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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018407 ID=TCONS_00018407|Name=TCONS_00018407|organism=Clytia hemisphaerica|type=transcript|length=1455bp
GCTCCTTACAGTTCAAATAAATTGAACATTTCATTATTAGACAAGAAAAT
GATGGATTATATTAAATTTAGATGAAGAGATTTGCtcttgaaagttttaa
aagaaatttacaACACAACTtcactcaaaaaatatttacaaactaAAATC
TAATAAATGTTCAATCAGTAATCATTTTAAGAAATGACCAGCAGTTAAGT
AAGTTGGCGTGGAATAACGATCCCTTCGTGATGAGAGATAAACTATCGAA
GCCATTCAAAGTTAATAGCgtggaaagaaaataaagaactttttgataga
ctCGATTGGATGAATAAGTAGCTCATAAAACAAagagtttttgtttattc
attATCGGGGTTTGGATCACTGACTTCCTGTTGAATGAACCCTTCCACGT
CCTGCGTGATGTTCGTGTCTGTTTCATCTTGTGCTTGCACGCTAACGCTG
ATGATCTGATGCGATTGTATTTCCATAGAACCTGTCAATTGAGCTCCCTC
TCCTCCAACGACTAACCCTTCCTCACCTGATGCTAAGACCTGTTCGTTAG
CGACCGCCTGACTAACGCATTCCATGACGTAGGAAAGCGTGGCGTTCGAT
TGAGGATCGTTGATGATTTCTTGCAGGCTAGCAGCTTCTTGTTGGTTTGC
TTGAATGACTTGCAGTGCGACGAGAGCAGTTTCTGCTTGGACGGACGTTT
CATCGTTGGTGTTGACGACCTCCATCTCAGTTTGCTCGACAAACTTTAAC
TCATTCTCTTCTTCCTCCGTGTTGATGGTCACCGTCTCACCTTCGTGTTG
CATAGCAACCATGGGTTCATCGGTTTCCTCTTCATGCGCATGCGCTACAG
CGGATTCCGTTTGAACaacttcttctccttctttgatgacgtcatcatca
tcCTCATCCATTACGACATCATCATCTAATTCGTCATCAGAAAGATTTTT
CAACTGTCGCATCATTTCTTCTTTGGCTTTCAAAGTAGCTTTTCGCTTTT
CTGCACCTTTGTTCGTTGGAATGGCACATTTTCGCAAGTGAGCTTGCAGA
ATACTGCGCGCGCTAAAAGATTGTTCACAGCGCGTGCATTCGAattcttg
tttgttttgatgagtCAGCATGTGGCGTTCGAGACGTTTCGCGCTGTTGA
AGGAGCGATCGCATTGTTCACAGTCGATGGCGTCAGGGGCGGCCATTTGC
ACACGCCCCGCCTTGTGATCCTGGATGTGTTTCTCAAAGCTTGATATCAT
TCGGAATTCACGTTTTCGACACAACTTGCAACGTAGTTTGACTTCTTGCG
TTTTGGGATCAACGTATTTAATGGCTTGATCGCTGATCTGGTCGAGAGCT
TCATCAGAGAGAGAATCTACTCGTTTTTTCTTGACTCGGGAGTGTCGGTC
TTCGTCCGTTTCATTAGCATGAGTCTTCATGTGTTCGTCCAGTCGACCCT
GAATG Run BLAST on NCBI protein sequence of TCONS_00018407-protein >TCONS_00018407-protein ID=TCONS_00018407-protein|Name=TCONS_00018407-protein|organism=Clytia hemisphaerica|type=polypeptide|length=369bp
IQGRLDEHMKTHANETDEDRHSRVKKKRVDSLSDEALDQISDQAIKYVDP
KTQEVKLRCKLCRKREFRMISSFEKHIQDHKAGRVQMAAPDAIDCEQCDR
SFNSAKRLERHMLTHQNKQEFECTRCEQSFSARSILQAHLRKCAIPTNKG
AEKRKATLKAKEEMMRQLKNLSDDELDDDVVMDEDDDDVIKEGEEVVQTE
SAVAHAHEEETDEPMVAMQHEGETVTINTEEEENELKFVEQTEMEVVNTN
DETSVQAETALVALQVIQANQQEAASLQEIINDPQSNATLSYVMECVSQA
VANEQVLASGEEGLVVGGEGAQLTGSMEIQSHQIISVSVQAQDETDTNIT
QDVEGFIQQEVSDPNPDNE Run BLAST on NCBI transcript from alignment at sc0000297:172979..174433 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018407 ID=TCONS_00018407|Name=TCONS_00018407|organism=Clytia hemisphaerica|type=transcript|length=1455bp|location=Sequence derived from alignment at sc0000297:172979..174433 (Clytia hemisphaerica)
CATTCAGGGTCGACTGGACGAACACATGAAGACTCATGCTAATGAAACGG
ACGAAGACCGACACTCCCGAGTCAAGAAAAAACGAGTAGATTCTCTCTCT
GATGAAGCTCTCGACCAGATCAGCGATCAAGCCATTAAATACGTTGATCC
CAAAACGCAAGAAGTCAAACTACGTTGCAAGTTGTGTCGAAAACGTGAAT
TCCGAATGATATCAAGCTTTGAGAAACACATCCAGGATCACAAGGCGGGG
CGTGTGCAAATGGCCGCCCCTGACGCCATCGACTGTGAACAATGCGATCG
CTCCTTCAACAGCGCGAAACGTCTCGAACGCCACATGCTGactcatcaaa
acaaacaagaatTCGAATGCACGCGCTGTGAACAATCTTTTAGCGCGCGC
AGTATTCTGCAAGCTCACTTGCGAAAATGTGCCATTCCAACGAACAAAGG
