|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018272 ID=TCONS_00018272|Name=TCONS_00018272|organism=Clytia hemisphaerica|type=transcript|length=2764bp
GAAAAATAAGAGAACATTTCTTCGTTTCTTTTGTTGTgataataaaaatg
aagaaaaataaaaaataatattggagaagggagaaaaatagaagaagaac
gaagaaaaaataaagattcataaaattataaagaagaactttaaaagatc
GGTTTGTAACCTTGATATCAACAATTACTGGTCATTAAGAAGACAAAAGA
AACACGAGAGCCATCTTCTGATTGAAGAAGATCTTCATACAAAACCTATG
TCACGTGAACACACCAACCTCTTACGAGAAGCAACCGAGAAACGACGAAA
CATGTCGGTCAaatgtcgttctttttgtcggaCATCATGCTGTCGCTTAA
AGCCGGAAACCAATTTAGCATTGATGTTATGTTTGGTATTTTATTTGTAC
ATTTGTCTGGGTGGAGCATTGTTTTTGCTGTTGGAAGGACAAGCAGAAAC
ACCAGATGGTACAAACATCCATAAAGATCGTATGCAAGGATTAATGGACA
ATTTAAAGATAGTATTGGATCGAGACAACACGAAACAGATTACACATTAT
TGTGAGCAATCCACTGGTTTCCAGATGAGGAAAAAACCAGCACATGAGAA
TCTATGGTCATTCTTAGAGTCGACTGATTTTGCATACCAAGTGGTGACTG
GACAAGGAACAATTCAATCTACAAGAACCATTTTCACAACTGGTGGCAAG
ATCTCATACATCATTTTCCTTTTCCTTGGAATACCTCTCACAGTATTGAC
CTTCAGAGCTACTGGGCAACGTTTAAACATAATGGTTTATGCTTTCATTC
GGTTTATTAACGTCAAAGTATTCAGTAGGCAACTAACAGCCAATGTCCAC
ATAAAAGCCTTGATCTtaaacattttcatcttcataatCACTATTCTGAT
TGGGGCGAGCATGTATTGTGTCACACAAGGGTGGAGTTATCTGGACTCAC
TCTTCTACACTATGAGCGTTTCATTTACCGTTAGTAACAGCCAAGAAAAT
ATAGTCAACCAAAACATTGCAATGAATTCGAATAAGGATAAGGCGTACCG
AATCCTATTCAATTTTTATACTTTTGTGGCTTATACAGTCTTGGCTTCGT
TGACGTGGAGTGCACATCATTTTACAAGACATATGAGATTTAAAGCACAG
AATCGCCAGTTAAAGAATGGAGACGTACATTCGACTTGTCCATGGGTTGA
AGTGACACGAAGTAAAACAGCTTCACCGAGCAAAAGCACCAGAGAAAGAG
AGACTGATCGAGAATCTGTTTGTTAACGTTATGATTGATGAAAAAGTGAA
TAAATGAGTGAACGAATTGAAAACTACAATTATCATCATTCTGTTAACCT
TGGAGTGTGCAATGAGGTAAGAAGTAGCATACTCTTTAGAGAGAAAATCA
GTCCTTTCATCTCACATGCAGAGTAGCAGATTACACAAGAAAAATCACGt
cagagaaattttgaaataaagatcAAGGTAAGAAAACATCGATACTGTTG
ATATTAAGAAGAATGGACAGATTTCAATGCACCCTTGGTTAGCAGCAAGT
ACCAATTGAGATGTTTCAGGAACACATAAAATGAACAATCCAAGCCAAAA
ACACAGTATGGACTACATTTCTTCACctaaaaatagagaaaattttgaaa
ggttAACTACTCGTCACGTGTgtcaagttaaaaaaatttgaaataattct
ccACTATTTGATTGATGATCGATTGACGAAAATATAATGCCGAAATGTTG
TCCAGAGAGGAAAGAGGAAAGATTTTGATTGACTAATTCTTGCCGAAAAT
ATGTTCTTTGTTTATAAGAATTAACTGAATACGTATTCGTTCTCGTTTTA
GTAACGAAATAACTGTCCGATAATTAGAGTAGATTTATCCACAGCATCGG
AATCCCTAATTGACGAGATTATAATTCAGTCAATTCTTCACAATCGTTTA
ATTTCAAGTGCAAATAATATTgtttgatttttccaaaaataattcgAAAA
TAATGATGTGTAAatagatgtcttccttttgttttctttttctaaaaaaa
