TCONS_00018276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018276
Unique NameTCONS_00018276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3214

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018276 ID=TCONS_00018276|Name=TCONS_00018276|organism=Clytia hemisphaerica|type=transcript|length=3214bp
aagtcaaatcaaataaaaacccAAAATTTGTACAAAACAAAACGTACTTT
ACACATGTGACTATGTTGCCAGACACATCAAGCAACAACCACAACAATAA
ATACTCACGAACAAAACATCAACATCACGTGACacacaacaacaataaca
atacAGTGGTCTCTATGACAACAGAACAAAGCAAAGAAAGATCAATGACT
TCTTCTTGTTTGAATGAAGATTTATATTTCTCGGCAACTGAAGATGACGA
AGAAATGCTTTgctcaaaatgcagGAAAATATGTCGTCACTGTCGGTGCA
GTAGAGAAGATCACTGCTTACTACCGCCTACCATACAAGAGAAAACGTAC
AGTATAAGTAAATTTGCTGACCAACATCCAAGCAGTATGGGTAATGATGG
AGATAGTGGATGCTCGACTGAAGAATATGCATGGGTGCCACCTGGCGTCT
CTGGAGAACTGGTCAATGCTTACATGAACAGTTTACATGAAGACAAAATC
CCGTTTGTGAATAGTATTGGTGAAAACTATCGAGCCAAACAATTATTATA
CCAACTACCTCCTCATGATAGCGATTCAAAACATTGTCATAATTTatctg
aagaagaaaaacgTGAACTTCGCAGTTTTCACGGTCGACGACGTAAAGAT
TGTTTGGGTAGAGGAAACGTCCGCTTATTTCCGAACGTTGCGGAAGGAAG
TTCGGGTGTCTGCCAACAGTGTTCCAAACGTATCGTGCCTGGCGAAGTAG
TTGTTCACGCCTGGCGAGCAGGAAAAGAAGCATGCTGGCATCCGGCTTGT
TTTCAATGTACCACGTGTCAAGAATTGTTGGTTGATCTGGTGTATTTCTA
CCAAGAGGGACGCGTCTATTGCGGACGTCATCATGCTGAATTGTTGAAAC
CTAGATGTTCAGCTTGTGACGAGATCATTTTCTCGGATGAGTGTACAGAA
GCAGAGGGTCGTTTCTGGCATTTGGGACATTTCGCATGTTACGAGTGTGA
CAGTTCACTCGGTGGACAACGTTACGTCATGCGTGATAACCATCCAATTT
GTTGCGTctgttttgagaaaatgttcGCTGAGTTTTGCGATTCGTGTGGA
GAGCCGATCGGTATCGATGTCGGTCAAATGGCACACGGCAGTCAACATTG
GCACGCGAATGAGAAATGCTTCAGCTGTTTCAATTGCGGACAAACGTTAC
TCGGCCAACCATTTCTACCGAAAAACGGAGAAATCTTTTGCTCTTCCGGT
TGTAGTCGGGGCATCCCACCACCGAATCCGGTTAACCCGAAATATCCTCC
TCGATCAGCGTCAAGAAACCGATCTTACAGACCGTCGTCAGAAAGTTCAA
ACAATAATTCACGCGACGGGTATGTCAGTTCCAGTACAATGTCACCTGAA
CCGGTTCGCAAAATCGTCGAAATCAGATCGAAGGCTAGTTATCGAAGTTC
TTTGGATAAATACGGTCTAGCAGCAGCAGAGAAAATCGGTGATATAGTAC
GTAATATGCCGAACGGTGGCGTAATAAAGgaagaaagtgacgaaaaaGAC
GAGACGAGTTCCACTTGTTCTTCCGTCGCTTCCTCAAGAGCGAAGGAACT
TCCATCCTTTCCTCCCAGTAATCGTCACAGTAAGAAACCTATACTTCGTG
TTCCCCCGAAACAAAGACCTAAACCTACGGGACCGGAGATTTGGATCGAT
ATGGTACCCCCTAAAGAAGCGACCACGCATCGTAAACAAGAAGAGGACTG
GGAGAAACAATCTGTACGGAGCATGCGCAGTAACCGAAGCACGACGTCGA
CTAAAAAATATGGCGACGCTATGAGTCATTTGAACGGTAATGATACTATA
GAAAGACTTGTCCAAGGTGAACGACAAATTAATCGTCGGCACCGACGTCG
GAAAGTTGACGATTCATATTTCTCGGACTACGAAGTTGAGAGACGAAAAC
