TCONS_00018380 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018380
Unique NameTCONS_00018380
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length746

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018380 ID=TCONS_00018380|Name=TCONS_00018380|organism=Clytia hemisphaerica|type=transcript|length=746bp
TGCATCAAAAACTCTTGAAAGAAGTAATCTTTATTGATAGCAAAATTAAA
TGTACTTTTCATTTTACACACAATTGAAAGTTTGACTTTGGAAAGAGAAA
GAGCTAAGCTTTCTGTGGAATACATTTGATATCACTTCATCTTGAAATGG
CTCCCATCAaactggtctgtattttatctTCTATTCGTGATGGTCGTATG
GGCGATCGTATGAAGAAACTTGTTGAAAGTCAATTCAATGAAGTATTGGG
CTCTAAAGGACATACACTTGAAGTTATTGACCCAGCCGATTATGATTTAC
CAGTCCTGAAGTTACCTCTACATTTCCATCGCGATCCATCCCAAGCTCCT
GAGAACCTTAAGCAACTAAATGAAATTGTAATGAGCGCAGACGGTTACAT
TATCGTGACTGCAGAATACAATCGAAGTCTTCCACCAGCATTGACAAACC
TTATGGACCATCTACCGCCAACCAGTTTTGAATTCAAATCAAGTGGTGTC
GTATCTTACTCCATGAGCAATCAGGGTGGTGTTATGGCGGTCGCCTCTGC
ACGCCCTTTCCTTTCAGAATTCGGATGCCTCCCAGTCAAACATTTCGTAG
CCGTCGATACTGTTCACAAGGAAGTGAAGGAAGATGGAACAACAGAAAAC
ACTCACATTTGCAGTAGTTTAAAGAAATTATTCAACGAAGTCGAATGGTG
GGCTAGAGCTGCCAAAGCACTTCGTGAATCGGAAGGAAAACCaaac
Run BLAST on NCBI

protein sequence of TCONS_00018380-protein

>TCONS_00018380-protein ID=TCONS_00018380-protein|Name=TCONS_00018380-protein|organism=Clytia hemisphaerica|type=polypeptide|length=200bp
MAPIKLVCILSSIRDGRMGDRMKKLVESQFNEVLGSKGHTLEVIDPADYD
LPVLKLPLHFHRDPSQAPENLKQLNEIVMSADGYIIVTAEYNRSLPPALT
NLMDHLPPTSFEFKSSGVVSYSMSNQGGVMAVASARPFLSEFGCLPVKHF
VAVDTVHKEVKEDGTTENTHICSSLKKLFNEVEWWARAAKALRESEGKPN
Run BLAST on NCBI

