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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018388 ID=TCONS_00018388|Name=TCONS_00018388|organism=Clytia hemisphaerica|type=transcript|length=2553bpRun BLAST on NCBI protein sequence of TCONS_00018388-protein >TCONS_00018388-protein ID=TCONS_00018388-protein|Name=TCONS_00018388-protein|organism=Clytia hemisphaerica|type=polypeptide|length=795bp MAASDWEEIKRLAADFQRAQLSSTAHKLSERNCIEIVNKLISLGLLDILYRun BLAST on NCBI transcript from alignment at sc0000297:256368..284394- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018388 ID=TCONS_00018388|Name=TCONS_00018388|organism=Clytia hemisphaerica|type=transcript|length=28027bp|location=Sequence derived from alignment at sc0000297:256368..284394- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000297:256368..284394- >TCONS_00018388 ID=TCONS_00018388|Name=TCONS_00018388|organism=Clytia hemisphaerica|type=CDS|length=40596bp|location=Sequence derived from alignment at sc0000297:256368..284394- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00018388 vs. Swiss-Prot (Human)
Match: UFL1 (E3 UFM1-protein ligase 1 OS=Homo sapiens GN=UFL1 PE=1 SV=2) HSP 1 Score: 643.269 bits (1658), Expect = 0.000e+0 Identity = 345/755 (45.70%), Postives = 512/755 (67.81%), Query Frame = 3
Query: 63 ASDWEEIKRLAADFQRAQLSSTAHKLSERNCIEIVNKLISLGLLDILYTTDGKEYLTPQELEKEIRDEVIVHGGRINLVDLQQILNVDLSHIESKVNEFVRSDRSFSLVQGELIDRDYLDRTAEEINESLQENGQTVIADVAKTFNLPSEFILSVIEARLGTIIHGSLDPMNKDVLFTEAFIARNIARIRGIFSAITRPTSVMQLLVQYNLPDKLFFNVLETLVKSNRLCG-ALQGRQEKAIFIPEIYSKAQTSYIDSFFKENGYIEYHTLSKIGIGDGQKYLKKRFSNRKESCMFLSTCCLSHHLIDRXDAEIEEILRNETWGELKWLLPPPLSDEDINQVLQHCLKGPSR-SNARIFCLHTVVSNQYLTKCKNHFNDLMTSKAGRDIKTSPA-LFADLTKKEKSELTDTQGDGKQQKKDERHXXXXXXXXXXXXXXXXXRESNTKKTKNKYXXXXXXXXXXXXXNFNTGKKKTSEIPFLTVDQISNELAKREGSHNNSDNEEFHMEIANYLHRPLTKEYQEVAKSIFLTSSGTSS-VLKNKSHKDYQEKVNGLWSNLKLFEKGLKQFEDENQVALSKHLLKTIATDLTNTIFELVANQNLMSLAENETFTTDSRLKLLTKLPDEWKSPLTKLNTSLGSKSTDDFFTQAELITAPEYCDIMLKKTDKKKERQMLFNHRAALADQLERESEPAMALHLASIILFQYHTNTLLHAPGKFVPQIIMFLQNSISEEDFILLTEYHALVVQQLKQKASK 2315
A WEEI+RLAADFQRAQ + +LSERNCIEIVNKLI+ L++++T DGKEY+TP ++ KE+RDE+ V GGR+N+VDLQQ++NVDL HIE+++ + ++S++ LV G+LID +YLDR AEE+N+ LQE+GQ I+++ KT++LP F+ + RLG II G +D N+ V+FTEAF+AR+ ARIRG+FSAITRPT+V L+ +Y ++L ++VLE LV S RL G + GRQ+KA+F+P+IYS+ Q++++DSFF++NGY+E+ LS++GI D Y+KKR+ + +FL C+ L+D+ +A +EE + + TW ++ LLP LS ED +LQ ++ S+ ++ +F VVS +++ C F +LM KA +++K +P L + K+ S L K +K + R K G +GG G RE KK K K R D+DD +++ +TGKKK EI F+ D+I + L K H EEF E+A YL +PL K Y EV +S+F++S+ ++S + ++ KD QE+V+ L++N++LFEKG+K F D+ Q AL+KHLLK++ TD+TN IF +A+ +M++ + T++ R K+L+KL +E K LTKL+ SL KS +DF + L +A E CDIM+K+ DKK+ERQ+LF HR ALA+QL+ +PA+ LHL S++LFQ+ T+++LHAPG+ VPQII FL + I E+ LL +Y LVV+QL ++ K
Sbjct: 2 ADAWEEIRRLAADFQRAQFAEATQRLSERNCIEIVNKLIAQKQLEVVHTLDGKEYITPAQISKEMRDELHVRGGRVNIVDLQQVINVDLIHIENRIGDIIKSEKHVQLVLGQLIDENYLDRLAEEVNDKLQESGQVTISELCKTYDLPGNFLTQALTQRLGRIISGHIDLDNRGVIFTEAFVARHKARIRGLFSAITRPTAVNSLISKYGFQEQLLYSVLEELVNSGRLRGTVVGGRQDKAVFVPDIYSRTQSTWVDSFFRQNGYLEFDALSRLGIPDAVSYIKKRYKTTQ--LLFLKAACVGQGLVDQVEASVEEAISSGTWVDIAPLLPTSLSVEDAAILLQQVMRAFSKQASTVVFSDTVVVSEKFINDCTELFRELMHQKAEKEMKNNPVHLITEEDLKQISTLESVSTSKKDKKDERRRKATEGSGSMRGGGGGNAREYKIKKVKKKGRKDDDSDDESQSS--HTGKKK-PEISFMFQDEIEDFLRK----HIQDAPEEFISELAEYLIKPLNKTYLEVVRSVFMSSTTSASGTGRKRTIKDLQEEVSNLYNNIRLFEKGMKFFADDTQAALTKHLLKSVCTDITNLIFNFLASDLMMAVDDPAAITSEIRKKILSKLSEETKVALTKLHNSLNEKSIEDFISC--LDSAAEACDIMVKRGDKKRERQILFQHRQALAEQLKVTEDPALILHLTSVLLFQFSTHSMLHAPGRCVPQIIAFLNSKIPEDQHALLVKYQGLVVKQLVSQSKK 745 The following BLAST results are available for this feature:
BLAST of TCONS_00018388 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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