GCACGCAAAGACGTAAACAAACTCCTCTCGTTTATCAAATGGACGACGAA
AAACCTAACATCCCTCTTATGACTGTTAAATCGCGTTCAACAGAATCGTT
AGACGCGGGAAAAGCGCGTGTAGCGGGTCGCCGTGACGAACGGGACGGTA
AAAAGAAACGCACTAAATCGGAAACGAATTTAACGAACTCTAAAAATTAC
AAATCGAAAAATGACGCAGTTGCAAACTTAAGACTGAACATTGATGTCAA
TTCGCCGaagaaacaatcttacaataaaATGGAGTTGAGTAAGAAAGCAA
CCAATAAAAAAACAGAATCTAACGACTCCCGTAAACCAGCCCGTTCTTTC
GGTATGTTTTCGGCTGAAGATCAACAAATGACTCGAATTAATTACGTCAC
ACAAGACGATATGGCTATGGACCATCGAAGAAATAGTAAAAgtcccaaaa
aatcaaaaaggaaaAGTAAAAACCAAGGGCAATGTGTTATCTCATAACCA
TTTCATagttaatattttattttttattccaCTGATCTAGCTCTCTCctt
acatttgaaaattatgcatttttaactttttttggttttatatttttagt
tttactAAAATCTATTTTACATCATTCCTCTAGTGTATTATGGCAATGAT
TTGGAGAACTGAGTTTTTCACTCAGTTTAATGTTAAATCTGCACACATAA
TATGtaataataattttgaaattggttCGTCTTAGATCCCAAGGTAATTA
AAAGATTCAGAAATGTTGAATCCAAAAAGTGGTTCAAGTCTCAAGGCTCT
GGGTACGATATTAGATCATAAATCAAATGATCGTGAAATGTATTTTTTCA
TTGTGAAATATATTAGAATATGTTAGGTTTAGTGCTCCGTGTGCAGGCTG
TGAAAAATTCACCGCCGGGTGTCAATTAAATTATGTATTTTCTTAAGTGT
TGTTATATAtacaaaaggaaaataaaaaatgtaaataatgaAATAACAAA
ATGTTAATAAAACAAAGTAAAATCTATGTTTGCTAATCTGAGTAAGAATT
TCTTACAAGGACGGTCTACCCAGGGAGCTGGAACAGTCTTTTCGGTCTGT
AATAGCGAACAACTCTGTCGACCCTGGGTTTTTCTTTTAAGGGAAATTTG
AGTGAATTCAAAAACTTCTctattagtagggggaaatttgtaaaatcgct
cgacttttttagtcaaagcacttgttatacatttttggtaagctaagggg
taggggaatcaaaa
Run BLAST on NCBI

transcript from alignment at sc0000295:75106..83189-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018276 ID=TCONS_00018276|Name=TCONS_00018276|organism=Clytia hemisphaerica|type=transcript|length=8084bp|location=Sequence derived from alignment at sc0000295:75106..83189- (Clytia hemisphaerica)
AAGTCAAATCAAATAAAAACCCAAAATTTGTACAAAACAAAACGTACTTT
ACACATGTGACTATGTTGCCAGACACATCAAGCAACAACCACAACAATAA
ATACTCACGAACAAAACATCAACATCACGTGACACACAACAACAATAACA
ATACAGTGGTCTCTATGACAACAGAACAAAGCAAAGAAAGATCAATGACT
TCTTCTTGTTTGAATGAAGATTTATATTTCTCGGCAACTGAAGATGACGA
AGAAATGCTTTGCTCAAAATGCAGGTTTGTCTCCCTACCTTTTTCGAACC
TCTCAAAATGCAGGCTTGTCTCCTTACTTTTTTAAAACCTCTCAAAATGC
AGGTTTGTCTCCATAATTTTTTGAAACCTCTCAAGATGCAGGTTTGTCTC
CCTACTTTTTTCGAACCTCTCAATATAGGTTTGTGTCCCTATTTTTTTCC
AAAACTCAAAACCAATCAACATATTGGTTTATCTCCCTGTTTTTACAAAC
CTTTCCAGATACAGGTTTCCCTCCCTTTTTTATCTACCAACAGGCTTAAG
AAAATTCTCCAGGTTACAATGCAAGATTTTTTACCATACATTTCTTAACC
CTTATCACTTAGGTGATTTTGAATAAAGGAATTTTTTTCAGGAAAGTAGA
ATTTTCCTCTGAGCGTAGCGAATGCATTAATCTTATCTTTAAATGATCAT
