TCONS_00018330 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00018330
Unique Name	TCONS_00018330
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2337

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000297:198..9389+

transcript sequence

>TCONS_00018330 ID=TCONS_00018330|Name=TCONS_00018330|organism=Clytia hemisphaerica|type=transcript|length=2337bp
gtTGAAAGAGCTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTTATT
CTTCAGTGGAGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGATAC
CAAGACATCAGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTCACA
AATCGCAATCTGTCTCTACAATTTAAGAGACTTCGATAATTCAGTGGAAT
ACTTTCGCGAGCTATACGACGCTGATCCAGAAATGTTGGAACATATTGAT
GTGTATTCAAATATCTTATACATCCAGgAGGACAGACCAGAATTGAGTCA
TTTAGCACATCACGTTTGTAAAGTGGACAAATATAGAACTGAATCGTGTG
TTGTGATAGGAAATTATTACAGTTTGCGAGGTGATCATGACAAAGCAGTG
ATGTATTTCAAACAAGCGCTGAGGTTGAATTCGAATTACGTTGCTGCATG
GACACTCCTTGGTCATGAATATGTAGAACTTAAAAATACTTCTGCTGCTA
TTTTATCTTACAGAAAAGCCACTGgaGTGAACCCTCACGACTTTCGTGGC
TGGTATGGACTTGGACAAACTTACGAACTTTTGAATATGCCTTTTTATTC
GCTCTGCTATTTTAAAGAAGCTCAAAAATTAAGACCGAACGATCCTCGAA
TGTTGATTGCACTTGGAGACACTTACAACACGATCGAGAACCTCAATGAA
GCCAAAAAGtgttTTCTGCGAGCAGTTCGACTCGGAGATTCAGAAGGCCA
AGCTATCGTCAAACTAGGAAGACTGCAAGAACAATGTAATGAGATGGAGG
AAGCAGCTTTATCCTACACAAAATATATCAAACGCCTCGAAAACTCTGTT
cACATCAGTGAAGACATAGCACACGCGTGTTTGTTTCTAGCAAGGCATCA
TTTAGACTTGAAGCAATATGATGAAGCGACCACTTATGCCAGGAAAGCCA
TGGAGTACACCGAGAGTCGTGACGAAGGAAAAACATTGATGTTCGAAATC
AGTCAGATGAGCTCAAGTGTGAAGTGAATCAAAGCTAATTCAAGTGTGAA
GTCACTCAAGGTTGGATTCCCTTCGTTAGAAGGTGAAGCGGATGTAGGTG
TTGTCCGACCGCTCAATGTTCGATGGTGTAGAAGGCGAAGAAGCTGTGCA
TCAGGTATTGAAAGATGGACTCATTCTGTGCAAAGTTATCAATATGCTGT
ACCCAGGCTCCGTACGCAAACTAAACAAAATGAAACAACCCTTCATGATG
ATGGAGAATATCTCAGCTTTCTTGGACGCTTGTGTAGCCTATGGTGTCCG
CCGCGGTGATTTATTCCAAACGGTTGATTTGTATGAACGTCAAAATATGG
TTTCTGTCATCCAGGGTATCTTCGCGCTCGGCCGTAAAGCGCAGACCAAT
GGTTACCGAGGCGCCGTTCTGGGTCCCAAAGAAGCCTCAGAAAACCACCG
TGAATTCACGTATGATCAAATGAACGAAGGGTTTAATATCATAGGCTTAC
AAATGGGATCCAACAAAGGCGCAAATCAATCGGGAGTCAATTTTGGGAAG
TCTAGGTTTATTATGGACTAACTTTTAatattgtaatttttcttttgtat
ttcatTTATTTGGCGCTGCTTTTCATAGTATTCcaagggaaatttttttt
gaaatctgcaATCGTAATCCAacgatattttcaatatttttttgaaattt
tgtgaaaaatgatACCGATTATTTTTACCGAGAATATTCGAACAAATTTA
ATTCCGGGGTTccatagtctagcaagctagacgactaatttatacatagt
agaaataaagtaaaaagtaatgaatggaacaattttagtcgtctagaaac
ctttgtgcactaactccaaacaaaagaaaagtgtcaatattgcaattata
attttttcctgctcaaaataattcttgagaaaaaagaatatgtgtggatt
tgtgtattgaaagtttttcatttgagttgatttcgttttgagagtttgtt
gttgcttgataaattgttttctNNattcttccagtcgtttatacaaacta
aatcccgtattattattattagtattggtattattagtattacacgcatt
ataaacgactccagtctaggggTTCCATAATATAGTAAGGAAGAATTTTG
CGATATTTTTAGTTAGAGTTTTTATTATTTATGTCTTTATGCTATACGTA
ACtgtcaaaaaataattaatttacattaaaatttaTCAGCATTATTTATT
GCAAGGTTTATTTTGCTGGCTACTTAGTTACTTACAGACTGAAagtataa
atttatttttgtctgaaaattATCCTTTATCGTCGCT

