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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018467 ID=TCONS_00018467|Name=TCONS_00018467|organism=Clytia hemisphaerica|type=transcript|length=6097bpRun BLAST on NCBI protein sequence of TCONS_00018467-protein >TCONS_00018467-protein ID=TCONS_00018467-protein|Name=TCONS_00018467-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1769bp MDVIRSWFEVPAIAHFFHVFKNSFGLIEFDIEDFEDALFLDSAENCSSFLRun BLAST on NCBI transcript from alignment at sc0000300:41545..56438- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018467 ID=TCONS_00018467|Name=TCONS_00018467|organism=Clytia hemisphaerica|type=transcript|length=14894bp|location=Sequence derived from alignment at sc0000300:41545..56438- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000300:41545..56438- >TCONS_00018467 ID=TCONS_00018467|Name=TCONS_00018467|organism=Clytia hemisphaerica|type=CDS|length=84960bp|location=Sequence derived from alignment at sc0000300:41545..56438- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00018467 vs. Swiss-Prot (Human)
Match: CECR2 (Cat eye syndrome critical region protein 2 OS=Homo sapiens GN=CECR2 PE=1 SV=2) HSP 1 Score: 154.066 bits (388), Expect = 3.624e-37 Identity = 69/161 (42.86%), Postives = 110/161 (68.32%), Query Frame = 1
Query: 274 IRSWFEVPAIAHFFHVFKNSFGLIEFDIEDFEDALFLDSAENCSSFLPDLVVQLLRGLYKTKDGLQITIENYSHYLQDLLEFRYA---GRHNPVKDGDFKAITTREKVEVLYDMCNWRLEPEDVVELTKDLEAEEMRVMPVGFDEEGHQYWYFYGTRLYQE 747
+RSW+EVPAIAHF +F+ +F L +F+IE+ E AL D E F+ DL+ LL+G Y+ +D IT + + YL+D++ +R+ G+ NP+++ F+ + R +VE+L+ +C++RL+ +DV +L K L+A+ +RV P+G D G YWYFYGTR+Y+E
Sbjct: 14 LRSWWEVPAIAHFCSLFRTAFRLPDFEIEELEAALHRDDVE----FISDLIACLLQGCYQRRD---ITPQTFHSYLEDIINYRWELEEGKPNPLREASFQDLPLRTRVEILHRLCDYRLDADDVFDLLKGLDADSLRVEPLGEDNSGALYWYFYGTRMYKE 167 HSP 2 Score: 123.635 bits (309), Expect = 6.533e-28 Identity = 57/120 (47.50%), Postives = 79/120 (65.83%), Query Frame = 1
Query: 1543 EEDDQFIAMEKVLEVMKDHDDSWPFLEPVDAAEAPNYYEFIKNPMDLSKIAEKIENKTYKDESEFANDVYLMLDNCEMYNGTLSPFTKLAGKIKKVFEKQMKKEFPPE-MDSNDEMYVEE 1899
E DD F AM KVL+V+K H DSWPFLEPVD + APNYY+ IK PMD+S + +K+ Y + EF ND+ M NC YNG S +TK++ +++ F + M K FP E D+++E ++ E
Sbjct: 435 ELDDDFTAMYKVLDVVKAHKDSWPFLEPVDESYAPNYYQIIKAPMDISSMEKKLNGGLYCTKEEFVNDMKTMFRNCRKYNGESSEYTKMSDNLERCFHRAMMKHFPGEDGDTDEEFWIRE 554 The following BLAST results are available for this feature:
BLAST of TCONS_00018467 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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