TTTATCAACAGTGTTTCATTTAAATCGTCAATCTTGCAATGTTAATAGTA
TAAACTTTTTGATTGACGGGTATAAATTCAGAAAAAAAGAATGATACCTC
ACATAGTGAGGGAATTTTTAATGAACGAATTATCGATTTTTTTTCGTACC
AGTAAAAGATCTATAATACAGCTTCGAACGTTTTATAATATGGTCGTTCT
GATTTAATTACAGCCTTAACCCTTTCCGCCCGAAATTTATCATTTTTTAC
AAGATTTTTGTATTAGGTGGTTTGAAATAAAAAAAATGAATAGTTACAAA
CTTTTCTATGTTGAAAAATAACTATTCTACAATGTTCAACTCAAAATTAT
AGTCATTGGCTAATACTTCATATATTATTCAGAAAATGCTAAAAAAAAGC
GACGGGCAGTTAAAGGGTTAAATAATTTTCCAAGGATATTTCGATGTTTG
AAGAAATTATTTGTCATTTTCCATTTTGGTTTTTTATCTTTCAAAATTTG
TTCGGTTTGATTCATTAACAAAAAGGAAATTGGTTTTCAGCCGATAGAAA
ATCTAATTACATTTTCTTGTCCGTATCTCTTCAGACAGTTTCGTAACTCC
ATCTTCTTGTCATCGTTTGTCTTCTTAATTCCACACAATAATGTCTTGAC
AAGAATTTGGAAAATTTATAAAGAATTTTGTATAAGTCGTTAACTACCGC
TCCTTAGATTTAAATTTAGACTGATTTTTTGATAGATGTTATCAATTTCC
TTGGCGGATACTTTCATTTGTTTTGGAATTCCATGTATACTTTAGATTGT
TATTAGCAATATTTTTAGGTTTCAGAGATTCCGGAATAGGGCTAAAAATG
ACCCTGTTCTGATATTCCTATAATTGACGGATCAACAAGCTTGTCAGTTT
ATAACCTAATATTCGACAATTACTACCCCTCAAAGGAGACCCCCTTATTT
TGAACTACAGTCTTTCTACTCTCTCAGAATAATATGTAAACTAATAATAT
GGTGGGTTCATCATTAGATTTAGATTCTAACGGTAGATAGCAAAACCAAA
GCAAGGCGATCTTAGGCAAGTCTTTCAAAATTAGATTTTACTGAAAACCC
ACTACACGAGATTGACGTAGATTTGACGAATTTGTCTCCCCTATCGTGAT
ATAAAAGTCGCAAAGTGGAATAGACGTTAATTGCGTAAAAAAACGCGGGT
GACGTCTAGTATAGGCTATCCCCTATCGTGATATTTCAATGTAAGTGCCA
ATTATGCTATACAGTCTCCCATAAAAAACCTTTCATGCCTGCCAAGTTGA
ATTCAGCTCGTCAACAACATGTGACGATTTTATCTCCTTAATATGTCTTT
TTTGGAATTACAAGCGTGCTACTATTTCCGTCGACGGGAAATCAAACTCA
TTAAAATATGTTGGTTCATTTCTCATTAAAAGTGATTGTTTTTTTATGAA
AAGCAACCCTAATCTTCCTTTGAATTTAATTAAAAGAAATTTTGGTGTAT
TTTGCAACATAATTTTGTAAAATTTAGGAAAAACCGATATCTTTTGGTTT
TTGAATAATGCTCATTTTTTGATTGCATCTTTTCGCCTGATTTTTCAGTC
ATGAAATTTGTACTAAAATTACGACTAGCTATTTGGTAAATTTACTTGCA
ATTCTTCTTATGCCTAAAATAAAGTTTCGAAAATTGCTTGAAAATTATCG
TCTAATCATTACGGTTAAATTGCCATATGAACAGACAGACATTATAAATA
CTGCAACCAAAACAAAGCTATTAGTAAAAAAACTCCAAGTTGACAGTTTA
ATAGGGTGTTTGGTTGACACTTCGATCTTTTGCTGTTAATCATCTAAATG
CAATTTTAAGTACCGCAATTCTTCATTTTCGACATTATTTTCGTAACATT
TTTTTACTGACGCAAATTATAAACGCCTTGTTGTACGCGCGGCCCGGATA
TTGGTCATTTAGTTTCTTATGTAACACTACCTAGCGTTTGAATTTTGAAT
TTTTTGAAAGAGCGCGAGACGTTTTTGGTTCAAAAGATACCGCACAATTT
ACATTTCATGATAATTAGTTTTTCTTTTAATTGAAACCTATTTCATATGC
TAGCCTTTGGGTTATTACTTTTATTCATATTCTAGACAAGATGCTCTGCT
CCCTTCACTCTTCTTTTTTTTTCAATAAAGATGGCTAACTTTTCTTCGAG
GATACACAAGAAAATATAATCACATTATAGCGTTTATCTTCATTACAAAC