Run BLAST on NCBI

transcript from alignment at sc0000297:198..9389+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00018330 ID=TCONS_00018330|Name=TCONS_00018330|organism=Clytia hemisphaerica|type=transcript|length=9192bp|location=Sequence derived from alignment at sc0000297:198..9389+ (Clytia hemisphaerica)
gtTGAAAGAGCTGAAAGTACCGAAACACTGGATGAGTGAATTCTTTTATT
CTTCAGTGGAGTTGGAACTTCACATGGCGGAAGAAGCGCTAACCAGATAC
CAAGACATCAGCGCTGCTGGTTTTAACGGTAGTTCATACGTCAATTCACA
AATCGCAATCTGTCTCTACAATTTAAGAGGTAACTAAATTGGACCGACAA
TAGCCTGTTCTTGCAGGACCATTCGAATCATTACCAACTCCAATCCAGCA
AAAGCTCACAATTAGGTCTTTATTCCCTCAAAAGTTATtaagatttttgt
aaattttgagattttcgaATCTAAAGTTTTGATACAGTCCaaaaaacgcg
tccttataatattccactcctgtttatcttttcaacaagcacaaaaccta
GGCTAGACTACACAAAACTGTTATCCAGGCGCCGCGGCTCGACATTTTAA
GTGGTCGGGCCACATaatatagtgtctaaggaggcgccaccatggttggc
gccgacgggctagaaaattttgcgaatttcacTCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTTTT
CTTGAAGAAGATATCTTCacaaatccataaaatttgttcCAAAAGAGAAA
TTTAGTCAGCAAATTTATTAATGTTAGACTGTGTTTTGTAGAGCCTTAAA
TGATAATCTATACTGTAAAATATATTCATACAATGATTAGTCAAGATGGA
TGAAATATCTGATATAAAAAGAAGTTTACAAATCGTTCTCTGTAAATTTG
CCGAAAATATTTAGTCGCTCAGGTTGAACTCTAACAAACTCATTGGCAAT
ATCAATCAGAGATAGTGAGTCTCTAATGTTTCTTTATGTTCGTCatagtt
caattttttttctaactgACTTTTCAAAACCGGCCCTACCGCTGCCGCGG
CGCctgtagactagtaaaccacgtcgttgtatttcgctgcagattaaact
ttcaatgggatctatttttttatatgttttctgaatacaactgtctttcc
aatccactctcccgcggcaatttctatattttataagaactctttattat
ataagcactattcccgcgttcctgtgtccaaggaaagacagacgcttgct
agtctacgGCGCCTGTTatctagacgatgttatcgtccgttacagtgata
gtaaaggcgggaaaaaatggcggtatggcgttatggcggtatacggaaaa
aaatcggcgggagagtttcgaagaagtTTTCGAagactaccttattggaa
ctaattttcgcgggttttaattttagcgtttttcgcggtttttcgtcaaa
atcgcgaaaatttgatcccgcgaaaaattttaNNNNNNNNNNNNNNAgag
ttgaaaaccgcgaaaattaattcccgcgaaatacaattttttccaatttt
atcgaaaaatttgaaaaatccctaggaaaatgaaagaaatttgtccaaaa
aagggcaaaaccgcgaaaattaaaacccgccaaaattccagaatggaaaa
aaccgcgaaaattaaaacccgcgaaatgcaatttttcggatttttttttt
cgaccgggaaaattagttcccgcgaaaattagttccaataaggtagcaAC
TTTACCGACTGTAacctcttttcggcaaaaaaacccgtttgtgaattttc