transcript from alignment at sc0000297:311878..314150+

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018380 ID=TCONS_00018380|Name=TCONS_00018380|organism=Clytia hemisphaerica|type=transcript|length=2273bp|location=Sequence derived from alignment at sc0000297:311878..314150+ (Clytia hemisphaerica)
TGCATCAAAAACTCTTGAAAGAAGTAATCTTTATTGATAGCAAAATTAAA
TGTACTTTTCATTTTACACACAATTGAAAGGTAATCTGATTATAAATGTA
ATGGTAAATGGTAGCAGCGTTTATTATACCACATTTGTGGTTTATTACGA
CACGAAATAAAGTTATGTAAAGTGCTGCAGAATGTTTTCGTACTAGAAAG
TTCTTCATATCACGTGTAacgtttattaaattattaattGCTGTTGTATT
TGCTGATAAAAGCAGATTTTGCACGTGAATAAAGAAGCTTTGAATTCAAC
TTTTTGCATTTGAATGGCATCTCTATAAGAGGGAGATAGTTCAAATAAAA
AGCTTTATTCATACATTCTATTTATTCAAACAGTTTGAAAGATTATGATA
TATTCTAATGTTCAACAACAGGAGATTTTATTACGCTTTTCTTTACTCTT
ATACATTCTTGTTTTAGTTTGACTTTGGAAAGAGAAAGAGCTAAGCTTTC
TGTGGAATACATTTGATATCACTTCATCTTGAAATGGCTCCCATCAaact
ggtctgtattttatctTCTATTCGTGATGGTCGTATGGGCGATCGTATGA
AGAAACTTGTTGAAAGTCAATTCAATGAAGTATTGGGCTCTAAAGGACAT
ACACTTGAAGTTATTGGTAAGTTGCTGCGTGCGTCTTTCCGCGTATCTTA
TGGAAGTTAGCATAGGAAGCAAATCTCAAACAAGCAGGAAATTCTTGTTA
AAACACTTCTGCCCCATACAGAATATAAACGCAATCCTAACTTTTGAGCT
TTTTCCTTGAATACAGTAGTTTTTACATCACGTTTTAACACTGGAACACT
GTAGTTTACAGTGGTCCATGCTTTTGAATTAacttaatactttcttttac
atTTCTTTACAGACCCAGCCGATTATGATTTACCAGTCCTGAAGTTACCT
CTACATTTCCATCGCGATCCATCCCAAGCTCCTGAGAACCTTAAGCAACT
AAATGAAATTGTAATGAGCGCAGACGGTTACATTATCGTGACTGCAGAAT
ACAATCGAAGTCTTCCACCAGCATTGACAAACCTTATGGACCATCTACCG
CCAACCAGGTAACCTATTCTTCTACCTATCTGTCCATTTTTTTCTGTCCG
TCTTTAAATGATGAAGAAGAACGTTACTTTGATTTTAGCAAACTTTTGAA
AACTCCTTAGCTCCTCGTGCCATCCATTATTCTCATAGGATTCGTCGTTT
TCAAAACTATAGCTACTTAGTCGCCGAGGCTCAAAAGAACCCCTGCATTA
ACTAATACAGctaattctcttttttcaataTGTACCGGAATATTGGTAGG
AAGAAGTAAGCCTAAAACCGGAATACCGATCTGTCGGAAGCATCCCCTCC
CCATCATAAACTAACTGGTCAAACACATGCCTTTGTATTGTATCATTTTC
TATTTAGTTTTGAATTCAAATCAAGTGGTGTCGTATCTTACTCCATGAGC
AATCAGGGTGGTGTTATGGCGGTCGCCTCTGCACGCCCTTTCCTTTCAGA
ATTCGGATGCCTCCCAGTCAAACATTTCGTAGCCGTCGATACTGTAAGTA
GCTCGTTTTGACAGTTATCGCTCCAATCGCTCCAATATCTTAAATTCCAA
AATAAGGGTATTTGGTCCGGGGTTGACCTACTCCTTGTGCTTTATATAAA
AGAAAGTTCAACTCGCGGACTTTCTACGTAGATTTGCCACTGATGGTTGG
TTTTTGATTATTGAATTATACACTGAACTAACCATAGCTTGGATAAAAAA
TAAGTTTAGGAAGCCTATTGTTGCTTTCTAATGTTTCTAGCTTTAACTTA
GGTTGAGAAATCGGTTTGGtttgctcaaattttgatcaTATGATCAAATT
GCGAACTGATCTTTTAAGAGCATGGCGTTCTAATTCTAGCTTTTTTAGAA
CGACATGCATAAGAGGGGAGGAATTGTTAGAAACGTGAgaaaaaactgag
aaaatcaatttttgtctTTTGTTATGAACCAAGAAAAAAGCTAATGACAA
AAAGTCGAGGGACCAGGGtattttatacggactatgaatAAACTAATTCC
TGTTGACTAACTTTTGCTCGTTTTCTTTCTCACAACAGGTTCACAAGGAA
GTGAAGGAAGATGGAACAACAGAAAACACTCACATTTGCAGTAGTTTAAA
GAAATTATTCAACGAAGTCGAATGGTGGGCTAGAGCTGCCAAAGCACTTC
GTGAATCGGAAGGAAAACCaaac