CGTAATATGAGTTCAGTAATATCTAATGACAGATTTGAAACAAACTCCCG
ATTTTTATCACAGCAAGGGGTCTTCAAACAGAACCCACATAATTGGGTCA
AAAGGTTTTTCAGTTGACCACCATCTTGAAATTTATACAACAATCTACCC
TAAAGAAGATTGACGGCTTATGGGGCTTTGTTGTTGTTGTATGATCTTTG
TGTTTTATAGATCACGCTGCGCTCTTAAACAAATCTCATTAATCAATTAA
AATTCTCAACCTCTTTTTAAAATGACCGCATAAAATATGAAATTCGTAAT
TTTTGATTCGATGAAGACTTTCTTCAATTTATGACGTAGGTCATAAACAT
AGCATTATATTTATTCATCAGATTCTAGTCACCAAATATCGACCCGACCT
CCACCTAACCTTGAAACCTATGACGTCGAATGATTAACTGTCAAAAATAT
TGAGGGAATCTTTACCATAAAAGATAAATTTTATATATTATCAAAAATTG
TGATCAGTTTTTTCTGGATTCTGATTTATAATCCTGGCTGATCTCCTATT
ATAATCGATTCACTATCAACTAAACTCATCATTTAAAACCAAACTTTCAA
CTCACAAACTATCGGCTCGAACGAAATGAAATACGCTCATACCTGCTCTA
TCAAAATCAGTATGATTCACTTATTTGTCCGAGAAAAATGGTTTCAAAGT
CTATAATTGAACTGTTGAAACTGCCTAATATTTAAAGAGGTGTGTTTCAT
GTTTAGTTTTTAACCATATCTTTTTTCCATTCTCTTTATGTAGGAAAATA
TGTCGTCACTGTCGGTGCAGTAGAGAAGATCACTGCTTACTACCGCCTAC
CATACAAGAGAAAACGTACAGTATAAGTAAATTTGCTGACCAACATCCAA
GCAGTATGGGTAATGATGGAGATAGTGGATGCTCGACTGAAGAATATGCA
TGGGTGCCACCTGGCGTCTCTGGAGAACTGGTATGTGAAAAAAACTGCTA
TTTTCGTTTCTTGACGTACTGTATACAAAAGTTCCGGTTCACTAAGGTTG
AATGAACGAATGAATTGTTTTTTTTATCGGAAGGATAGTGACTTGGATCC
CAGCTATGGGCATCTATAAGATTTCAAACCAAATTATCAGATTAAAAAAA
AGGGTTTTTGATTGACGTGTGGGATTATTTTTGAGCGTGATGTCTTGATA
AAGTCTTGTGACACATGTTGAATATTCTACATTCTTGAAAATCACTGAAA
TTCTACTCATCATTTGTCATTCATGTTAATCTTGTCAGACCTCCTTTCCT
CAATTGAATGATCATCTACTTTAAAAGTTCATTTTTAGTACAAATCCCTC
TTACTTTAAACGTATTTCAAATTTCAATACCCCATGATCAGATTTATTAC
CAATTCTGAGGATCATCTTCTCTTGAATGTCATTTTTGATGCATGGATTT
GCAAACTTGGAATAGGGCCTTTTTTGATGTGCAATATTTTGAATTTGAAC
TTGCTAAAGAATTGAGAAACTTTGATTCAGAAGACTTGTAAATGTCATTG
TTTATACAAAAGCCAAAAAGTCGAAAGCCCCATACTGCTGCTTGGGTAAT
ATTGAAATTCCACAGTTTTATTACGTAACATTTGAACAGTTATAATAAAA
AATCCGGTTTTTTTTATGGCGGGGGGTAAACCTGGGACCCTTCGCGTTAT
GACCCAGCGTTCTACATAGTGATCTTACCATTCGATATCTCGTACTGACA
TAATTAACCAATGACAACTAAGTTTAATGCAAATTAAACATATATTTAAC
TTGTTATTGATTATTGCATTTTTTATCTCGTCAGAGAGAACTTTCTACAT
CATTAGAACAAGATCTCATTAAGCCTCAATCTTTTTTAGGTCAATGCTTA
CATGAACAGTTTACATGAAGACAAAATCCCGTTTGTGAATAGTATTGGTG
AAAACTATCGAGCCAAACAATTATTATACCAACTACCTCCTCATGATAGC
GATTCAAAACATTGTCATAATTTATCTGAAGAAGAAAAACGTGAACTTCG
CAGTTTTCACGGTCGACGACGTAAAGATTGTTTGGGTAGAGGAAACGTCC
GCTTATTTCCGAACGTTGCGGAAGGAAGTTCGGGTGTCTGCCAACAGGTA
ACGAGAGATTATGTTTTCATTTAAAAGTATTTCTAATGAGTAAATTGTCG
AAGGTTTTTTTAAATGTGGTTTAAAAAAGGGTTTAAATCTTTGTTTATAG
