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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018270 ID=TCONS_00018270|Name=TCONS_00018270|organism=Clytia hemisphaerica|type=transcript|length=2512bp
GTTGTCAGAGAGGAATAAAtactttttcaatcagtgatacTGACCTTTCT
TATTGGAATGTGTTTTGTCAGGAATCTTAAATATCTGATTCTTTTATTTA
AGTGAATTATAAAAATATGCTCCAATAAAGCAATTATGAAGCTACATCAC
TTAACCATCACATGTAATGATGCTCTAAAAGCAAAGATTAAGTTCACTTC
ACTGTATTCATTCAAAGCATATGGGTACTTGGTAGTCAACAAAAGTAAGG
ATATAATTGAAGTCTTGAGGCATGGagacatttttattttgttaaagcAA
TCCTCAGAGCAAATTGCAGACACTGTTGATGATGTTGCTTTTGTTGTTGA
AGATTTGGAAACAATCTGTCAAAATACTTTAAATAACGGAAGCATTGTAG
TCCAGTCACCAAGAACTGAATCATGTCAAACCTATTCTGGAGTGTGTAAA
CCATGTAAGAATTGTAAAAGTAATTTAACACCATGTTTGTACATCATCAG
TAAAGCCATTGTGAAATCACCAATTGGAAATTTACAACATACcattttaa
acaaaacaaattttcatggAGATTTTCTGCCTGGTTTTGTCTCATATGAA
GAAAGCCTTGTTGACCAGGAGAAGAATAACGAAATGTTTGATTGTATTGA
CCATGTTGCGTTAGCTGTGCCTTGTggtgaaacaatgaaacacatcaTGT
GGTATAAAGAATGCTTgcaattatttaatttttattgtaaCAGACTAGAA
AAAGATGATAGCCTTGTAATTCGTTCCAAGATGGGTCAAGGAATAAGACT
GTATACCTTAGTAGCTCATCCCTGCTCAGAGGCTGGCTTGATTACAGAAG
AACATGAAATTGGAAACGAaagattcaaatttgtattttgtgAATCATTA
GAATTAGAAGGAAAGGATCAGATTAATAGCTTTCTAAAGAAACACAATGG
ACCTGGTGTTCAGCATGTAGCCTTCAAATCATCTGCCATCGTGCAAGACA
CAAAAATCTGGCATCAGAACGGAGTCAAATTTTTATCACCACCAATAGAa
ttgacACTACCTTGAGTAAACTAGAGACACGTCAGAGTGGCCTCTCAAGC
TCAGTTCAAGAccttggaattcttatcgatGTAGAGAAGATAAGTAACAC
TGACGGCGACAAAGAAGAAGAAGGgtttttatACCAAGTGTTCACTTCAC
CAATATTACCATCAGAGACATTCTTTTTTGAACTCATTCAACGTGAAAAC
AGTCATGGTTTTGGTGCTGGTAATGTAGCTGCTTTATGGAATGCTGTTGA
AATGAGTAATATGAAGGGAATAAGATAGAAGCATACGAAATGATTTTGAA
TTTGTGAAAAACTTACAAAGTGAACTTCGTCAtaatttgtttgatttctt
ggACTTTGCAAACTGGATATTGTTTTGTTATCATTTGTAATATATCTATC
TTCGGACTACTTCtttcattaaaggttttgtttttaaataagagtgatat
caattttaatttacaagctttttggacctacctggaggtcctataaatta
acctttgttcgtccgtccgtccgtccgtctgtccgtccgtccgtctgtta
ccagcttttctcgagattggctcattagttttttttgatttttggcacaa
agatgcaaaatggcaatgcccaaaatgtgacggagcccgattttcgaaaa
aaaaaattttccggcttaaattgccggaaatatgccggaaaaaccggttt
tttgatattttctcgagatttcatcattagttttctcagattttttgcta
aaagatgcgtattaacaatgctcaaaacatgaccgggtccgatttttgag
aaaaaattttttctggctgaaaatgtcggaaatatgccggaaatcaccgt
ttttctgaattttcattagactttttcctcataattggttgttttttcat
tcaataacattattgatagcaatgcccaccatcaagcatgtttcaatttt
caataaaattgatttttgaagccggaactattaaaAAATCGCTGGAACAA
CCTATATTCGCCGGAAAGACAGTATTTCTTgaatttctcgagctgtactt
tatatatttttatgaaattttgcacactgatgcaaaatgacaatacctaa
aatgtgacggagcccgattttagaaaaacatttttttccggccgaaaatg
ccggaaaaaccggttttttgacattttctcgaattttcatccttagttat
ttctgattttttgcagaaagatccgtattcgcaatgctcaaaacatgacg
gagttcgattttttgagaaattttttttcccggccgaaaatgccggaaat
cgccgtttttgcagatttttgcaattttgcaaaaaattatattttctaac
GGATTGTTtccgtttttctccttattgctatctaactttcatcatcaggt
aggttgaaaaacgaatttttatctataagaatcactatatataagcatag
atcaatattatt Run BLAST on NCBI transcript from alignment at sc0000295:304081..307142+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018270 ID=TCONS_00018270|Name=TCONS_00018270|organism=Clytia hemisphaerica|type=transcript|length=3062bp|location=Sequence derived from alignment at sc0000295:304081..307142+ (Clytia hemisphaerica)
