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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018297 ID=TCONS_00018297|Name=TCONS_00018297|organism=Clytia hemisphaerica|type=transcript|length=2434bpRun BLAST on NCBI transcript from alignment at sc0000295:244649..247274- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00018297 ID=TCONS_00018297|Name=TCONS_00018297|organism=Clytia hemisphaerica|type=transcript|length=2626bp|location=Sequence derived from alignment at sc0000295:244649..247274- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00018297 vs. Swiss-Prot (Human)
Match: MEG10 (Multiple epidermal growth factor-like domains protein 10 OS=Homo sapiens GN=MEGF10 PE=1 SV=1) HSP 1 Score: 62.7734 bits (151), Expect = 6.281e-18 Identity = 67/306 (21.90%), Postives = 109/306 (35.62%), Query Frame = -2
Query: 121 YGVNCTTYCKVEEGSNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGA--------------KECFADYYGMNCTTNCKVEDGSNFICNKITGE-------------KECFADYYGVNCTTYCKVEEGSNFICNKITGE-------------KECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTAYCKVKD---GSNFICNKITG---------------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 807
+G NC+ C+ G C+ TG+ C Y YG+ C C+ +G C ++GA + C YG+ C C + C+ ++GE + C +YG C C + G++ C+ +TG+ C + YGINC++ C K+ + +C+ + G C ++GV+C+ C G N C + G E C YG+NC C C+ TG C + G++C
Sbjct: 273 FGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKN--DAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHC 568 HSP 2 Score: 47.3654 bits (111), Expect = 6.281e-18 Identity = 34/123 (27.64%), Postives = 54/123 (43.90%), Query Frame = -1
Query: 827 EKECFADYYGVNCTTYCKVKDGNNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGMNCTTNCKVEDGSNFICNKTTGE 1117
C D++G +CT+ C+ K+G +CN ITG C A + YG +C C+ ++G+ C+ +TGE C Y +G C C ++G +C+ TGE
Sbjct: 136 SSACDGDHWGPHCTSRCQCKNG--ALCNPITGACHCAAGFRGWRCEDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGE 252 HSP 3 Score: 57.7658 bits (138), Expect = 1.624e-17 Identity = 58/251 (23.11%), Postives = 100/251 (39.84%), Query Frame = -2
Query: 121 YGVNCTTYCKVEEGS-----NFICNKITG------EKECFADYYGMNCTTYCKVEDGSNFICNKITGAKECFADYYGMNCTTNCKVEDGSNFICNKITGEKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDYYGINCTTYCKVKD-GSNFI----------CNKITGEKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 807
+G NC+ C + G+ + IC G ++ C +YG C+ C S+ C+ ITG +C + G +CN++ C + +G NC C +N CN I +C+ + G +C+ C G N I C+ GE +C + G+ CT + C + +YG +C C+ ++G++ C+ I+G+ C T + G +C
Sbjct: 577 WGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGA--------------LCNEV-----CPSGRFGKNCAGICTCT--NNGTCNPIDRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCT-------------------QRCPLGFYGKDCALICQCQNGAD--CDHISGQCTCRTGFMGRHC 785 HSP 4 Score: 51.2174 bits (121), Expect = 1.624e-17 Identity = 63/280 (22.50%), Postives = 101/280 (36.07%), Query Frame = -1
Query: 875 YGVNCTTYCKVEDGSNF-------ICNKT-TGEKDVCRLLRSELYNILQS*RWKQFHLQQNHWRKGCLPIITE*TVQHTAKLKMEAISSATKPLEKRMFAD------YYGVNCTTYCKVEDGSNFICNRITGEKECFADYYGMNCTTYCKVDD-----------GSNFICNKITGEKECFADYYGVNCTTYCKVKD---GNNFICNKITG---------------------EKECFADYYGMNCTTYCKVEDGSNFICNKITGEKECFADYYGMNCTTNC 1567
YGV C C+ +G +C GE+ RL LY I R HL+ H C P+ E A KP ++ + +YG C C ++G++ C+ +TG+ C + G++C+T C + ++ +C+ + G C A ++GV+C+ C G N C + G E C YG+NC C C+ TG C + G++C + C
Sbjct: 316 YGVLCAETCQCVNGGKCYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCP-CHLENTH---SCHPMSGE---------------CACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHCDSVC 572 HSP 5 Score: 63.929 bits (154), Expect = 2.698e-17 Identity = 69/314 (21.97%), Postives = 117/314 (37.26%), Query Frame = -2
Query: 85 YYGVNCTTYCKVEEGSNFICNKITGEKECFADYYGMNCTTYCKVED-----------GSNFICNKITGAKECFADYYGMNCTTNCKVED---GSNFICNKITG---------------------EKECFADYYGVNCTTYCKVEEGSNFICNKITGEKECFVDY-------------YGINCTTYCKVKDGS-----NFICNKITG------EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCTLNKRRPANNGK 810
+YG C C + G++ C+ +TG+ C + G++C+T C + ++ +C+ + G+ C A ++G++C+ C G N C + G E C YG+NC C C+ TG C + +G NC+ C K+G+ + IC G ++ C +YG C+ C S+ C+ ITG +C + +G NC C + N CN I +C+ + G +C+ PA+ G
Sbjct: 404 FYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGALCNEVCPSGRFGKNCAGICTCTN--NGTCNPIDRSCQCYPGWIGSDCS-QPCPPAHWGP 710 HSP 6 Score: 43.8986 bits (102), Expect = 2.698e-17 Identity = 52/226 (23.01%), Postives = 83/226 (36.73%), Query Frame = -1
Query: 791 EKRMFADYYGVNCTTYCKVEDGSNFICNRITGEKECFADY-------------YGMNCTTYCKVDDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVKDGNNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY--------------YGMNCTTNCKVEDGSNFICNKTTGEKDVCRLLRSELY 1309
E R YG +C C+ ++G+ C+ +TGE C Y +G C C +G +C+ +TGE C + + +G NC+ C+ +G C+ TG+ C Y YG+ C C+ +G C ++G C A + YG+ C C + C+ +GE C+ S LY
Sbjct: 179 EDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGECSCPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGEC-ACKPGWSGLY 395 The following BLAST results are available for this feature:
BLAST of TCONS_00018297 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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