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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018355 ID=TCONS_00018355|Name=TCONS_00018355|organism=Clytia hemisphaerica|type=transcript|length=2022bp
GCTTTTATGGGATACTTTGTGTACTTGTCAGGAAATCTGTTGAATTATTA
GAAACTGTAGAATATTTTAAATGATTAAACACCCCCTTGAAAATGGATCA
CTCTGGCTCTAAGTTCTCTTTGATTTCATccattcaaaatattgtttcaa
aTAAGACCAATGAACTTGGCCAAGATTTTGAGAAACTTAGTGTAGATTTT
GTTCCATATTgcatatatatatttttaaactttCCTTTCAGGTCTTCCTT
TGAGGTATCTACACATTGTAAACCATGTTCAAAGATGAAAATCTTGAATC
CATCAATATTAAATCGGACACACTTTCTGAAAAATATGTCCGAGATCAAT
CTTGTCAAACCAAACCGATCGAATTAAAGAATCAATACAGTCAAGCTATT
CTTAGACTCTCTGTTGATGTCCAAACAGAGCTCAGTCATACACCAGCTTC
TGTAACTCGACTGAGAGTTGATAACTCAAAAAAGCTGGAAACTTTTATGT
TGACAGTTTATCCTCTAGTTAGTGAACAATTAACTGCAAATGTTCGAAGT
CATGCTTTTGATGATTATGAGTTAGATGAACTAAATATATCAGAAAATAT
TGAATGCAAAGTAACACTTACTTGTCCAGAACAAAAGGAAGAAGACAAAT
TAGACATCACATGTTTGTCATGGAATAGTATAGGATCAATTGTTGCTTCG
GCTTTGGGAAAATTCGAACATGATACATGGTGTACTCATCCTGCACAAAT
CCATATTTGGAATGTCAATAAACAAGAAAATTCAACACCCAATAAAACTA
TTGATGCAGATAATTGTGTGACAGCAATTGCTTTTCACCCAAGTGATCCT
CCGATTCTGGTCAGTGGAGATTTTTCGGGTAAAATTCATGTGTGGGATTT
AAGTAAGGAAGATAATATTCTGGTTGCATTCTCAGGTAAAGAGAACGAGA
CACACCATGAAGCTGTTAATCAACTTGTATGGATCCCTTCTACGGGCTCA
GTCTTGAACTTTATCAGCACAGGATCAGATGGTAACATCTTCTTATGGAT
GTATAACAAGCTCAAACAACATCTTGGATTGATCAGTACCTTTCAACTCT
CCAGTGATGTCATTCCTCGAAATGTGAGAAAAAGTAGCATGAGAAGTGGT
ACTGCCCTTGGTATTACGTGTGCTTCTTTAACATCTaatcaaaacaaaga
cattttggTTGGTACTGAAAATGGTGGCGTGTTTTgctgtaaagaaaaaa
ctaatggTGGTGGATACACTATTATTGCATTTGGTAGTCATGAAGCAACT
GTCAATTCTATTGACTCATCACAagcaatgaaaacattttttctgacTTG
TTCGTTAGATATGTGTATTCATGTTTATCAGGAATCACAATCGACACCTC
TGCATAAAGTGGATCCAATGTCAGGATATTTGTTTGCAGTTCAATGGTCT
CCTACCAAGCATGTATTTTACGTCTCAACAGCAGCAAGTAATATTCTGGT
CTATCAGATAGAAGACGATGAAGTTCATTTGAAAAATACCATCAACGTTG
GAAATAAAAAGGTTTGCATCAACTCACTAGCTGTAAACAAGGAGGACAAG
ATAGCATCTGCTGATTCTAATACTACCATCAAAATATGGGAATTCAAAAA
TGATTGATTGACACAGCACGTATTTAATGCAACCactatttttaatcttt
tttataacaaattgagagctttttcaacattttaaagCCATAATTCTTCA
AATCCGACCCTCAAATTCCTTTTTGGACCAAATACAATGATTATAGTTCT
GCtactataataaaaaaagaaaattttgatttatttgtaagaagattttt
agaaaattatttattgtTATGTTATTATAAATATGGAATTTATTTGATCA
GATTTTTATTTCTTACACACACCTGCATAGAATGCACAGTATTATTTCGA
GAACTTTGTTATAGTGGAAACTACTGTTACTTATGATGTACACTTTACAA