ttcggctttgggcttttttctttgatagtgattcgtcttagactataaca
tagtctactgttatctaattcgaattctatcaaaagttatagccgtTTTG
GGAGTTTtattaaaatcagaaaaaagtgaaaaactatACGAGTGCTTGAA
GGTAGTTAGTGACTTCAGTGGAGAGATTCTAATAAAGTTCTTACCAAGAA
ACAATAAAGTTTccataaaaatttttttgtaagaacgtAAGAACAAGATG
AAGTTTCAACTTTTCCTTTACCTCTCATTAGACTTCGATAATTCAGTGGA
ATACTTTCGCGAGCTATACGACGCTGATCCAGAAATGTTGGAACATATTG
ATGTGTATTCAAATATCTTATACATCCAGGTGTGtgttgattgaaatttg
atttttcttttgttttcctcatttgttttgaagatttctggAAAAATGTT
ATTTGATAACGGGCGGACACCAAAAACAAGAAAGactcaaaaattacaaa
atctatcGAAAAGTTAGGGGACACCCGGGTTTGAACCAgggacctctcga
tctgcagtcgaatgctctaccactgagctatatccccatGATGTGATGTT
ATATCTCAGAGATAAAAGATATTAAACACTAGTATCATACTAAAGCCTGT
TCAATTCACACACTGGCAATCTTAcacgtttatttactttttcaggAGGA
CAGACCAGAATTGAGTCATTTAGCACATCACGTTTGTAAAGTGGACAAAT
ATAGAACTGAATCGTGTGTTGTGATAGGTAAATTATAGACACTTTTCCAA
TTCTATCCAGAATCATTATGTCATTCACTACAAGACCATTGCATTATGTA
GACACACCCTAggtaaaaacatccaaattttttacctgattgttttttaa
agtttagaCATATGGTTtcgaattttctgaaaattgttaaaaaggaaaat
gaatcTATTCGGCGACTGTTGCCAACAATCCCCCAAATATCCTTTAAACT
TGAATTTTTAAATGTGGCAAATTTTTTGCTCTTTCCCTTTCTATTCAAAC
GATTACAGGAAATTATTACAGTTTGCGAGGTGATCATGACAAAGCAGTGA
TGTATTTCAAACAAGCGCTGAGGTTGAATTCGAATTACGTTGCTGCATGG
ACACTCCTTGGTCATGAATATGTAGAACTTAAAAATACTTCTGCTGCTAT
TTTATCTTACAGAAAAGCCACTGGTgaggatttctttttttataataaga
tAATACAGTGTTAGATAATAAAGtgtattttttaaacattcgaACTATAA
AGACAATGCAGTGTCTCTTTAAACATTCAAATTGAAGACAATGCAGTGTC
TCTTTAAAAATTCGAACCGAAGACATTTGTTGTGTCGTCTCGTTAACTTT
TTATGAAGTCTTCTAGNcttgagttcgggaccactacGGTGCAGTTGTCT
ATGTCGATCaagcgtccacactaagctcagtgtcaacatggttatcatgc
aGGAATGtgagatacaccaggttcgataatgaagaacgtaccggcccagg
gcggaaacgcagcaggcaaaagttctcgcAGTGAGCAGTAGTAGGATAGC
GCCTGTGAATAGATGGTGTATCGTAGCCCGCGCAAGATAGTCGAACGAAG
CTTTTTCTCTCCACTTGTTGTCTTTCTTTACTCCTTCTTCCTATTTGAAA
CCTTAACATTCGAGTATGACAACCAGTTCAGAAGTTGCCAACCGCACTCT
TTCACTTTATCCTCATAAACAGCCAACTGCTGAAGATCCTCTCACTTTTT
AAAGTTTAGCCaggtctttttctttctttaggaGTGAACCCTCACGACTT
TCGTGGCTGGTATGGACTTGGACAAACTTACGAACTTTTGAATATGCCTT
TTTATTCGCTCTGCTATTTTAAAGAAGCTCAAAAATTAAGGTAAGTCGGA