Coding sequence (CDS) from alignment at sc0000297:311878..314150+

>TCONS_00018380 ID=TCONS_00018380|Name=TCONS_00018380|organism=Clytia hemisphaerica|type=CDS|length=2400bp|location=Sequence derived from alignment at sc0000297:311878..314150+ (Clytia hemisphaerica)
ATGGCTCCCATCAaactggtctgtattttatctTCTATTCGTGATGGTCG
TATGGGCGATCGTATGAAGAAACTTGTTGAAAGTCAATTCAATGAAGTAT
TGGGCTCTAAAGGACATACACTTGAAGTTATTGACCCAGCCGATTATGAT
TTACCAGTCCTGAAGTTACCTCTACATTTCCATCGCGATCCATCCCAAGC
TCCTGAGAACCTTAAGCAACTAAATGAAATTGTAATGAGCGCAGACGGTT
ACATTATCGTGACTGCAGAATACAATCGAAGTCTTCCACCAGCATTGACA
AACCTTATGGACCATCTACCGCCAACCAGTTTTGAATTCAAATCAAGTGG
TGTCGTATCTTACTCCATGAGCAATCAGGGTGGTGTTATGGCGGTCGCCT
CTGCACGCCCTTTCCTTTCAGAATTCGGATGCCTCCCAGTCAAACATTTC
GTAGCCGTCGATACTGTTCACAAGGAAGTGAAGGAAGATGGAACAACAGA
AAACACTCACATTTGCAGTAGTTTAAAGAAATTATTCAACGAAGTCGAAT
GGTGGGCTAGAGCTGCCAAAGCACTTCGTGAATCGGAAGGAAAACCaaac
ATGGCTCCCATCAaactggtctgtattttatctTCTATTCGTGATGGTCG
TATGGGCGATCGTATGAAGAAACTTGTTGAAAGTCAATTCAATGAAGTAT
TGGGCTCTAAAGGACATACACTTGAAGTTATTGACCCAGCCGATTATGAT
TTACCAGTCCTGAAGTTACCTCTACATTTCCATCGCGATCCATCCCAAGC
TCCTGAGAACCTTAAGCAACTAAATGAAATTGTAATGAGCGCAGACGGTT
ACATTATCGTGACTGCAGAATACAATCGAAGTCTTCCACCAGCATTGACA
AACCTTATGGACCATCTACCGCCAACCAGTTTTGAATTCAAATCAAGTGG
TGTCGTATCTTACTCCATGAGCAATCAGGGTGGTGTTATGGCGGTCGCCT
CTGCACGCCCTTTCCTTTCAGAATTCGGATGCCTCCCAGTCAAACATTTC
GTAGCCGTCGATACTGTTCACAAGGAAGTGAAGGAAGATGGAACAACAGA
AAACACTCACATTTGCAGTAGTTTAAAGAAATTATTCAACGAAGTCGAAT
GGTGGGCTAGAGCTGCCAAAGCACTTCGTGAATCGGAAGGAAAACCaaac
ATGGCTCCCATCAaactggtctgtattttatctTCTATTCGTGATGGTCG
TATGGGCGATCGTATGAAGAAACTTGTTGAAAGTCAATTCAATGAAGTAT
TGGGCTCTAAAGGACATACACTTGAAGTTATTGACCCAGCCGATTATGAT
TTACCAGTCCTGAAGTTACCTCTACATTTCCATCGCGATCCATCCCAAGC
TCCTGAGAACCTTAAGCAACTAAATGAAATTGTAATGAGCGCAGACGGTT
ACATTATCGTGACTGCAGAATACAATCGAAGTCTTCCACCAGCATTGACA
AACCTTATGGACCATCTACCGCCAACCAGTTTTGAATTCAAATCAAGTGG
TGTCGTATCTTACTCCATGAGCAATCAGGGTGGTGTTATGGCGGTCGCCT
CTGCACGCCCTTTCCTTTCAGAATTCGGATGCCTCCCAGTCAAACATTTC
GTAGCCGTCGATACTGTTCACAAGGAAGTGAAGGAAGATGGAACAACAGA
AAACACTCACATTTGCAGTAGTTTAAAGAAATTATTCAACGAAGTCGAAT
GGTGGGCTAGAGCTGCCAAAGCACTTCGTGAATCGGAAGGAAAACCaaac
ATGGCTCCCATCAaactggtctgtattttatctTCTATTCGTGATGGTCG
TATGGGCGATCGTATGAAGAAACTTGTTGAAAGTCAATTCAATGAAGTAT
TGGGCTCTAAAGGACATACACTTGAAGTTATTGACCCAGCCGATTATGAT
TTACCAGTCCTGAAGTTACCTCTACATTTCCATCGCGATCCATCCCAAGC
TCCTGAGAACCTTAAGCAACTAAATGAAATTGTAATGAGCGCAGACGGTT
ACATTATCGTGACTGCAGAATACAATCGAAGTCTTCCACCAGCATTGACA
AACCTTATGGACCATCTACCGCCAACCAGTTTTGAATTCAAATCAAGTGG
TGTCGTATCTTACTCCATGAGCAATCAGGGTGGTGTTATGGCGGTCGCCT
CTGCACGCCCTTTCCTTTCAGAATTCGGATGCCTCCCAGTCAAACATTTC
GTAGCCGTCGATACTGTTCACAAGGAAGTGAAGGAAGATGGAACAACAGA
AAACACTCACATTTGCAGTAGTTTAAAGAAATTATTCAACGAAGTCGAAT
