TCONS_00018268 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018268
Unique NameTCONS_00018268
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1406

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018268 ID=TCONS_00018268|Name=TCONS_00018268|organism=Clytia hemisphaerica|type=transcript|length=1406bp
CGAAAAGTGCACACTTTGACTTGAGCAAAAACACATGATGTTGGGTAGAA
TATTTCGACTCTTGGCTTTTCTGTTGGTGATTTCTAGTTTAATTCTAGCG
GACGGACTTCAAATTGAAGACACAGAATGTAAAGAAATTCCAAACGGTCA
TTACTTTTGCAATGAAACCACCGGCCAAAAGCAATGTTATGAGAACTACT
TTGGAGTGAACTGTACAACATATTGCAAAGTTGAAGATGGAAGCAATTTC
ATCTGCAACAAAATTACTGGAGAAAAGGAGTGTTTTGCTGATTATTACGG
AATGAATTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCT
GCAACAGAATCACTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATG
AATTGTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAA
CAAAATCACGGGAGAGAAGGAATGTTTTGCCGATTATTACGGAGTGAACT
GTACAAGATACTGCAAAGTTAAAGATGGGAACAATTTCATCTGCAACAAA
ATCACGGGAGAGAAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTAC
AACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAATCA
CTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACA
TACTGCAATGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACTGG
AGAAAAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACT
GCAAAGTCAAAGATGGGAGCAATTTCATCTGCAACAAGATTACTGGTGAA
AAGGAATGTTTTGTCGATTATTACGGAGTGAACTGTACAACATACTGCAA
AGTTGAAGATGGGAGCAATTTCATCTGTAACAAGATTACCGGTGAAAAGG
AATGTTTTGTTGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTT
GAAGATGGGAGCAATTTCATCTGCAACTTGATTACTGGTGAAAAGGAATG
TTTTGTTGATTATTACGGAGTGAACTGTACAGCATACTGCAAAGTCAAAG
ATGGAAGCAATTTCATCTGCAACAAAATCACTGGTGAAAAGGAATGTTTT
GTTGATTACTACGGAATGAACTGTACAACATACTGCAAAGTTGAAGATGG
GAGCAATTTCATCTGCAACAAAATCACGGGAGAAAAGGAATGTTTTACTG
ACTATTATGGAATCAATTGCACATTAAATAAACGGAGACCTGCAAATAAT
GATGAAATGAGCGTGGCTGATTGGTTAACGAAAACTACCAATGGTATTGT
TTTGATTGCAGTTGTATCTTCTGTTTTCCTTATCATAATTATTGTCGCAT
TCATTG
Run BLAST on NCBI

transcript from alignment at sc0000295:244419..248384+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018268 ID=TCONS_00018268|Name=TCONS_00018268|organism=Clytia hemisphaerica|type=transcript|length=3966bp|location=Sequence derived from alignment at sc0000295:244419..248384+ (Clytia hemisphaerica)
CGAAAAGTGCACACTTTGACTTGAGCAAAAACACATGATGTTGGGTAGAA
TATTTCGACTCTTGGCTTTTCTGTTGGTGATTTCTAGTTTAATTCTAGCG
GTAAGGTATTTCACTTAAATATCAATATGTGCTTTTTGACTAGAAACATG
CAGAAAATCTAAACGAAGAAGTAGGAACGGTTGGGTTGATTTGCTctatt
aaaaatgaaagtgcAACTTTATCTTCTTTCATAGGACGGACTTCAAATTG
AAGACACAGAATGTAAAGAAATTCCAAACGGTCATTACTTTTGCAATGAA
ACCACCGGCCAAAAGCAATGTTATGAGAACTACTTTGGAGTGAACTGTAC
AACATATTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAATTA
CTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACA
TACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAGAATCACTGG
AGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACATACT
GCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAG
AAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAAGATACTGCAA
AGTTAAAGATGGGAACAATTTCATCTGCAACAAAATCACGGGAGAGAAGG
AATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTT
GAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAGTG
TTTTGCTGATTATTACGGAATGAATTGTACAACATACTGCAATGTTGAAG
ATGGGAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAATGTTTT
GCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGG
AAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGAT
TATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAA
TTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTAC
GGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCAT
CTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTG
AACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAA
CAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTGAACTGT
ACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAAC
CACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTGAACTGTACAACA
TACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAGAATCACTGG
AGAAAAGGAGTGTTTTGCCGATTATTACGGAATGAATTGTACAACATACT
GCAAAGTTGACGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAG
AAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAA
AGTTAAAGATGGGAACAATTTCATCTGCAACAAAATCACTGGAGAAAAGG
AGTGTTTTGCTGATTATTACGGAATGAATTGTACAACATACTGCAAAGTT
GAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAGTG
TTTTGCTGATTATTACGGAATGAATTGTACAACAAACTGCAAAGTTGAAG
ATGGAAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGC
CGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGAGGGGA
GCAATTTCATCTGCAACAAAATCACCGGAGAAAAGGAGTGTTTTGCTGAT
TATTACGGAATGAATTGTACAACATACTGCAAAGTTGAAGATGGAAGCAA
TTTCATCTGCAACAAAATCACTGGAGCAAAGGAGTGTTTTGCTGATTATT
ACGGAATGAATTGTACAACAAACTGCAAAGTTGAAGATGGAAGCAATTTC
ATCTGCAACAAAATCACTGGAGAAAAGGAATGTTTTGCCGATTATTACGG
AGTGAACTGTACAACATACTGCAAAGTCGAAGAAGGAAGCAATTTCATCT
GCAACAAGATTACTGGAGAAAAGGAATGTTTTGTTGATTACTACGGAATT
AATTGTACAACATACTGCAAAGTCAAAGATGGGAGCAATTTCATCTGCAA
CAAGATTACTGGTGAAAAGGAATGTTTTGTCGATTATTACGGAGTGAACT
GTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGTAACAAG
ATTACCGGTGAAAAGGAATGTTTTGTTGATTATTACGGAGTGAACTGTAC
AACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACTTGATTA
CTGGTGAAAAGGAATGTTTTGTTGATTATTACGGAGTGAACTGTACAGCA
TACTGCAAAGTCAAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGG
TGAAAAGGAATGTTTTGTTGATTACTACGGAATGAACTGTACAACATACT
GCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAA
AAGGAATGTTTTACTGACTATTATGGAATCAATTGCACATTAAATAAACG
GAGACCTGCAAATAATGGTAAATGTTTATTGCCTTCTTTCAACAATAGac
tttatcggagtttttgatttttcttaaaaagcgatgcattgtgggattgt
attgagtgtattacaatagaaatctctaaGGAATTCCTTGAGGGCATTCT
ATTGTAAATCACTCGAAACAATCTCACAAttcatcgcttttttagaaaaa
tcagggatatgttatagcgtagctggataacgcacatttgaaaaagcctt
gttctatctctgtccctgacattaaaatttgataagaaattaaacttttt
taattacaaattcgtgaaatttggatttctttttagccaatgattctgct
gctgcattgttcacgattaaaaactttgagttatcaagagggtctgtaaa
acatcggtgaatgacaatttaaaaaatgaaaaacattgttttcattagta
aagttataagaaatttcttctgtaagattataaatagctctttttcattt
gaaataccgcgctacaccgtgGGGCGCCTtgctttctaactgatattttc
agatagcaagtcggtatgtctgattatggaaaaaatttcaagtcaattga
aacaatatttgtcaaaatatttacaatccgaaatttttaaagagaaatca
tgaaagcttctcaaattcataacacacgctgataaaaatagatttcattt
acaaaagcgggaacatcatagcaaaatatatgcaaacgtactgtatgaat
actttgtctgcttcatttttcttataaaaacagaacactctaggggacag
agatggatttctattatgaacagtttacaatagaaaagacaaaggagcaa
tccgctaaggaattctcgtccttcatccagctacgctataacatatccct
ggaaaaatcaaaaactccgataaggtctattctagcaaaaattcattttc
ttgtTTGCAAGTTTTAACATTGACGACTtgtcttttgattttcttgtatT
TGTAATACCCTATTTGAATGGAATGTATTCTTTCTATTTAGATGAAATGA
GCGTGGCTGATTGGTTAACGAAAACAACCAATGGTATTGTTTTGATTGCN
TTTCTATTTAGATGAAATGAGCGTGGCTGATTGGTTAACGAAAACTACCA
ATGGTATTGTTTTGATTGCAGTTGTATCTTCTGTTTTCCTTATCATAATT
ATTGTCGCATTCATTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010264XLOC_010264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018268-exon-sc0000295-1491911889:244419..244518TCONS_00018268-exon-sc0000295-1491911889:244419..244518Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1510915933:244419..244518TCONS_00018268-exon-sc0000295-1510915933:244419..244518Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1575043694:244419..244518TCONS_00018268-exon-sc0000295-1575043694:244419..244518Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1491911889:244653..245347TCONS_00018268-exon-sc0000295-1491911889:244653..245347Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1510915933:244653..245347TCONS_00018268-exon-sc0000295-1510915933:244653..245347Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1575043694:244653..245347TCONS_00018268-exon-sc0000295-1575043694:244653..245347Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1491911889:246680..247185TCONS_00018268-exon-sc0000295-1491911889:246680..247185Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1510915933:246680..247185TCONS_00018268-exon-sc0000295-1510915933:246680..247185Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1575043694:246680..247185TCONS_00018268-exon-sc0000295-1575043694:246680..247185Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1491911889:248280..248384TCONS_00018268-exon-sc0000295-1491911889:248280..248384Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1510915933:248280..248384TCONS_00018268-exon-sc0000295-1510915933:248280..248384Clytia hemisphaericaexon
TCONS_00018268-exon-sc0000295-1575043694:248280..248384TCONS_00018268-exon-sc0000295-1575043694:248280..248384Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:244419..248384 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.139304	0.0122546	1.40344	0.788645	2.07109	2.71681	1.45426	3.77916	6.88012	4.33133	9.53517	8.77972	5.62337	7.43963	6.29243	4.64009	10.9474	11.0353	3.26312	4.36801	4.63067	3.34707	1.03591	1.09454	14.1088	12.3165
Blast
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BLAST of TCONS_00018268 vs. Swiss-Prot (Human)
Match: MEG10 (Multiple epidermal growth factor-like domains protein 10 OS=Homo sapiens GN=MEGF10 PE=1 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 5.564e-22
Identity = 104/468 (22.22%), Postives = 174/468 (37.18%), Query Frame = 2 
Query:  155 FCNETTGQKQCYENYFGVNCTTYCKVEDGSNFICNKITGE-------------KECFADYYGMNCTTYCKVEDGSNFICNRITGEKECFADYYGMNCTTYCKVEDGSNFICNKITGEKECFADYYGVNCTRYCKVKDGNNFICNKITGEKECFADYYGVNCTTYCKVED---GSNFICNKITG---------------------EKECFADYYGMNCTTYCNVEDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVKDGS-----NFICNKITG------EKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVED-----------GSNFICNLITGEKECFVDYYGVNCTAYCKVKD-GSNFI----------CNKITGE-------------KECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 1270
            F  E    + C E  +G+ C   C     +   C+ ++GE             + C   +YG  C   C  ++G++  C+ +TG+  C   + G++C+T C +                     YG+NC+  C  K  N+ +C+ + G   C A ++GV+C+  C       G N  C  + G                     E  C    YG+NC   C+        C+  TG   C   +             +G NC+  C  K+G+     + IC    G      ++ C   +YG  C+  C     S+  C+ ITG  +C   + G  C   C                +N  CN I    +C+  + G +C+  C     G N I          C+   GE             + C + +YG +C   C+ ++G++  C+ I+G+  C T + G +C