TGATTTTTCCAAGCACCAAATGTACGACACGAAAAAAAGCACGAAGATGC
GGAAAAGATTAGGGGACACCCGGGTTTGAACCAgggacctctcgatctgc
agtcgaatgctctaccactgagctatatccccgcTATCTATACTGCTGAA
AATCACAATCAGTATTAAAAACTAACTACACTTCCTCTATGAATTTGATC
TCCATAGACCGAACGATCCTCGAATGTTGATTGCACTTGGAGACACTTAC
AACACGATCGAGAACCTCAATGAAGCCAAAAAGGTATCTCCATCCTTTCA
CTTTTAAATCGTAATGAAAATAACCGAAGGATAGCTAGTGGGAGCTAAGT
CTCTTGAAGAAAGTATAGAGATATTTAGGAAATATCCTTCCTGAAAgaga
attttagaaaaatcgCGTGGcgttatttttttagaaaaagagaAAGCTTT
TAGTAGAGCTGTCAATCATGGGATCTTACTGTCAATCAAAACtctattgt
tttttaattttcagtgttTTCTGCGAGCAGTTCGACTCGGAGATTCAGAA
GGCCAAGCTATCGTCAAACTAGGAAGGTATAGTGCACATCTATGTAAAAT
GAAACAGTTATAACGGGATAACGGGGTTATTACATTATGAAATTTACCAA
CCTAAATTATTGCCTTCCCATGTTTTCAATACAACTTTCCCATGTTTTTA
TTAGACTGCAAGAACAATGTAATGAGATGGAGGAAGCAGCTTTATCCTAC
ACAAAATATATCAAACGCCTCGAAAACTCTGTTGTAAGTTCTAAAATATT
GTGTACAATAAAATACCCAGAGTTGAATTcatttcaaaagctttttcttc
ttttttcgcatgttaaatattttaagcttttacaaattatactttaaaaa
atatttattttatttcccACTTGAGTTTGATAAAGTTTTATCCGACGACT
GTTTTGTGACATCACTTTTCATAACTCCCCCATCCAAGTCAATCAACATT
TCTTGTAGCACGTGTATGTAGCTTGATGCTTGAGTCAACATTTCTAAACG
TGTTGCTCGCTTTTGTTGTTGTGATAAAACTGGCAAAGAATCTTGTAATT
CTTCGTAAGCTTTTCGTTCTGCATCTCTCAATTTACCATATCCTCCACGT
TTGAGCGAAGGTAACTTTGTTgattttgatgttgtttcttgCTGCATTTT
TAAAGATCGGTTGCTCCCCTCCTCTCGTCTCATTTGTCTTTTTGCTAGAG
CTGTAAAGATTTTTCTTTCCATTtcctatttttatatttttacgaCCATG
AAATCGACAACATGAAATGAATATTTCGCAATAAAAGAGACTGattgtgt
tttgttttcaattactCAATTGTCAATCGAATATATtttgattcgaatgt
tttgatcacgCGTTcgaaccactgacctttatataacgaATCATTTAAAA
GGAACTCGTTCGAATGTTATGAATGATGTCACTTTGAGATTCGATTCGAC
TTTTTAACAAGAATTTGAATGAATGTGTTGTATCTGTTGTatctttttta
ttgtatttttcttcatttcagcACATCAGTGAAGACATAGCACACGCGTG
TTTGTTTCTAGCAAGGCATCATTTAGACTTGAAGCAATATGATGAAGCGA
CCACTTATGCCAGGAAAGCCATGGAGTACACCGAGGTAGGGATTTTAATG
AGTGATGTTGTtcatatacacgcttttttttgtaagaatggtgtttttcc
aatttatcatgaatgttcttaactttttgggaaaaatcatcctgaaacaT
TCTtgcggtattcttaggttttgaAACCCAGCCAAAATCTAGTATGTAAT
ACATACCTCAAGCAAAGATATAGTGTCTATCGATCCCTATGCTATGTCAG
GCTCGTATTAAGATTAGCCTTCTATTgctctcaaacaatagagctatTTC
TTGGGTTTtgggtaccaaaaactgagcctgcatatacTTGTAAAccttat