GGTGGGCTAGAGCTGCCAAAGCACTTCGTGAATCGGAAGGAAAACCaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010306XLOC_010306Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018380-exon-sc0000297-1491911889:311878..311957TCONS_00018380-exon-sc0000297-1491911889:311878..311957Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1510915933:311878..311957TCONS_00018380-exon-sc0000297-1510915933:311878..311957Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1575043694:311878..311957TCONS_00018380-exon-sc0000297-1575043694:311878..311957Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1491911889:312345..312543TCONS_00018380-exon-sc0000297-1491911889:312345..312543Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1510915933:312345..312543TCONS_00018380-exon-sc0000297-1510915933:312345..312543Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1575043694:312345..312543TCONS_00018380-exon-sc0000297-1575043694:312345..312543Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1491911889:312790..312985TCONS_00018380-exon-sc0000297-1491911889:312790..312985Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1510915933:312790..312985TCONS_00018380-exon-sc0000297-1510915933:312790..312985Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1575043694:312790..312985TCONS_00018380-exon-sc0000297-1575043694:312790..312985Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1491911889:313335..313470TCONS_00018380-exon-sc0000297-1491911889:313335..313470Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1510915933:313335..313470TCONS_00018380-exon-sc0000297-1510915933:313335..313470Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1575043694:313335..313470TCONS_00018380-exon-sc0000297-1575043694:313335..313470Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1491911889:314016..314150TCONS_00018380-exon-sc0000297-1491911889:314016..314150Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1510915933:314016..314150TCONS_00018380-exon-sc0000297-1510915933:314016..314150Clytia hemisphaericaexon
TCONS_00018380-exon-sc0000297-1575043694:314016..314150TCONS_00018380-exon-sc0000297-1575043694:314016..314150Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018380-proteinTCONS_00018380-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000297supercontigsc0000297:311878..314150 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.2379	99.1505	118.863	129.755	39.9143	26.8238	21.7444	24.5713	45.3178	35.0317	79.0494	21.692	268.73	213.872	47.4187	104.07	280.515	428.99	228.108	179.979	295.367	291.348	89.9917	96.8977	202.087	218.215	544.448	547.018	28.3049	27.4934
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005025FMN_Rdtase-like
IPR029039Flavoprotein-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00018380 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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