Sbjct:  345 FAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPL-------------------GTYGINCSSRCGCK--NDAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHCDSVCAEGRWGPNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITGLCDCLPGFTGALCNEVCPSGRFGKNCAGICTCTNNGTCNPIDRSCQCYPGWIGSDCSQPCPPAHWGPNCIHTCNCHNGAFCSAYDGECKCTPGWTGLYCTQRCPLGFYGKDCALICQCQNGAD--CDHISGQCTCRTGFMGRHC 785

HSP 2 Score: 98.5969 bits (244), Expect = 9.498e-22
Identity = 102/465 (21.94%), Postives = 178/465 (38.28%), Query Frame = 2 
Query:  185 CYENYFGVNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNRITGEKECFADY-------------YGMNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGVNCTRYCKVKDGNNFICNKITGEKECFADY-------------YGVNCTTYCKVEDGSNFICNKITG--------------EKECFADYYGMNCTTYCNVEDGSNFICNKITGE-------------KECFADYYGVNCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNLITGEKECFVDYYGVNCTAYCKVKD---GSNFICNKITG---------------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINC 1270
            C  +++G +CT+ C+ ++G+  +CN ITG   C A +             YG +C   C+ ++G+   C+ +TGE  C   Y             +G  C   C  ++G   +C+ +TGE  C + +             +G NC++ C+  +G    C+  TG+  C   Y             YGV C   C+  +G    C  ++G               + C    YG+ C   C     +   C+ ++GE             + C   +YG  C   C  ++G++  C+ +TG+  C   + G++C+T C                    +  YG+NC++ C  ++  + +C+ + G   C   ++GV+C+  C       G N  C  + G                     E  C    YG+NC   C         C+  TG   C   + G++C
Sbjct:  139 CDGDHWGPHCTSRCQCKNGA--LCNPITGACHCAAGFRGWRCEDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGECSCPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCP-------------------LGTYGINCSSRCGCKN--DAVCSPVDGSCTCKAGWHGVDCSIRCPSGTWGFGCNLTCQCLNGGACNTLDGTCTCAPGWRGEKCELPCQDGTYGLNCAERCDCSHADG--CHPTTGHCRCLPGWSGVHC 568

HSP 3 Score: 84.3445 bits (207), Expect = 4.325e-17
Identity = 81/362 (22.38%), Postives = 144/362 (39.78%), Query Frame = 2 
Query:  464 EKECFADYYGVNCTRYCKVKDGNNFICNKITGEKECFADY-------------YGVNCTTYCKVEDGSNFICNKITGEKECFADY-------------YGMNCTTYCNVEDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVKDGSNFICNKITG-------------EKECFVDYYGVNCTTYCKVEDGSNFICNKITG--------------EKECFVDYYGVNCTTYCKVEDGSNFICNLITGE-------------KECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKVED-----------GSNFICNKITGEKECFTDYYGINCTLN 1279
               C  D++G +CT  C+ K+G   +CN ITG   C A +             YG +C   C+ ++G+   C+ +TGE  C   Y             +G  C   C  ++G   +C+ +TGE  C + +             +G NC+  C+  +G    C+  TG             + EC V  YGV C   C+  +G    C  ++G               + C    YG+ C   C     +   C+ ++GE             + C   +YG  C   C  ++G++  C+ +TG+  C   + G++C+T C +              ++ +C+ + G   C   ++G++C++ 
Sbjct:  136 SSACDGDHWGPHCTSRCQCKNG--ALCNPITGACHCAAGFRGWRCEDRCEQGTYGNDCHQRCQCQNGA--TCDHVTGECRCPPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGG--VCHHVTGECSCPSGWMGTVCGQPCPEGRFGKNCSQECQCHNGG--TCDAATGQCHCSPGYTGERCQDECPVGTYGVLCAETCQCVNGGK--CYHVSGACLCEAGFAGERCEARLCPEGLYGIKCDKRCPCHLENTHSCHPMSGECACKPGWSGLYCNETCSPGFYGEACQQICSCQNGAD--CDSVTGKCTCAPGFKGIDCSTPCPLGTYGINCSSRCGCKNDAVCSPVDGSCTCKAGWHGVDCSIR 485
The following BLAST results are available for this feature:
BLAST of TCONS_00018268 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEG105.564e-2222.22Multiple epidermal growth factor-like domains prot... [more]
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