gcttataaaagaaaaaacatttaatggtgaaatgctctaaaaatggcatt
cttaggttcagttgccagATTCTATGTTGCCGTTAtatttaccatattct
taatttttggccgatttcatcataaatattcttataaagtatattacAGG
CCATTCGGCCTGTTCAAAAAAAGGCTTGATTCCGTTCTTCCTTTAACCGT
AGCATGTTTGTGTGTacattaaaagaagaaattttggcaggaatttaatt
tggcggatggccgaaaacgTTTTTTCAGAGGGNagaagaaattttggcag
gaatttaatttggcggatggccgaaaaagttttttcagaggaaatttaat
ttggcggttaacttgaaaaattaaacttggcggatgaaggacatttttgt
ccaaaaaacgtCATTAAAAAAGGatttgggggaataaatagaTAGGGCaa
tctaaatttggcgggaatttaatttggcggatgacggtaaaaataaaatt
tgccgggaacttaatttggcggattttgaccaaatccgccgaatccgcca
aattaagttcccgccaataTTTCTTCTCCCGCTAATCTGAACCTCTTTTG
TTCGaacctttctataattcgaactaattctcggTTCCCGTGAAAGGGAA
AGCCTCGTAAACTACTTTCTATAACTATAATCTTTCTGCAATTCGAATAA
ATTAGAATTCCCGTTCGacttcgaattagcgagagttaacTGTATGGTGt
gttttctgcgacggagacggctAGCTTCTGACTTGTCTAGATTCTGATTG
ACTGAGGACGACCGTAAATCAGCGCTTTTACCATTGATTTTAAACCCCCA
AAGTGGGTAGAGatgaatctctaacctttctcaagcaagcaAGAAGCCTG
AAGATTTGCACGCATTTAGAATGAGGGATTGAATCTagccctttctttgt
ttttaagcagcacatttttcgaaatctagcgataggttttactttcaata
tggagtttgtgtgaaaaccacacgGGTCATGCGCTTTGGATGGGAAATAT
GtagtttcatttcccatccaggagttctGGGTCTGGCCCCTTCGGGGTTT
TGGAATCATTGACTaataccgtcctcgattttgcgggtaaAAACTGCGGT
TTATACAAAATCACTTCAGAGACTCCACCGtcctcaaataaaaaacttaT
AATAAGAACCTGCTCGTGAAACGCTCCCCGAGGTATAAGCATAGACAGAG
ACAACCTTTTGGTAAACAacaatgtttctttttttctctgacAGAGTCGT
GACGAAGGAAAAACATTGATGTTCGAAATCAGTCAGATGAGCTCAAGTGT
GAAGTGAATCAAAGCTAATTCAAGTGTGAAGTCACTCAAGGTTGGATTCC
CTTCGTTAGAAGGTGAAGCGGATGTAGGTGAGAGCTCGGGCGATTCTGTG
AATGAGGACGTTTCACGTCGATTACGATGAGCTAGTGGTGAAGACTTTCT
TAGCATAATGCGTGAAGAACCTTTTGCTAACATGCTGGAAGTGGAAATAT
TACCATGACTTGTTCTTTCTTTTTCCATGTTTTTCAATGTatcaaataat
attttatttttagttttttttcacaaCGTCAATTTTTCGAAACAGTCTAA
CTGCTGATTCGGTGTCGAAAGTTTTcaataattataaattttgatgaatt
ttttgtatAGTGTTCAACCACtgctcattttttttctttccaacagTGAA
GAATTGttagataatgaataatgaatttCTTTTCTCCATACATTTCTGAC
ACCCATATAAACGTAATCAATTTATCGGTTGCCCtcttgattattttgaa
tatgagctatttataatttcttaccccttttctgtgtttttttatattat
gttttttcttctcGAAATCACTTCACTTTTGGGCGACCGTTGAGCCGTAG