tgtcataaaataatttaatagaGAATATTTACACTTTTCTGTTCGTTTTT
AATTTATATacaatgattttaaaattttgtctgGACATAAATATATATAG
ATTTATTTCTTACTTTTAATCTACGTATAAATCTCTTTAAAATTGTCAGA
TCGATGAACTAGAAAAAGGTCGCTTAGCCCGGACATGGCAACAAGTAACA
GGGACAAGAAAATGAGGTCTGGGACGGAATAATGGTTATGGTTGTAGTTG
AGTGATGGTGCTATGAATACGAATAGGGCCGTTAAACAGACAAttcaaat
ttgagaaaacaTCAAAGTAACGACAAAGTAATCCCTATCCTCTTTCTAGA
GAGACAAATGCAGAAAGATTCTAAATAATACCTATATCTATGAATTATCC
CAAACAGGATAAAATTGAACAACTAAATAATATTCTACACTTCGTAAAAA
ATTGAATACcttttttctattaaaaattttggaaaaggaTATAAANATTC
TACACTTCGTAAAAAATTGAATACCTTTTTTCTAttaaacatttttggaa
aaggATATAAATGATGATAACAAGATGAAGGACTTTCTAAGGATGCATAT
TTCTTCCTACCATGGATATGGTGTCCTACAAAGAATGGAATAAAGAAGAA
ATGGTTAGAAATCAGCACACcaaaagaaacatttttcgagttctcggaat
tttttttcatagcc Run BLAST on NCBI transcript from alignment at sc0000295:25369..29247- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018272 ID=TCONS_00018272|Name=TCONS_00018272|organism=Clytia hemisphaerica|type=transcript|length=3879bp|location=Sequence derived from alignment at sc0000295:25369..29247- (Clytia hemisphaerica)
GAAAAATAAGAGAACATTTCTTCGTTTCTTTTGTTGTGATAATAAAAATG
AAGAAAAATAAAAAATAATATTGGAGAAGGGAGAAAAATAGAAGAAGAAC
GAAGAAAAAATAAAGATTCATAAAATTATAAAGAAGAACTTTAAAAGTAA
GTCTGAAATAAGAAATTTTTGTAGGCTTGAGCCTTTAATCTTTTTGGGTA
AATTATAGGGTCTAAAAAAACTTTAAGCAGCATATATAAATTTAATGTAT
GTAAATTCACGGATAAATTATTTTGGTCTTTGATCGATTAATTTGTTTAA
GGGGTTAATCAAGTTTTATACAATCAGAAGATTAAACGATTGAAATATTT
TGAGAAAAAGGGCGAAGTATAATCAAAGTTTGAAGGCACATATATCACAA
CTGTAGTAGTTTCTTACTTTCTTGAGTCCAAAGCTTTTTGGATTTCTAAA
ATCTTGAGAAATACAGGTATTTAGACAAATAAATAATAGGACAGAGCAGA
ACAGATAAGTTGAAAAGAAATACAACTGTTCGAAATTCGAAAATGGAAAA
GGTTATCACACGTTCCAACGTTGTTTTTTATTTTCAGGATCGGTTTGTAA
CCTTGATATCAACAATTACTGGTCATTAAGAAGACAAAAGAAACACGAGA
GCCATCTTCTGATTGAAGAAGATCTTCATACAAAACCTATGTCACGTGAA
CACACCAACCTCTTACGAGAAGCAACCGAGAAACGACGAAACATGTCGGT
CAAATGTCGTTCTTTTTGTCGGACATCATGCTGTCGCTTAAAGCCGGAAA
CCAATTTAGCATTGATGTTATGTTTGGTATTTTATTTGTACATTTGTCTG
GGTGGAGCATTGTTTTTGCTGTTGGAAGGACAAGCAGAAACACCAGATGG
TACAAACATCCATAAAGATCGTATGCAAGGATTAATGGTACGTTATTTGA
AGGTTTCTAGCATTAGTTTTACAGGTTTTTGATAAAATCAACAATTCAAG
GACATGAAGATTGGCTAAAACACCTTATAGGAAATTAGTCTCGACAATCT
ATGATTTGAAAAAGATCGTGGAAGCAGAAAATGACGTTTACATCGTATTT
TCCAAAGAAAAATTTTGTAAAGATAAATACATTCAAACACTTATGGACCA