ATGACTTTCTTTCTTGAAAAAGGAAATAAAATATGCTATTACTTCTTTAA
TAAAGTGAAGCTTTTTTTTGCAAATGTTCAAACATTTACTTTGTTTCATA
TCAGTGTTCCAAACGTATCGTGCCTGGCGAAGTAGTTGTTCACGCCTGGC
GAGCAGGAAAAGAAGCATGCTGGCATCCGGCTTGTTTTCAATGTACCACG
TGTCAAGAATTGTTGGTTGATCTGGTGTATTTCTACCAAGAGGGACGCGT
CTATTGCGGACGTCATCATGCTGAATTGTTGAAACCTAGATGTTCAGCTT
GTGACGAGGTTAGTNGGGACGCGTCTATTGCGGACGTCATCATGCTGAAT
TGTTGAAACCAAGATGTTCAGCTTGTGACGAGGTTAGTGTTTAATAAAAG
CTTTCTATCTTAAATGCCTTTGCTTGTACTTTCTACCAAGGTTGCATGCT
AAACAGGCTATTTCTTGTTAGGGGAGAAAATATTTCACTCTACCGTAGGT
GTTTTATTCATAAGTTAAAGTTTTAATTTGTGGACTTTTTTTTTGGACTA
TGAAGTTCACTTACTTAACCTTTTTTTGCCTTTCATTTTTCAGATCATTT
TCTCGGATGAGTGTACAGAAGCAGAGGGTCGTTTCTGGCATTTGGGACAT
TTCGCATGTTACGAGTGTGACAGTTCACTCGGTGGACAACGTTACGTCAT
GCGTGATAACCATCCAATTTGTTGCGTCTGTTTTGAGAAAATGTTCGCTG
AGTTTTGCGATTCGTGTGGAGAGCCGATCGGTATCGATGTCGGTCAAATG
GCACACGGCAGTCAACATTGGCACGCGAATGAGAAATGCTTCAGCTGTTT
CAATTGCGGACAAACGTTACTCGGCCAACCATTTCTACCGAAAAACGGAG
AAATCTTTTGCTCTTCCGGTTGTAGTCGGGGCATCCCACCACCGAATCCG
GTTAACCCGAAATATCCTCCTCGATCAGCGTCAAGAAACCGATCTTACAG
ACCGTCGTCAGAAAGTTCAAACAATAATTCACGCGACGGGTATGTCAGTT
CCAGTACAATGTCACCTGAACCGGTTCGCAAAATCGTCGAAATCAGATCG
AAGGCTAGTTATCGAAGTTCTTTGGATAAATACGGTCTAGCAGCAGCAGA
GAAAATCGGTGATATAGTACGTAATATGCCGAACGGTGGCGTAATAAAGG
AAGAAAGTGACGAAAAAGACGAGACGAGTTCCACTTGTTCTTCCGTCGCT
TCCTCAAGAGCGAAGGAACTTCCATCCTTTCCTCCCAGTAATCGTCACAG
TAAGAAACCTATACTTCGTGTTCCCCCGAAACAAAGACCTAAACCTACGG
GACCGGAGATTTGGATCGATATGGTACCCCCTAAAGAAGCGACCACGCAT
CGTAAACAAGAAGAGGACTGGGAGAAACAATCTGTACGGAGCATGCGCAG
TAACCGAAGCACGACGTCGACTAAAAAATATGGCGACGCTATGAGTCATT
TGAACGGTAATGATACTATAGAAAGACTTGTCCAAGGTGAACGACAAATT
AATCGTCGGCACCGACGTCGGAAAGTTGACGATTCATATTTCTCGGACTA
CGAAGTTGAGAGACGAAAACGCACGCAAAGACGTAAACAAACTCCTCTCG
TTTATCAAATGGACGACGAAAAACCTAACATCCCTCTTATGACTGTTAAA
TCGCGTTCAACAGAATCGTTAGACGCGGGAAAAGCGCGTGTAGCGGGTCG
CCGTGACGAACGGGACGGTAAAAAGAAACGCACTAAATCGGAAACGAATT
TAACGAACTCTAAAAATTACAAATCGAAAAATGACGCAGTTGCAAACTTA
AGACTGAACATTGATGTCAATTCGCCGAAGAAACAATCTTACAATAAAAT
GGAGTTGAGTAAGAAAGCAACCAATAAAAAAACAGAATCTAACGACTCCC
GTAAACCAGCCCGTTCTTTCGGTATGTTTTCGGCTGAAGATCAACAAATG
ACTCGAATTAATTACGTCACACAAGACGATATGGCTATGGACCATCGAAG
AAATAGTAAAAGTCCCAAAAAATCAAAAAGGAAAAGTAAAAACCAAGGGC
AATGTGTTATCTCATAACCATTTCATAGTTAATATTTTATTTTTTATTCC
ACTGATCTAGCTCTCTCCTTACATTTGAAAATTATGCATTTTTAACTTTT
TTTGGTTTTATATTTTTAGTTTTACTAAAATCTATTTTACATCATTCCTC