GTTGTCAGAGAGGAATAAAtactttttcaatcagtgatacTGACCTTTCT
TATTGGAATGTGTTTTGTCAGGAATCTTAAATATCTGATTCTTTTATTTA
AGTGAATTATAAAAATATGCTCCAATAAAGCAATTATGAAGCTACATCAC
TTAACCATCACATGTAATGATGCTCTAAAAGCAAAGATTAAGTTCACTTC
ACTGTATTCATTCAAAGCATATGGGTACTTGGTAGTCAACAAAAGTAAGG
ATATAATTGAAGTCTTGAGGCATGGagacatttttattttgttaaagcAA
TCCTCAGAGCAAATTGCAGACACTGTTGATGATGTTGCTTTTGTTGTTGA
AGATTTGGAAACAATCTGTCAAAATACTTTAAATAACGGAAGCATTGTAG
TCCAGTCACCAAGAACTGAATCATGTCAAACCTATTCTGGAGTGTGTAAA
CCATGTAAGAATTGTAAAAGTAATTTAACACCATGTTTGTACATCATCAG
TAAAGCCATTGTGAAATCACCAATTGGAAATTTACAACATACcattttaa
acaaaacaaattttcatggAGATTTTCTGCCTGGTTTTGTCTCATATGAA
GAAAGCCTTGTTGACCAGGAGAAGAATAACGAAATGTTTGATTGTATTGA
CCATGTTGCGTTAGCTGTGCCTTGTggtgaaacaatgaaacacatcaTGT
GGTATAAAGAATGCTTgcaattatttaatttttattgtaaCAGACTAGAA
AAAGATGATAGCCTTGTAATTCGTTCCAAGATGGGTCAAGGAATAAGACT
GTATACCTTAGTAGCTCATCCCTGCTCAGAGGCTGGCTTGATTACAGAAG
AACATGAAATTGGAAACGAaagattcaaatttgtattttgtgAATCATTA
GAATTAGAAGGTAAGTATTCTCTTCTGAATTTattaaaggaaagatactt
ttCAGGGGAAAGGAATAGCAGAGCATAGCGTGACACTGTCTTTTGGTTTG
TGAATGTCAAGAACAACTTATGTTTATTCGAAACAGCAGAGATTCcatct
gaaataaaaatttcacttACACAGCTTTTAATATAATTATATTACCATTC
TTTAGGAAAGGATCAGATTAATAGCTTTCTAAAGAAACACAATGGACCTG
GTGTTCAGCATGTAGCCTTCAAATCATCTGCCATCGTGCAAGACACAAAA
ATCTGGCATCAGAACGGAGTCAAATTTTTATCACCACCAATAGAGTACTA
CAACATAGTAATTCTTCGtttaaattgttatttttcattttgttttcttt
gatttgttcTGTTTTCCCAAAAGGGCTGTAATAACTAATTTAGTAATACT
TATTATATAATATCTATATCCTAatattttttcgtcaaaatcgatTTTAC
TATTTTAAATAATGTATTAATAATatctaaattttcagattgacACTACC
TTGAGTAAACTAGAGACACGTCAGAGTGGCCTCTCAAGCTCAGTTCAAGA
ccttggaattcttatcgatGTAGAGAAGATAAGTAACACTGACGGCGACA
AAGAAGAAGAAGGGTTTggatttgcttgtttttctcaTCATTCTCTAAAT
TGCcttgattttgaaaacttttttaaattttagtgcGTTTACACAGCGAT
TGGTACTACTTGTTTTTATAACTCATAAAAATATGTACATTatccaaaaa
tttctttcttttttacattttcaggtttttatACCAAGTGTTCACTTCAC
CAATATTACCATCAGAGACATTCTTTTTTGAACTCATTCAACGTGAAAAC
AGTCATGGTTTTGGTGCTGGTAATGTAGCTGCTTTATGGAATGCTGTTGA
AATGAGTAATATGAAGGGAATAAGATAGAAGCATACGAAATGATTTTGAA
TTTGTGAAAAACTTACAAAGTGAACTTCGTCAtaatttgtttgatttctt
ggACTTTGCAAACTGGATATTGTTTTGTTATCATTTGTAATATATCTATC
TTCGGACTACTTCtttcattaaaggttttgtttttaaataagagtgatat
caattttaatttacaagctttttggacctacctggaggtcctataaatta
acctttgttcgtccgtccgtccgtccgtctgtccgtccgtccgtctgtta
ccagcttttctcgagattggctcattagttttttttgatttttggcacaa
agatgcaaaatggcaatgcccaaaatgtgacggagcccgattttcgaaaa
aaaaaattttccggcttaaattgccggaaatatgccggaaaaaccggttt
tttgatattttctcgagatttcatcattagttttctcagattttttgcta
aaagatgcgtattaacaatgctcaaaacatgaccgggtccgatttttgag
aaaaaattttttctggctgaaaatgtcggaaatatgccggaaatcaccgt
ttttctgaattttcattagactttttcctcataattggttgttttttcat
tcaataacattattgatagcaatgcccaccatcaagcatgtttcaatttt
caataaaattgatttttgaagccggaactattaaaAAATCGCTGGAACAA
CCTATATTCGCCGGAAAGACAGTATTTCTTgaatttctcgagctgtactt
tatatatttttatgaaattttgcacactgatgcaaaatgacaatacctaa
aatgtgacggagcccgattttagaaaaacatttttttccggccgaaaatg
ccggaaaaaccggttttttgacattttctcgaattttcatccttagttat
ttctgattttttgcagaaagatccgtattcgcaatgctcaaaacatgacg
gagttcgattttttgagaaattttttttcccggccgaaaatgccggaaat
cgccgtttttgcagatttttgcaattttgcaaaaaattatattttctaac
GGATTGTTtccgtttttctccttattgctatctaactttcatcatcaggt
