TCONS_00018298 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018298
Unique NameTCONS_00018298
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2148

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018298 ID=TCONS_00018298|Name=TCONS_00018298|organism=Clytia hemisphaerica|type=transcript|length=2148bp
ctcaatacaatcccacaatgcatcgctttttaagaaaaatcaaaaactcc
gataaagtCTATTGTTGAAAGAAGGCAATAAACATTTACCATTATTTGCA
GGTCTCCGTTTATTTAATGTGCAATTGATTCCATAATAGTCAGTAAAACA
TTCCTTTTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAGTTCATTCCGTAGTAATCAACAAAACATTCC
TTTTCACCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTT
GCAGTATGCTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTT
CACCAGTAATCAAGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAG
TATGTTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTTCACC
GGTAATCTTGTTACAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATG
TTGTACAGTTCACTCCGTAATAATCGACAAAACATTCCTTTTCACCAGTA
ATCTTGTTGCAGATGAAATTGCTCCCATCTTTGACTTTGCAGTATGTTGT
ACAATTAATTCCGTAGTAATCAACAAAACATTCCTTTTCTCCAGTAATCT
TGTTGCAGATGAAATTGCTTCCTTCTTCGACTTTGCAGTATGTTGTACAG
TTCACTCCGTAATAATCGGCAAAACACTCCTTTTCTCCAGTGATTTTGTT
GCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAATTCA
TTCCGTAATAATCAGCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAG
ATGAAATTGTTCCCATCTTTAACTTTGCAGTATGTTGTACAGTTCACTCC
GTAATAATCGGCAAAACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGA
AATTGCTCCCATCGTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAA
TAATCGGCAAAACACTCCTTTTCTCCAGTGATTCTGTTGCAGATGAAATT
GCTCCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAAT
CGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCC
ATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAA
ACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTC
AACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCC
TTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTT
GCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCT
CCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTA
TGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTG
GTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGT
ACAGTTCACTCCGTAATAATCGGCAAAACATTCCTTTTCTCCAGTGATTT
TGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTACAG
TTCACTCCGTAATAATCGGCAAAACATTCCTTCTCTCCCGTGATTTTGTT
GCAGATGAAATTGTTCCCATCTTTAACTTTGCAGTATCTTGTACAGTTCA
CTCCGTAATAATCGGCAAAACATTCCTTCTCTCCCGTGATTTTGTTGCAG
ATGAAATTGCTCCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCC
GTAATAATCAGCAAAACACTCCTTTTCTCCAGTGATTCTGTTGCAGATGA
AATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAA
TAATCAGCAAAACACTCCTTTTCTCCAGTAATTTTGTTGCAGATGAAATT
GCTTCCATCTTCAACTTTGCAATATGTTGTACAGTTCACTCCAAAGTAGT
TCTCATAACATTGCTTTTGGCCGGTGGTTTCATTGCAAAAGTAATGACCG
TTTGGAATTTCTTTACATTCTGTGTCTTCAATTTGAAGTCCGTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0000295:244649..247274-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018298 ID=TCONS_00018298|Name=TCONS_00018298|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at sc0000295:244649..247274- (Clytia hemisphaerica)
CTCAATACAATCCCACAATGCATCGCTTTTTAAGAAAAATCAAAAACTCC
GATAAAGTCTATTGTTGAAAGAAGGCAATAAACATTTACCATTATTTGCA
GGTCTCCGTTTATTTAATGTGCAATTGATTCCATAATAGTCAGTAAAACA
TTCCTTTTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAGTTCATTCCGTAGTAATCAACAAAACATTCC
TTTTCACCAGTGATTTTGTTGCAGATGAAATTGCTTCCATCTTTGACTTT
GCAGTATGCTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTT
CACCAGTAATCAAGTTGCAGATGAAATTGCTCCCATCTTCAACTTTGCAG
TATGTTGTACAGTTCACTCCGTAATAATCAACAAAACATTCCTTTTCACC
GGTAATCTTGTTACAGATGAAATTGCTCCCATCTTCAACTTTGCAGTATG
TTGTACAGTTCACTCCGTAATAATCGACAAAACATTCCTTTTCACCAGTA
ATCTTGTTGCAGATGAAATTGCTCCCATCTTTGACTTTGCAGTATGTTGT
ACAATTAATTCCGTAGTAATCAACAAAACATTCCTTTTCTCCAGTAATCT
TGTTGCAGATGAAATTGCTTCCTTCTTCGACTTTGCAGTATGTTGTACAG
TTCACTCCGTAATAATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTT
GCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCA
TTCCGTAATAATCAGCAAAACACTCCTTTGCTCCAGTGATTTTGTTGCAG
ATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAATTCATTCC
GTAATAATCAGCAAAACACTCCTTTTCTCCGGTGATTTTGTTGCAGATGA
AATTGCTCCCCTCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAA
TAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAATTGC
TTCCATCTTCAACTTTGCAGTTTGTTGTACAATTCATTCCGTAATAATCA
GCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCC
ATCTTCAACTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAA
AACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGTTCCCATCT
TTAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAAACA
TTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCGTCAA
CTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCGGCAAAACACTCC
TTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTCCCATCTTCAACTTT
GCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCT
CCAGTGGTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTA
TGTTGTACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTG
GTTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGT
ACAGTTCACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTG
TTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTT
CACTCCGTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAG
ATGAAATTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCC
GTAATAATCGGCAAACATCCTTTTCTCCAGTGGTTTTGTTGCAGATGAAA
TTGCTTCCATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATA
ATCGGCAAAACATTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGC
TCCCATCTTCAACATTGCAGTATGTTGTACAATTCATTCCGTAATAATCA
GCAAAACACTCCTTTTCTCCAGTGATTTTGTTGCAGATGAAATTGCTTCC
ATCTTCAACTTTGCAGTATGTTGTACAGTTCACTCCGTAATAATCGGCAA
AACATTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGTTCCCATCT
TTAACTTTGCAGTATCTTGTACAGTTCACTCCGTAATAATCGGCAAAACA
TTCCTTCTCTCCCGTGATTTTGTTGCAGATGAAATTGCTCCCATCTTCAA
CTTTGCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCC
TTTTCTCCAGTGATTCTGTTGCAGATGAAATTGCTTCCATCTTCAACTTT
GCAGTATGTTGTACAATTCATTCCGTAATAATCAGCAAAACACTCCTTTT
CTCCAGTAATTTTGTTGCAGATGAAATTGCTTCCATCTTCAACTTTGCAA
TATGTTGTACAGTTCACTCCAAAGTAGTTCTCATAACATTGCTTTTGGCC
GGTGGTTTCATTGCAAAAGTAATGACCGTTTGGAATTTCTTTACATTCTG
TGTCTTCAATTTGAAGTCCGTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010271XLOC_010271Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018298-exon-sc0000295-1575043694:246550..247274TCONS_00018298-exon-sc0000295-1575043694:246550..247274Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1575043694:245262..246167TCONS_00018298-exon-sc0000295-1575043694:245262..246167Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1575043694:244649..245165TCONS_00018298-exon-sc0000295-1575043694:244649..245165Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1510915933:246550..247274TCONS_00018298-exon-sc0000295-1510915933:246550..247274Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1510915933:245262..246167TCONS_00018298-exon-sc0000295-1510915933:245262..246167Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1510915933:244649..245165TCONS_00018298-exon-sc0000295-1510915933:244649..245165Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1491911889:246550..247274TCONS_00018298-exon-sc0000295-1491911889:246550..247274Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1491911889:245262..246167TCONS_00018298-exon-sc0000295-1491911889:245262..246167Clytia hemisphaericaexon
TCONS_00018298-exon-sc0000295-1491911889:244649..245165TCONS_00018298-exon-sc0000295-1491911889:244649..245165Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:244649..247274 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.0207167	0	0.0644794	0.101906	0.556426	0.794877	1.05433	0.71453	1.27243	1.20189	2.72486	2.43526	4.82678	3.76919	3.04594	2.68559	1.35822	1.80882	2.11333	3.32401	1.85193	1.52702	1.68416	0.370348	0.375458	0.226062	4.73867	3.30132
Blast
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BLAST of TCONS_00018298 vs. Swiss-Prot (Human)
Match: MEG11 (Multiple epidermal growth factor-like domains protein 11 OS=Homo sapiens GN=MEGF11 PE=2 SV=3)

HSP 1 Score: 97.4413 bits (241), Expect = 1.117e-20
Identity = 94/393 (23.92%), Postives = 144/393 (36.64%), Query Frame = -1 