TGTTTTGATTGCGTTCAAAGGATTTTCGTTAGATAGCCTGTGTAGCGACA
TAATAAACAATGGCTCATCGCCCACGCGCCTACGGTCTAACGGCTGAAGT
AAACAGTAAGATCAAGAGTAAATATGAACTAGAAGATGAAAAGAAAGTAC
TTAGATGGATTGCAGAGGTAAAGACATTTTCTTCCTTACATCTTTTCTGG
CTGAACATTATTTGAATACGGATTTCTCCGCCCTACTTTCTATCATTAAT
TTTACTTGTCAACAACTTAACATCTTTTCTTTTAACATGTTTATTCCTCA
AGGTGTTGTCCGACCGCTCAATGTTCGATGGTGTAGAAGGCGAAGAAGCT
GTGCATCAGGTATTGAAAGATGGACTCATTCTGTGCAAAGTTATCAATAT
GCTGTACCCAGGCTCCGTACGCAAACTAAACAAAATGAAACAACCCTTCA
TGATGATGGAGAATATCTCAGCTTTCTTGGACGCTTGTGTAGCCTATGGT
GTCCGCCGCGGTGATTTATTCCAAACGGTTGATTTGTATGAACGTCAAAA
TATGGTTTCTGTCATCCAGGGTATCTTCGCGCTCGGCCGTAAAGCGCAGA
CCAATGGTTACCGAGGCGCCGTTCTGGGTCCCAAAGAAGCCTCAGAAAAC
CACCGTGAATTCACGTATGATCAAATGAACGAAGGGTTTAATATCATAGG
CTTACAAATGGGATCCAACAAAGGCGCAAATCAATCGGGAGTCAATTTTG
GGAAGTCTAGGTTTATTATGGACTAACTTTTAatattgtaatttttcttt
tgtatttcatTTATTTGGCGCTGCTTTTCATAGTATTCcaagggaaattt
tttttgaaatctgcaATCGTAATCCAacgatattttcaatatttttttga
aattttgtgaaaaatgatACCGATTATTTTTACCGAGAATATTCGAACAA
ATTTAATTCCGGGGTTccatagtctagcaagctagacgactaatttatac
atagtagaaataaagtaaaaagtaatgaatggaacaattttagtcgtcta
gaaacctttgtgcactaactccaaacaaaagaaaagtgtcaatattgcaa
ttataattttttcctgctcaaaataattcttgagaaaaaagaatatgtgt
ggatttgtgtattgaaagtttttcatttgagttgatttcgttttgagagt
ttgttgttgcttgataaattgttttctNNattcttccagtcgtttataca
aactaaatcccgtattattattattagtattggtattattagtattacac
gcattataaacgactccagtctaggggTTCCATAATATAGTAAGGAAGAA
TTTTGCGATATTTTTAGTTAGAGTTTTTATTATTTATGTCTTTATGCTAT
ACGTAACtgtcaaaaaataattaatttacattaaaatttaTCAGCATTAT
TTATTGCAAGGTTTATTTTGCTGGCTACTTAGTTACTTACAGACTGAAag
tataaatttatttttgtctgaaaattATCCTTTATCGTCGCT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_010296	XLOC_010296	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000297	supercontig	sc0000297:198..9389 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
18.0524	18.676	8.24802	7.06558	2.27605	2.63442	4.89341	4.28479	4.64858	6.49624	5.74544	4.37461	0.50141	1.24263	8.45836	8.962	6.15574	6.57922	1.06979	0.241335	7.62254	8.32487	19.1084	15.949	7.08347e-07	2.43113	6.48199	5.89935	12.3328	13.9576

