT
TTTAACTGGTTAAATACTCATATGAATGCAGCCTGACGTCAAAAGTCTCA
GTTTCTATTCTCTCTTTTCAAACCAGACAGTCCAGAATGGGAGCTGCTGG
AATCTGGGCACGCCAAAGAATACGTCACTTACCCTGGCTCCAAGACGCCG
TACACCGACGCCCTGTACGTTCTCAAAATACGACGCAAGGCTCTGGCACC
TTTGAAGGAGCTGGTGTTTCCAAATTTAGCGCTCATCACGTTGACTATGC
TTGTGTTTGTTATTCCAACGGATGCTGGTGAACGAATCGGATACCTGTTC
ACCACGTTTCTTGCCATCGCTTTCTTCATGACCGACACTATCGATACTTT
ACCAAGAAATTCTCTCAATGCACCTTTTTGTATGGTCTTTATGGGTGTCA
GTACGTTGAGTCTATCCCTACTGGCCGTCTGCTTGTGCATCAGTATCTCA
TGCTATTACGCCAACACAAACCTCGTTAAACTCCCTGATAAATGTAAAAC
GTTTCTGAGAAAGTCTGGCAAGTTCCTTGGTGTGAACCTGAAACGAGAGT
TTGATGGATGGCGACACATGTTGAACGAGATTCGAAATTTTGAAGAAGAG
AACTTTATCGGAAGTTGCTCGTCAGGTTCTTTACATGAAGAAGTGAAAAA
GTTCGCATTGGCATCACATACCGAACATCCGACAGAACGTGCGAAGAGTT
CACCAGAACAAACACCTGTTCAAACAAGGAAAGACAATTCGCAACACAAG
TGTTCCTTAAGCGAAGAAGAAATTGACGGAGTCGATCCTCTTTTTGAGAA
TCCAGAAGATTTAAGGTCAGTTCATGAAAGGTTGGAGATTTTGTTGTCGA
CTTTTGAAGAGCAGGATGATAGCTCTTGGCGAGAAATGGAGTGGTTTCTC
TTCTCACAGGTTGTCGATAAAATCTGCTTCGTCGTTTTCACGTCTTATTT
TGTGTTGTCCCTGGTCTTCGCTGGTATACATATTTATGAGGTGTACTGAT
GAACTTAGTCCAGTGGTATCACATCATTAATTTGTATGTAATGAGAGCCG
GAAGTGTACCCATATTCCGTTACTTGGACCGAAAGCGAACAAAGAGTGTA
GTGTATTTTATTTTCTGAACAATTTTGTGGAATACACTTCTCAATTTATA
ATTTTGTAAAAAAAATTTAATTTTGAATTGTGACAATAATATTGTGTTTT
TTTTCTAATAAATTTCATTTTGTAAAATATATTTCATAGAAAGTCTCGTT
TTTTTCGTAAAAATATTTTGAAATATACGAATAGATGTTTGACATCACTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010347XLOC_010347Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018470-exon-sc0000300-1575043694:133045..133623TCONS_00018470-exon-sc0000300-1575043694:133045..133623Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1575043694:132713..132897TCONS_00018470-exon-sc0000300-1575043694:132713..132897Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1575043694:132458..132567TCONS_00018470-exon-sc0000300-1575043694:132458..132567Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1575043694:131726..131964TCONS_00018470-exon-sc0000300-1575043694:131726..131964Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1575043694:129824..131047TCONS_00018470-exon-sc0000300-1575043694:129824..131047Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1510915933:133045..133623TCONS_00018470-exon-sc0000300-1510915933:133045..133623Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1510915933:132713..132897TCONS_00018470-exon-sc0000300-1510915933:132713..132897Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1510915933:132458..132567TCONS_00018470-exon-sc0000300-1510915933:132458..132567Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1510915933:131726..131964TCONS_00018470-exon-sc0000300-1510915933:131726..131964Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1510915933:129824..131047TCONS_00018470-exon-sc0000300-1510915933:129824..131047Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1491911889:133045..133623TCONS_00018470-exon-sc0000300-1491911889:133045..133623Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1491911889:132713..132897TCONS_00018470-exon-sc0000300-1491911889:132713..132897Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1491911889:132458..132567TCONS_00018470-exon-sc0000300-1491911889:132458..132567Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1491911889:131726..131964TCONS_00018470-exon-sc0000300-1491911889:131726..131964Clytia hemisphaericaexon