Query:  115 ADYYGVNCTTYCKVEDGSNFICNRITG-------------EKECFADYYGMNCTTYCKVDDGSNFICNKITGEKECFADYYGVNCTTYCKVKD-----------GNNFICNKITGE-------------KECFADYYGMNCTTYCKVEDGSNFICNKITGEKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNLITGE-------------KECFVDYYGVNCTAYCKVKDGSNFICNKITG-------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCTL 1104
            +D++G +C+  C+ ++G+  +CN ITG             E+ C    +G  C   C+   G++  C+   GE  C   Y GV C   C                N   C+ ITGE             + C    +G NC+  C    G    C+ +TG+  C A Y G  C                   ++EC    +G  C+ +C   +G    C+  TG  EC   Y G  C                   E+ C    +G  CT  C  +  +   C+ +TG              + C V YYG  C   C  ++G++  C+ ITG                C    YG NC++ C   +G    C+ + G   C   + G++CTL
Sbjct:  135 SDHWGPHCSNRCQCQNGA--LCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGAS--CDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGGTCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRC-------------------QEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQ------------------ERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTL 478

HSP 2 Score: 89.3521 bits (220), Expect = 3.577e-18
Identity = 98/440 (22.27%), Postives = 153/440 (34.77%), Query Frame = -1 
Query:  118 YGVNCTTYCKVEDGSNFICNRITGEKECFADY-------------YGMNCTTYCKVDDGSNFICNKITGEKECFADY--------------YGVNCTTYCKVKDGNNFICNKITGE-------------KECFADYYGMNCTTYCKVEDGSNFICNKITG-------------EKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKD-----------GSNFICNKITGEKECFVDY-------------YGVNCTTYCKVEDGSNFICNKITGEKECFVDY-------------YGVNCTTYCKVEDGS-----NFICNLITG------EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFV-------------DYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCT 1095
            +G NC+  C    G    C+ +TG+  C A Y             +G  C+ +C   +G    C+  TG  EC   Y              +G  CT  C     N   C+ +TG              + C   YYG  C   C  ++G++  C+ ITG                C A  YG NC++ C    G    C+ + G   C   + G++CT  C                +   C+ I G   C   +             +G+NC+ +C         C+ +TG   C   +             +G NC+  C  E+G      +  C    G      ++ C   +YG  C   C +   S+  C+ I+G  EC                Y+G +C   C   +  N  C+ I G  +CF  + G +C+
Sbjct:  267 FGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG--CDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCAN--NGTCSPIDGSCQCFPGWIGKDCS 694

HSP 3 Score: 85.1149 bits (209), Expect = 6.204e-17
Identity = 97/440 (22.05%), Postives = 157/440 (35.68%), Query Frame = -1 
Query:  121 YYGVNCTTYCKVEDGSNFICNRITG-------------EKECFADYYGMNCTTYCKVDDGSNFICNKITGEKECFADYYGVNCTTYCKVKD-----------GNNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVEEGSN----------------FICNKITGEKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVD-------------YYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCK---------------------VEDGSNFICNLITG---EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKV-----------EDGSNFICNKITGEKECFTDYYGINC 1098
            YYG  C   C  ++G++  C+ ITG                C A  YG NC++ C  ++G    C+ + G   C   + G++CT  C                N   C+ I G   C   +             +G+NC+ +C         C+ +TG   C A +             +G NC+  C  E G +                 +C +I     C   +YG  C   C +   S+  C+ I+G  EC                Y+G +C   C   +  N  C+ I G  +CF  + G +C+  C                       EDG+       TG    + C   ++G +C   C+ ++G++  C+ I+G+  C   + G +C   C             E  +N  C+ +TG   C   + GI C
Sbjct:  398 YYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG--CDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGSCSPEDGSCECAPGFRGPLCQRI-----CPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCAN--NGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGAS--CDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRC 822
The following BLAST results are available for this feature:
BLAST of TCONS_00018298 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEG111.117e-2023.92Multiple epidermal growth factor-like domains prot... [more]
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