TAGTGTATTATGGCAATGATTTGGAGAACTGAGTTTTTCACTCAGTTTAA
TGTTAAATCTGCACACATAATATGTAATAATAATTTTGAAATTGGTTCGT
CTTAGATCCCAAGGTAATTAAAAGATTCAGAAATGTTGAATCCAAAAAGT
GGTTCAAGTCTCAAGGCTCTGGGTACGATATTAGATCATAAATCAAATGA
TCGTGAAATGTATTTTTTCATTGTGAAATATATTAGAATATGTTAGGTTT
AGTGCTCCGTGTGCAGGCTGTGAAAAATTCACCGCCGGGTGTCAATTAAA
TTATGTATTTTCTTAAGTGTTGTTATATATACAAAAGGAAAATAAAAAAT
GTAAATAATGAAATAACAAAATGTTAATAAAACAAAGTAAAATCTATGTT
TGCTAATCTGAGTAAGAATTTCTTACAAGGACGGTCTACCCAGGGAGCTG
GAACAGTCTTTTCGGTCTGTAATAGCGAACAACTCTGTCGACCCTGGGTT
TTTCTTTTAAGGGAAATTTGAGTGAATTCAAAAACTTCTCTATTAGTAGG
GGGAAATTTGTAAAATCGCTCGACTTTTTTAGTCAAAGCACTTGTTATAC
ATTTTTGGTAAGCTAAGGGGTAGGGGAATCAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010268XLOC_010268Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018276-exon-sc0000295-1575043694:82916..83189TCONS_00018276-exon-sc0000295-1575043694:82916..83189Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1575043694:79260..79446TCONS_00018276-exon-sc0000295-1575043694:79260..79446Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1575043694:78093..78350TCONS_00018276-exon-sc0000295-1575043694:78093..78350Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1575043694:77682..77885TCONS_00018276-exon-sc0000295-1575043694:77682..77885Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1575043694:75106..77396TCONS_00018276-exon-sc0000295-1575043694:75106..77396Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1510915933:82916..83189TCONS_00018276-exon-sc0000295-1510915933:82916..83189Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1510915933:79260..79446TCONS_00018276-exon-sc0000295-1510915933:79260..79446Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1510915933:78093..78350TCONS_00018276-exon-sc0000295-1510915933:78093..78350Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1510915933:77682..77885TCONS_00018276-exon-sc0000295-1510915933:77682..77885Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1510915933:75106..77396TCONS_00018276-exon-sc0000295-1510915933:75106..77396Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1491911889:82916..83189TCONS_00018276-exon-sc0000295-1491911889:82916..83189Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1491911889:79260..79446TCONS_00018276-exon-sc0000295-1491911889:79260..79446Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1491911889:78093..78350TCONS_00018276-exon-sc0000295-1491911889:78093..78350Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1491911889:77682..77885TCONS_00018276-exon-sc0000295-1491911889:77682..77885Clytia hemisphaericaexon