aggttgaaaaacgaatttttatctataagaatcactatatataagcatag
atcaatattatt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018270-exon-sc0000295-1491911889:304081..304990 | TCONS_00018270-exon-sc0000295-1491911889:304081..304990 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1510915933:304081..304990 | TCONS_00018270-exon-sc0000295-1510915933:304081..304990 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1575043694:304081..304990 | TCONS_00018270-exon-sc0000295-1575043694:304081..304990 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1491911889:305186..305324 | TCONS_00018270-exon-sc0000295-1491911889:305186..305324 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1510915933:305186..305324 | TCONS_00018270-exon-sc0000295-1510915933:305186..305324 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1575043694:305186..305324 | TCONS_00018270-exon-sc0000295-1575043694:305186..305324 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1491911889:305519..305643 | TCONS_00018270-exon-sc0000295-1491911889:305519..305643 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1510915933:305519..305643 | TCONS_00018270-exon-sc0000295-1510915933:305519..305643 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1575043694:305519..305643 | TCONS_00018270-exon-sc0000295-1575043694:305519..305643 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1491911889:305805..307142 | TCONS_00018270-exon-sc0000295-1491911889:305805..307142 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1510915933:305805..307142 | TCONS_00018270-exon-sc0000295-1510915933:305805..307142 | Clytia hemisphaerica | exon |
| TCONS_00018270-exon-sc0000295-1575043694:305805..307142 | TCONS_00018270-exon-sc0000295-1575043694:305805..307142 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000295 | supercontig | sc0000295:304081..307142 + |
Blast
BLAST of TCONS_00018270 vs. Swiss-Prot (Human)
Match: HPDL (4-hydroxyphenylpyruvate dioxygenase-like protein OS=Homo sapiens GN=HPDL PE=1 SV=1) HSP 1 Score: 82.4185 bits (202), Expect = 9.878e-27 Identity = 57/185 (30.81%), Postives = 81/185 (43.78%), Query Frame = 1
Query: 505 AIVKSPIGNLQHTILNKTNFHGDFLPGFVSYEESLVDQEKNNEMFDCIDHVALAVPCGETMKHIMWYKECLQLFNFYCNRLEKDDSLVIRSKMG---QGIRLYTLVAHPCSEAGLITEEHEIGNERFKFVFCESLE--LEGKDQINSFLKKHNGPGVQHVAFKSSAIVQDTKIWHQNGVKFLSPP 1044
A+V SP G L T+L + + G FLPGF V +DH+ LA G + + W+ +CL + + E D L + G G+RL L A P G+ V ESL +DQ+ FL +H GPG+QHV + IV+ T+ G +FL+PP
Sbjct: 119 AVVSSPAGILSLTLLERAGYRGPFLPGFRP-----VSSAPGPGWVSRVDHLTLACTPGSSPTLLRWFHDCLGFCHLPLSPGE-DPELGLEMTAGFGLGGLRLTALQAQP-------------GSIVPTLVLAESLPGATTRQDQVEQFLARHKGPGLQHVGLYTPNIVEATEGVATAGGQFLAPP 284 HSP 2 Score: 57.3806 bits (137), Expect = 9.878e-27 Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 3
Query: 1152 DGDKEEEGFLYQVFTSPILPSETFFFELIQRENSHGFGAGNVAALWNAVE 1301
DGDK + FL QVFT + +TFF ELIQR+ + GFG GN+ ALW +V+
Sbjct: 315 DGDKGK--FLLQVFTKSLFTEDTFFLELIQRQGATGFGQGNIRALWQSVQ 362
The following BLAST results are available for this feature:
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