Blast

[Close]

BLAST of TCONS_00018330 vs. Swiss-Prot (Human)
Match: CDC23 (Cell division cycle protein 23 homolog OS=Homo sapiens GN=CDC23 PE=1 SV=3)

HSP 1 Score: 359.377 bits (921), Expect = 4.672e-113
Identity = 170/338 (50.30%), Postives = 239/338 (70.71%), Query Frame = 2

Query:    2 LKELKVPKHWMSEFFYSSVELELHMAEEALTRYQDISAAGFNGSSYVNSQIAICLYNLRDFDNSVEYFRELYDADPEMLEHIDVYSNILYIQEDRPELSHLAHHVCKVDKYRTESCVVIGNYYSLRGDHDKAVMYFKQALRLNSNYVAAWTLLGHEYVELKNTSAAILSYRKATGVNPHDFRGWYGLGQTYELLNMPFYSLCYFKEAQKLRPNDPRMLIALGDTYNTIENLNEAKKCFLRAVRLGDSEGQAIVKLGRLQEQCNEMEEAALSYTKYIKRLENSVHISEDIAHACLF--LARHHLDLKQYDEATTYARKAMEYTESRDEGKTLMFEISQM 1009
            LK L +P  WM EFF + +  EL + EEAL +YQ++   GF+ SSY+ SQIA+  +N+RD D ++  F EL   DP  +E++D +SN+LY++  + ELS+LAH++C++DKYR E+C VIGNYYSLR  H+KA +YF++AL+LN  Y+ AWTL+GHEY+E+KNTSAAI +YR A  VN  D+R WYGLGQTYE+L MPFY L Y++ A +LRPND RML+ALG+ Y  +  L EAKKC+ RA  +GD E  A+VKL +L EQ  E E+AA  Y KYI+ + +   I E +  +  F  LA+++   K +DEA+T A+K   + ++R+EGK L+ +I Q+
Sbjct:  219 LKFLSLPDTWMKEFFLAHIYTELQLIEEALQKYQNLIDVGFSKSSYIVSQIAVAYHNIRDIDKALSIFNELRKQDPYRIENMDTFSNLLYVRSMKSELSYLAHNLCEIDKYRVETCCVIGNYYSLRSQHEKAALYFQRALKLNPRYLGAWTLMGHEYMEMKNTSAAIQAYRHAIEVNKRDYRAWYGLGQTYEILKMPFYCLYYYRRAHQLRPNDSRMLVALGECYEKLNQLVEAKKCYWRAYAVGDVEKMALVKLAKLHEQLTESEQAAQCYIKYIQDIYSCGEIVEHLEESTAFRYLAQYYFKCKLWDEASTCAQKCCAFNDTREEGKALLRQILQL 556

The following BLAST results are available for this feature:

BLAST of TCONS_00018330 vs. Swiss-Prot (Human)

BLAST of TCONS_00018330 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CDC23	4.672e-113	50.30	Cell division cycle protein 23 homolog OS=Homo sap...	[more]

You are here

TCONS_00018330 (transcript) - C. hemisphaerica