TCONS_00018276-exon-sc0000295-1491911889:75106..77396TCONS_00018276-exon-sc0000295-1491911889:75106..77396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:75106..83189 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.362611	0	0	0	8.08239	6.09755	30.3167	32.5264	18.4463	40.2585	16.0119	29.3792	8.39793	5.36327	8.77779	11.1526	7.6276	7.29265	7.80579	11.6669	4.94147	4.97814	4.98377	5.29858	6.47311	9.41271	17.9075	14.9954	1.27348	1.9886
Blast
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BLAST of TCONS_00018276 vs. Swiss-Prot (Human)
Match: PRIC3 (Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3 PE=1 SV=2)

HSP 1 Score: 400.593 bits (1028), Expect = 1.409e-125
Identity = 193/330 (58.48%), Postives = 246/330 (74.55%), Query Frame = 3 
Query:  273 RKICRHCRCSREDHCLLPPTIQEKTYSISKFADQHPSSMGNDGDSGCSTEEYAWVPPGVSGELVNAYMNSLHEDKIPFVNSIGENYRAKQLLYQLPPHDSDSKHCHNLSEEEKRELRSFHGRRRKDCLGRGNVRLFPNVAEGSSGVCQQCSKRIVPGEVVVHAWRAGKEACWHPACFQCTTCQELLVDLVYFYQEGRVYCGRHHAELLKPRCSACDEIIFSDECTEAEGRFWHLGHFACYECDSSLGGQRYVMRDNHPICCVCFEKMFAEFCDSCGEPIGIDVGQMAHGSQHWHANEKCFSCFNCGQTLLGQPFLPKNGEIFCSSGCSRG 1262
            RKIC+HC+C RE+H +    +  +       +D    S+ +D DSGC++EEYAWVPPG+  E V  + + L EDK+P+VNS GE YR KQLL+QLPPHDS++++C  L EEEK+ELR+F  +R+++ LGRG VR+FP    G+  +C++C K+I  G++ V A RAG  ACWHP CF CTTCQELLVDL+YFY  G+VYCGRHHAE L+PRC ACDEIIFS ECTEAEGR WH+ HF C+EC++SLGGQRYVMR + P CC C+E   AE+CD CGE IG+D GQMA+  QHWHA+++CF C  CG+ LLG+PFLP+ G IFCS  CS G
Sbjct:   43 RKICQHCKCPREEHAVHAVPVDLERIMCRLISDFQRHSISDD-DSGCASEEYAWVPPGLKPEQVYQFFSCLPEDKVPYVNSPGEKYRIKQLLHQLPPHDSEAQYCTALEEEEKKELRAFSQQRKRENLGRGIVRIFPVTITGA--ICEECGKQIGGGDIAVFASRAGLGACWHPQCFVCTTCQELLVDLIYFYHVGKVYCGRHHAECLRPRCQACDEIIFSPECTEAEGRHWHMDHFCCFECEASLGGQRYVMRQSRPHCCACYEARHAEYCDGCGEHIGLDQGQMAYEGQHWHASDRCFCCSRCGRALLGRPFLPRRGLIFCSRACSLG 369
The following BLAST results are available for this feature:
BLAST of TCONS_00018276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRIC31.409e-12558.48Prickle-like protein 3 OS=Homo sapiens GN=PRICKLE3... [more]
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