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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018305 ID=TCONS_00018305|Name=TCONS_00018305|organism=Clytia hemisphaerica|type=transcript|length=1688bpRun BLAST on NCBI transcript from alignment at sc0000295:282352..296806- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018305 ID=TCONS_00018305|Name=TCONS_00018305|organism=Clytia hemisphaerica|type=transcript|length=14455bp|location=Sequence derived from alignment at sc0000295:282352..296806- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
No biomaterial libraries express this feature.
Blast
BLAST of TCONS_00018305 vs. Swiss-Prot (Human)
Match: S36A1 (Proton-coupled amino acid transporter 1 OS=Homo sapiens GN=SLC36A1 PE=1 SV=1) HSP 1 Score: 278.87 bits (712), Expect = 3.388e-86 Identity = 163/390 (41.79%), Postives = 247/390 (63.33%), Query Frame = 2
Query: 413 EKGTSNLATMVHIFKGNVGTGILSLPAAVKHAGVVAGPVGLCIIAFIAVHCMHMLVRCSHFFCRKTGKQAMSYGEVA----EECSKGIFKDKAYWPKRIVNLFLIVTQLGFCAVYFVFVASTIVEVAGWGD----------------KVDKRXXXXXXXXXXXXXSYIRSLEKLAYLSIIANICCVVGLITIYQYLARNLGDPTRLPMFSGVQNLPMFFAMALFSFEGIGVVLPLENEMQKPEDFGWVLNVGMGIISCMFVSMGLLGYVAFGDKIEGSVSLNLPDNYLYDGVKICYAIAMFLTYFLQFYVXXXXXXXXXXXKWQKRHGSCFEYTFRXXXXXXXXXXXXGIPLLDDFXXXXXXXXXXXXXXXFPPLIHTLTFWHHGLHPMA 1522
T+ T++H+ KGN+GTG+L LP AVK+AG+V GP+ L II +AVHCM +LV+C+H FCR+ K + YG+ E ++ A+W +R+V+ FLIVTQLGFC VYFVF+A +V + +D RL ++ + LL +IR+L L+ S++ANI +V L+ IYQ++ + + DP+ LP+ + + P+FF A+FSFEGIG+VLPLEN+M+ P F +L +GM I++ +++S+G LGY+ FG I+GS++LNLP+ +LY VK+ Y+I +F TY LQFYVP I++P +++ + + RTVLV T LA IP LD I+L+G+++S+ LA+I PPL+ TF+ G+ P+
Sbjct: 44 SNSTTWFQTLIHLLKGNIGTGLLGLPLAVKNAGIVMGPISLLIIGIVAVHCMGILVKCAHHFCRRLNKSFVDYGDTVMYGLESSPCSWLRNHAHWGRRVVDFFLIVTQLGFCCVYFVFLADNFKQVIEAANGTTNNCHNNETVILTPTMDSRLYMLSFLPFLVLLVFIRNLRALSIFSLLANITMLVSLVMIYQFIVQRIPDPSHLPLVAPWKTYPLFFGTAIFSFEGIGMVLPLENKMKDPRKFPLILYLGMVIVTILYISLGCLGYLQFGANIQGSITLNLPNCWLYQSVKLLYSIGIFFTYALQFYVPAEIIIPFFVSRAPEHCELVVDLFVRTVLVCLTCILAILIPRLDLVISLVGSVSSSALALIIPPLLEVTTFYSEGMSPLT 433 The following BLAST results are available for this feature:
BLAST of TCONS_00018305 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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