ATCAAATATGCTTCTTGAGTCTCCATAAGAGTTTGTATCAGACAACCCAT
CAAAAAACCATCCATCTCCAACCAAACATTGTCCAAAGACCAACCAAAAT
GTTCCAATGTTTTCTACTTCTTATTTTAGGACAATTTAAAGATAGTATTG
GATCGAGACAACACGAAACAGATTACACATTATTGTGAGCAATCCACTGG
TTTCCAGATGAGGAAAAAACCAGCACATGAGAATCTATGGTCATTCTTAG
AGTCGACTGATTTTGCATACCAAGTGGTGACTGGACAAGGAACAAGTAAG
TCCATGCAAAAGATTTATCCAAAAATAATCTTGCACTTGCCATGAATATT
GTTTAATTATAATTCAGTAATGTAATAACGAATCAGTTTATTGAACGATT
CTCACTGGTACAGTGATAAAGGATGTTTTCTATCGTAAAAGTGTAATAGA
TGGGCAAGCATCTATTCATTGGAATCAATATCGAAGCCACATGCAATAGA
TTGGGCGTATGAACGTAATTCATTAAGTCAACTTTATTCATCTCGTAGTT
GAACGACCATTACTTTCGTTCTTCTTACAGAGTTAACAAAGAATTCATTC
AATATTTTACTTTCTTTTCTATTTCAGTTCAATCTACAAGAACCATTTTC
ACAACTGGTGGCAAGATCTCATACATCATTTTCCTTTTCCTTGGAATACC
TCTCACAGTATTGACCTTCAGAGCTACTGGGCAACGTTTAAACATAATGG
TTTATGCTTTCATTCGGTTTATTAACGTCAAAGTATTCAGTAGGCAACTA
ACAGCCAATGTCCACATAAAAGCCTTGATCTTAAACATTTTCATCTTCAT
AATCACTATTCTGATTGGGGCGAGCATGTATTGTGTCACACAAGGGTGGA
GTTATCTGGACTCACTCTTCTACACTATGAGCGTTTCATTTACCGTTAGT
AACAGCCAAGAAAATATAGTCAACCAAAACATTGCAATGAATTCGAATAA
GGATAAGGCGTACCGAATCCTATTCAATTTTTATACTTTTGTGGCTTATA
CAGTCTTGGCTTCGTTGACGTGGAGTGCACATCATTTTACAAGACATATG
AGATTTAAAGCACAGAATCGCCAGTTAAAGAATGGAGACGTACATTCGAC
TTGTCCATGGGTTGAAGTGACACGAAGTAAAACAGCTTCACCGAGCAAAA
GCACCAGAGAAAGAGAGACTGATCGAGAATCTGTTTGTTAACGTTATGAT
TGATGAAAAAGTGAATAAATGAGTGAACGAATTGAAAACTACAATTATCA
TCATTCTGTTAACCTTGGAGTGTGCAATGAGGTAAGAAGTAGCATACTCT
TTAGAGAGAAAATCAGTCCTTTCATCTCACATGCAGAGTAGCAGATTACA
CAAGAAAAATCACGTCAGAGAAATTTTGAAATAAAGATCAAGGTAAGAAA
ACATCGATACTGTTGATATTAAGAAGAATGGACAGATTTCAATGCACCCT
TGGTTAGCAGCAAGTACCAATTGAGATGTTTCAGGAACACATAAAATGAA
CAATCCAAGCCAAAAACACAGTATGGACTACATTTCTTCACCTAAAAATA
GAGAAAATTTTGAAAGGTTAACTACTCGTCACGTGTGTCAAGTTAAAAAA
ATTTGAAATAATTCTCCACTATTTGATTGATGATCGATTGACGAAAATAT
AATGCCGAAATGTTGTCCAGAGAGGAAAGAGGAAAGATTTTGATTGACTA
ATTCTTGCCGAAAATATGTTCTTTGTTTATAAGAATTAACTGAATACGTA
TTCGTTCTCGTTTTAGTAACGAAATAACTGTCCGATAATTAGAGTAGATT
TATCCACAGCATCGGAATCCCTAATTGACGAGATTATAATTCAGTCAATT
CTTCACAATCGTTTAATTTCAAGTGCAAATAATATTGTTTGATTTTTCCA
AAAATAATTCGAAAATAATGATGTGTAAATAGATGTCTTCCTTTTGTTTT
CTTTTTCTAAAAAAATGTCATAAAATAATTTAATAGAGAATATTTACACT
TTTCTGTTCGTTTTTAATTTATATACAATGATTTTAAAATTTTGTCTGGA
CATAAATATATATAGATTTATTTCTTACTTTTAATCTACGTATAAATCTC
TTTAAAATTGTCAGATCGATGAACTAGAAAAAGGTCGCTTAGCCCGGACA