AAGTGTTTTGACTTTACAAGCT Run BLAST on NCBI transcript from alignment at sc0000297:92021..94042+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018355 ID=TCONS_00018355|Name=TCONS_00018355|organism=Clytia hemisphaerica|type=transcript|length=2022bp|location=Sequence derived from alignment at sc0000297:92021..94042+ (Clytia hemisphaerica)
GCTTTTATGGGATACTTTGTGTACTTGTCAGGAAATCTGTTGAATTATTA
GAAACTGTAGAATATTTTAAATGATTAAACACCCCCTTGAAAATGGATCA
CTCTGGCTCTAAGTTCTCTTTGATTTCATccattcaaaatattgtttcaa
aTAAGACCAATGAACTTGGCCAAGATTTTGAGAAACTTAGTGTAGATTTT
GTTCCATATTgcatatatatatttttaaactttCCTTTCAGGTCTTCCTT
TGAGGTATCTACACATTGTAAACCATGTTCAAAGATGAAAATCTTGAATC
CATCAATATTAAATCGGACACACTTTCTGAAAAATATGTCCGAGATCAAT
CTTGTCAAACCAAACCGATCGAATTAAAGAATCAATACAGTCAAGCTATT
CTTAGACTCTCTGTTGATGTCCAAACAGAGCTCAGTCATACACCAGCTTC
TGTAACTCGACTGAGAGTTGATAACTCAAAAAAGCTGGAAACTTTTATGT
TGACAGTTTATCCTCTAGTTAGTGAACAATTAACTGCAAATGTTCGAAGT
CATGCTTTTGATGATTATGAGTTAGATGAACTAAATATATCAGAAAATAT
TGAATGCAAAGTAACACTTACTTGTCCAGAACAAAAGGAAGAAGACAAAT
TAGACATCACATGTTTGTCATGGAATAGTATAGGATCAATTGTTGCTTCG
GCTTTGGGAAAATTCGAACATGATACATGGTGTACTCATCCTGCACAAAT
CCATATTTGGAATGTCAATAAACAAGAAAATTCAACACCCAATAAAACTA
TTGATGCAGATAATTGTGTGACAGCAATTGCTTTTCACCCAAGTGATCCT
CCGATTCTGGTCAGTGGAGATTTTTCGGGTAAAATTCATGTGTGGGATTT
AAGTAAGGAAGATAATATTCTGGTTGCATTCTCAGGTAAAGAGAACGAGA
CACACCATGAAGCTGTTAATCAACTTGTATGGATCCCTTCTACGGGCTCA
GTCTTGAACTTTATCAGCACAGGATCAGATGGTAACATCTTCTTATGGAT
GTATAACAAGCTCAAACAACATCTTGGATTGATCAGTACCTTTCAACTCT
CCAGTGATGTCATTCCTCGAAATGTGAGAAAAAGTAGCATGAGAAGTGGT
ACTGCCCTTGGTATTACGTGTGCTTCTTTAACATCTaatcaaaacaaaga
cattttggTTGGTACTGAAAATGGTGGCGTGTTTTgctgtaaagaaaaaa
ctaatggTGGTGGATACACTATTATTGCATTTGGTAGTCATGAAGCAACT
GTCAATTCTATTGACTCATCACAagcaatgaaaacattttttctgacTTG
TTCGTTAGATATGTGTATTCATGTTTATCAGGAATCACAATCGACACCTC
TGCATAAAGTGGATCCAATGTCAGGATATTTGTTTGCAGTTCAATGGTCT
CCTACCAAGCATGTATTTTACGTCTCAACAGCAGCAAGTAATATTCTGGT
CTATCAGATAGAAGACGATGAAGTTCATTTGAAAAATACCATCAACGTTG
GAAATAAAAAGGTTTGCATCAACTCACTAGCTGTAAACAAGGAGGACAAG
ATAGCATCTGCTGATTCTAATACTACCATCAAAATATGGGAATTCAAAAA
TGATTGATTGACACAGCACGTATTTAATGCAACCactatttttaatcttt
tttataacaaattgagagctttttcaacattttaaagCCATAATTCTTCA
AATCCGACCCTCAAATTCCTTTTTGGACCAAATACAATGATTATAGTTCT
GCtactataataaaaaaagaaaattttgatttatttgtaagaagattttt
agaaaattatttattgtTATGTTATTATAAATATGGAATTTATTTGATCA
GATTTTTATTTCTTACACACACCTGCATAGAATGCACAGTATTATTTCGA
GAACTTTGTTATAGTGGAAACTACTGTTACTTATGATGTACACTTTACAA
AAGTGTTTTGACTTTACAAGCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018355-exon-sc0000297-1491911889:92021..94042 | TCONS_00018355-exon-sc0000297-1491911889:92021..94042 | Clytia hemisphaerica | exon |
| TCONS_00018355-exon-sc0000297-1510915933:92021..94042 | TCONS_00018355-exon-sc0000297-1510915933:92021..94042 | Clytia hemisphaerica | exon |
| TCONS_00018355-exon-sc0000297-1575043694:92021..94042 | TCONS_00018355-exon-sc0000297-1575043694:92021..94042 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000297 | supercontig | sc0000297:92021..94042 + |
Blast
BLAST of TCONS_00018355 vs. Swiss-Prot (Human)
Match: WDR34 (WD repeat-containing protein 34 OS=Homo sapiens GN=WDR34 PE=1 SV=2) HSP 1 Score: 200.29 bits (508), Expect = 1.240e-55 Identity = 132/481 (27.44%), Postives = 231/481 (48.02%), Query Frame = 2
Query: 278 FKDENLESINIKSDTLSEKYVR--DQSCQTKPIELKNQYSQAILRLSVDVQTELSHTPASVTRLRVDNSKKLETFMLTVYPLVSEQLTANVRSHAFDDYELDELNISENIECKVTLTCPEQKEEDKLDITCLSWNSIGSIVASALGKFEHDTWCTHPAQIHIWNVNKQE--NSTPNKTIDADNCVTAIAFHPSDPPILVSGDFSGKIHVWDLSKEDNILVAFSGKENETHHEAVNQLVWIPSTGSVLNF--ISTGSDGNIFLWMYNKLKQHLGLISTFQLSSDVIPRNVR-KSSMRSGTALGITCASLTSNQNKDILVGTENGGVFCCKEKTNGGGYTIIA------------FGSHEATVNSIDSSQAMKTFFLTCSLDMCIHVYQESQSTPLHKVDPMSGYLFAVQWSPTKH-VFYVSTAASNILVYQIEDDEVHLKNTINVGNKKVCINSLAVNKEDK--IASADSNTTIKIWEFKND 1654
+DE L ++ S + + +R +SCQT I + +QA + VQTE + P SV + +L F+ V +V +L N +SHAFD +E++ + + C TL P + + L +T +SWNS GS+VA A G+ +H W T + + WN+++++ P+ ++ + V +AFHP+ P + G +SG++ VWDLS+ ++ L+ +G ++TH + V+Q+VW+P G F +S +DG + LW + Q L L F L +PR+ + K R T +G T + +S + ++GTE G C T + F H + S+ S + FL+ D +H+Y Q+ PL + YLFAV+WSP + VF ++ ++ ++ ++ I + + L N + +A+ D+ T+K+W+ +
Sbjct: 38 LQDETLGVASVPSQWRAVQGIRWETKSCQTASIATASASAQARNHVDAQVQTE-APVPVSVQPPSQYDIPRLAAFLRRVEAMVIRELNKNWQSHAFDGFEVNWTEQQQMVSCLYTLGYPPAQAQG-LHVTSISWNSTGSVVACAYGRLDHGDWSTLKSFVCAWNLDRRDLRPQQPSAVVEVPSAVLCLAFHPTQPSHVAGGLYSGEVLVWDLSRLEDPLLWRTGLTDDTHTDPVSQVVWLPEPGHSHRFQVLSVATDGKVLLWQGIGVGQ-LQLTEGFALVMQQLPRSTKLKKHPRGETEVGATAVAFSSFDPRLFILGTEGGFPLKCSLAAGEAALTRMPSSVPLRAPAQFTFSPHGGPIYSVSCSPFHRNLFLSAGTDGHVHLYSMLQAPPLTSLQLSLKYLFAVRWSPVRPLVFAAASGKGDVQLFDLQKSSQKPTVLIKQTQDESPVYCLEFNSQQTQLLAAGDAQGTVKVWQLSTE 515
The following BLAST results are available for this feature:
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