TGCAGAAAAGCGAAAAGCTACTTTGAAAGCCAAAGAAGAAATGATGCGAC
AGTTGAAAAATCTTTCTGATGACGAATTAGATGATGATGTCGTAATGGAT
GAGgatgatgatgacgtcatcaaagaaggagaagaagttGTTCAAACGGA
ATCCGCTGTAGCGCATGCGCATGAAGAGGAAACCGATGAACCCATGGTTG
CTATGCAACACGAAGGTGAGACGGTGACCATCAACACGGAGGAAGAAGAG
AATGAGTTAAAGTTTGTCGAGCAAACTGAGATGGAGGTCGTCAACACCAA
CGATGAAACGTCCGTCCAAGCAGAAACTGCTCTCGTCGCACTGCAAGTCA
TTCAAGCAAACCAACAAGAAGCTGCTAGCCTGCAAGAAATCATCAACGAT
CCTCAATCGAACGCCACGCTTTCCTACGTCATGGAATGCGTTAGTCAGGC
GGTCGCTAACGAACAGGTCTTAGCATCAGGTGAGGAAGGGTTAGTCGTTG
GAGGAGAGGGAGCTCAATTGACAGGTTCTATGGAAATACAATCGCATCAG
ATCATCAGCGTTAGCGTGCAAGCACAAGATGAAACAGACACGAACATCAC
GCAGGACGTGGAAGGGTTCATTCAACAGGAAGTCAGTGATCCAAACCCCG
ATaatgaataaacaaaaactctTTGTTTTATGAGCTACTTATTCATCCAA
TCGagtctatcaaaaagttctttattttctttccacGCTATTAACTTTGA
ATGGCTTCGATAGTTTATCTCTCATCACGAAGGGATCGTTATTCCACGCC
AACTTACTTAACTGCTGGTCATTTCTTAAAATGATTACTGATTGAACATT
TATTAGATTTtagtttgtaaatattttttgagtgaAGTTGTGTtgtaaat
ttcttttaaaactttcaagaGCAAATCTCTTCATCTAAATTTAATATAAT
CCATCATTTTCTTGTCTAATAATGAAATGTTCAATTTATTTGAACTGTAA
GGAGC Coding sequence (CDS) from alignment at sc0000297:172979..174433 >TCONS_00018407 ID=TCONS_00018407|Name=TCONS_00018407|organism=Clytia hemisphaerica|type=CDS|length=1110bp|location=Sequence derived from alignment at sc0000297:172979..174433 (Clytia hemisphaerica)
ATTCAGGGTCGACTGGACGAACACATGAAGACTCATGCTAATGAAACGGA
CGAAGACCGACACTCCCGAGTCAAGAAAAAACGAGTAGATTCTCTCTCTG
ATGAAGCTCTCGACCAGATCAGCGATCAAGCCATTAAATACGTTGATCCC
AAAACGCAAGAAGTCAAACTACGTTGCAAGTTGTGTCGAAAACGTGAATT
CCGAATGATATCAAGCTTTGAGAAACACATCCAGGATCACAAGGCGGGGC
GTGTGCAAATGGCCGCCCCTGACGCCATCGACTGTGAACAATGCGATCGC
TCCTTCAACAGCGCGAAACGTCTCGAACGCCACATGCTGactcatcaaaa
caaacaagaatTCGAATGCACGCGCTGTGAACAATCTTTTAGCGCGCGCA
GTATTCTGCAAGCTCACTTGCGAAAATGTGCCATTCCAACGAACAAAGGT
GCAGAAAAGCGAAAAGCTACTTTGAAAGCCAAAGAAGAAATGATGCGACA
GTTGAAAAATCTTTCTGATGACGAATTAGATGATGATGTCGTAATGGATG
AGgatgatgatgacgtcatcaaagaaggagaagaagttGTTCAAACGGAA
TCCGCTGTAGCGCATGCGCATGAAGAGGAAACCGATGAACCCATGGTTGC
TATGCAACACGAAGGTGAGACGGTGACCATCAACACGGAGGAAGAAGAGA
ATGAGTTAAAGTTTGTCGAGCAAACTGAGATGGAGGTCGTCAACACCAAC
GATGAAACGTCCGTCCAAGCAGAAACTGCTCTCGTCGCACTGCAAGTCAT
TCAAGCAAACCAACAAGAAGCTGCTAGCCTGCAAGAAATCATCAACGATC
CTCAATCGAACGCCACGCTTTCCTACGTCATGGAATGCGTTAGTCAGGCG
GTCGCTAACGAACAGGTCTTAGCATCAGGTGAGGAAGGGTTAGTCGTTGG
AGGAGAGGGAGCTCAATTGACAGGTTCTATGGAAATACAATCGCATCAGA
TCATCAGCGTTAGCGTGCAAGCACAAGATGAAACAGACACGAACATCACG
CAGGACGTGGAAGGGTTCATTCAACAGGAAGTCAGTGATCCAAACCCCGA
Taatgaataa
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018407-exon-sc0000297-1491911889:172979..174433 | TCONS_00018407-exon-sc0000297-1491911889:172979..174433 | Clytia hemisphaerica | exon |
| TCONS_00018407-exon-sc0000297-1510915933:172979..174433 | TCONS_00018407-exon-sc0000297-1510915933:172979..174433 | Clytia hemisphaerica | exon |
| TCONS_00018407-exon-sc0000297-1575043694:172979..174433 | TCONS_00018407-exon-sc0000297-1575043694:172979..174433 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:172979..174433 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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