TGGCAACAAGTAACAGGGACAAGAAAATGAGGTCTGGGACGGAATAATGG
TTATGGTTGTAGTTGAGTGATGGTGCTATGAATACGAATAGGGCCGTTAA
ACAGACAATTCAAATTTGAGAAAACATCAAAGTAACGACAAAGTAATCCC
TATCCTCTTTCTAGAGAGACAAATGCAGAAAGATTCTAAATAATACCTAT
ATCTATGAATTATCCCAAACAGGATAAAATTGAACAACTAAATAATATTC
TACACTTCGTAAAAAATTGAATACCTTTTTTCTATTAAAAATTTTGGAAA
AGGATATAAANATTCTACACTTCGTAAAAAATTGAATACCTTTTTTCTAT
TAAACATTTTTGGAAAAGGATATAAATGATGATAACAAGATGAAGGACTT
TCTAAGGATGCATATTTCTTCCTACCATGGATATGGTGTCCTACAAAGAA
TGGAATAAAGAAGAAATGGTTAGAAATCAGCACACCAAAAGAAACATTTT
TCGAGTTCTCGGAATTTTTTTTCATAGCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018272-exon-sc0000295-1575043694:29102..29247 | TCONS_00018272-exon-sc0000295-1575043694:29102..29247 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1575043694:28311..28660 | TCONS_00018272-exon-sc0000295-1575043694:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1575043694:27803..27968 | TCONS_00018272-exon-sc0000295-1575043694:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1575043694:25369..27470 | TCONS_00018272-exon-sc0000295-1575043694:25369..27470 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1510915933:29102..29247 | TCONS_00018272-exon-sc0000295-1510915933:29102..29247 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1510915933:28311..28660 | TCONS_00018272-exon-sc0000295-1510915933:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1510915933:27803..27968 | TCONS_00018272-exon-sc0000295-1510915933:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1510915933:25369..27470 | TCONS_00018272-exon-sc0000295-1510915933:25369..27470 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1491911889:29102..29247 | TCONS_00018272-exon-sc0000295-1491911889:29102..29247 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1491911889:28311..28660 | TCONS_00018272-exon-sc0000295-1491911889:28311..28660 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1491911889:27803..27968 | TCONS_00018272-exon-sc0000295-1491911889:27803..27968 | Clytia hemisphaerica | exon |
| TCONS_00018272-exon-sc0000295-1491911889:25369..27470 | TCONS_00018272-exon-sc0000295-1491911889:25369..27470 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:25369..29247 - |
Blast
The following BLAST results are available for this feature:
|
