TCONS_00018432 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018432
Unique NameTCONS_00018432
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length199

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018432 ID=TCONS_00018432|Name=TCONS_00018432|organism=Clytia hemisphaerica|type=transcript|length=199bp
NTCTCTTACCAACCAAAAATCACAAGCTTTCGTTAATAATCTGCAATCTA
AAATCAAGGGCTTGAACGCAAACGCTGACgaagataatgaaattttagAC
AAATTGAGGAACTCGTTGAAGAATGCAATCGATAAAGAGCGAGCTTCAAG
ACAAGATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatcaaaa
Run BLAST on NCBI

transcript from alignment at sc0000300:284771..285469+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018432 ID=TCONS_00018432|Name=TCONS_00018432|organism=Clytia hemisphaerica|type=transcript|length=699bp|location=Sequence derived from alignment at sc0000300:284771..285469+ (Clytia hemisphaerica)
NTCTCTTACCAACCAAAAATCACAAGCTTTCGTTAATAATCTGCAATCTA
AAATCAAGGTAAGTTTTTCCTTTCATCGTTGATTTCTATATTGAAAGCTT
TCCACCAGCGATATTTAGTACACGAGCTAGGCTGCTAAAATCCTCTAGTA
TGCTTTGTTATCAGAAAACGCTCAGATAAACACGCTACACGCCGTCTGAA
CCTGTATCAAACCGATACACGCAGTCTAGTCATCAGCTCAATGTGCTCAT
TGAATCTTTTCGGAATCGGTTTTGTACTTGTGCGATTCTGTATGCAATTT
TGTATTCTGACTGCTTTTGAATTGGTAAGTCATACATCAGATCCTCCTTC
CATGTTATACTTTACATATTTTTTCTATAGGGCTTGAACGCAAACGCTGA
CgaagataatgaaattttagACAAATTGAGGAACTCGTTGAAGAATGCAA
TCGATAAAGAGCGAGTAAGTTTATGAGCATTTTGTGgtcattctttttca
ttttaattctCTTGTGTTTAATTGTAGAGTTCTACTTCTTTTCACGAATA
AAGTTAGTAAGCattcgttaattttttcagCAAGATTGGAGAGACTTAAG
AGACTGCTTTGATCTTTGATCTTTAATTTATTTCTCTCACAGGCTTCAAG
ACAAGATTTGGTTGAAATGCTGAATGAAAAGGAggaagaaatatcaaaa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010338XLOC_010338Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018432-exon-sc0000300-1491911889:284771..284828TCONS_00018432-exon-sc0000300-1491911889:284771..284828Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1510915933:284771..284828TCONS_00018432-exon-sc0000300-1510915933:284771..284828Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1575043694:284771..284828TCONS_00018432-exon-sc0000300-1575043694:284771..284828Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1491911889:285151..285234TCONS_00018432-exon-sc0000300-1491911889:285151..285234Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1510915933:285151..285234TCONS_00018432-exon-sc0000300-1510915933:285151..285234Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1575043694:285151..285234TCONS_00018432-exon-sc0000300-1575043694:285151..285234Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1491911889:285413..285469TCONS_00018432-exon-sc0000300-1491911889:285413..285469Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1510915933:285413..285469TCONS_00018432-exon-sc0000300-1510915933:285413..285469Clytia hemisphaericaexon
TCONS_00018432-exon-sc0000300-1575043694:285413..285469TCONS_00018432-exon-sc0000300-1575043694:285413..285469Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000300supercontigsc0000300:284771..285469 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.37901	0	0	0	0	0	0	0	0	0	13.6935	0	1.12364	0	0.959356	1.02954	0	1.29997	1.79598	0	1.63351	0	0	0	0	0	0	0	1.87522	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018432 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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