TCONS_00018470-exon-sc0000300-1491911889:129824..131047TCONS_00018470-exon-sc0000300-1491911889:129824..131047Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:129824..133623 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
21.0052	17.5582	12.4186	11.1239	8.26442	5.02833	8.40011	0.054831	3.09501	5.93917	7.07726	6.19387	2.87671	6.64588	4.74461	3.78619	14.705	12.5711	8.57501	9.80267	15.2137	15.7787	10.9692	5.50406	1.75545	3.17906	9.96715	5.96647	3.06971	5.83981
Blast
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BLAST of TCONS_00018470 vs. Swiss-Prot (Human)
Match: ACHA6 (Neuronal acetylcholine receptor subunit alpha-6 OS=Homo sapiens GN=CHRNA6 PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 2.414e-35
Identity = 116/477 (24.32%), Postives = 221/477 (46.33%), Query Frame = 3 
Query:  603 EERLHSHLFGDQHHDLTAFPLEKGS--LDLNFRLKLFG-ADIETDTETLSVDVNFIQSWANKRLSWNPMDFGNITDINIDPEAAWVPNLYVHGNLEEDKEYNGLLSTLLTKINLRHDGVQTWLAPSTLLLKCAIIVSHFPFDTQHCHLQFGSFAFDSSKLNINV--KPLDLDLYEDSPEWELLESGHAKEYVTYPGSKTPYTDALYVLKIRRKALAPLKELVFPNLALITLTMLVFVIPTDAGERIGYLFTTFLAIAFFMTDTIDTLPRNSLNAPFCMVFMGVSTLSLSLLAVCLCISISCYYANTNLVKLPDKCKT-FLRKSGKFLGVNLKREFDGWRHMLXXXXXXXXXXXXGSCSSGSLHEEVKKFALASHTEHPTERAKSSPE--QTPVQTRKDNSQHKCSLSEEEIDGVDPLFENPEDLRSVHERLEILLSTFEEQDDSSWREMEWFLFSQVVDKICFVVFTSYFVLSLVFA 2009
            EERL   LF   H++    P+E  S  + ++F + +   A+++   + +  ++     W + +L W+PM++  I  + +  +  W P++ ++ N   D +  G      TK  L+++G+ TW  P+     C + ++ FPFD Q+C L+FGS+ +D +++++ +    +D++ + ++ EWE++++   K  + Y   +  YTD  Y   IRR  +     L+ P L +  LT+LVF +P+D GE++    +  L++  F+    +T+P  SL  P    ++  + + ++L  V     ++ +Y       +P   KT FL+   + L   ++   D  R   ++                S H E +      H     E A S       P+Q   +NS+H   + E+ I+ V  + EN   ++S +E  E+       +DD       W   + VVD+    VF   F++  VF 
Sbjct:   34 EERLFHKLFS--HYNQFIRPVENVSDPVTVHFEVAITQLANVDEVNQIMETNLWLRHIWNDYKLRWDPMEYDGIETLRVPADKIWKPDIVLYNNAVGDFQVEGK-----TKALLKYNGMITWTPPAIFKSSCPMDITFFPFDHQNCSLKFGSWTYDKAEIDLLIIGSKVDMNDFWENSEWEIIDASGYKHDIKYNCCEEIYTDITYSFYIRRLPMFYTINLIIPCLFISFLTVLVFYLPSDCGEKVTLCISVLLSLTVFLLVITETIPSTSLVVPLVGEYLLFTMIFVTLSIVVTVFVLNIHYRTPTTHTMPRWVKTVFLKLLPQVLL--MRWPLDKTRGTGSDAVPRGLARRPAKGKLAS-HGEPRHLKECFHCHKSNELATSKRRLSHQPLQWVVENSEHSPEV-EDVINSVQFIAEN---MKSHNETKEV-------EDD-------WKYVAMVVDR----VFLWVFIIVCVFG 478
The following BLAST results are available for this feature:
BLAST of TCONS_00018470 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACHA62.414e-3524.32Neuronal acetylcholine receptor subunit alpha-6 OS... [more]
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