TCONS_00018267 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018267
Unique NameTCONS_00018267
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2667

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018267 ID=TCONS_00018267|Name=TCONS_00018267|organism=Clytia hemisphaerica|type=transcript|length=2667bp
CGAAAAGTGCACACTTTGACTTGAGCAAAAACACATGATGTTGGGTAGAA
TATTTCGACTCTTGGCTTTTCTGTTGGTGATTTCTAGTTTAATTCTAGCG
GACGGACTTCAAATTGAAGACACAGAATGTAAAGAAATTCCAAACGGTCA
TTACTTTTGCAATGAAACCACCGGCCAAAAGCAATGTTATGAGAACTACT
TTGGAGTGAACTGTACAACATATTGCAAAGTTGAAGATGGAAGCAATTTC
ATCTGCAACAAAATTACTGGAGAAAAGGAGTGTTTTGCTGATTATTACGG
AATGAATTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCT
GCAACAGAATCACTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATG
AATTGTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAA
CAAAATCACGGGAGAGAAGGAATGTTTTGCCGATTATTACGGAGTGAACT
GTACAAGATACTGCAAAGTTAAAGATGGGAACAATTTCATCTGCAACAAA
ATCACGGGAGAGAAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTAC
AACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAATCA
CTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACA
TACTGCAATGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACTGG
AGAAAAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACT
GCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAACCACTGGAGAA
AAGGATGTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAG
TTGAAGATGGAAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGAT
GTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAG
ATGGAAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGC
CGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAA
GCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTA
TTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATT
TCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTACGG
AGTGAACTGTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCT
GCAACAGAATCACTGGAGAAAAGGAGTGTTTTGCCGATTATTACGGAATG
AATTGTACAACATACTGCAAAGTTGACGATGGGAGCAATTTCATCTGCAA
CAAAATCACGGGAGAGAAGGAATGTTTTGCCGATTATTACGGAGTGAACT
GTACAACATACTGCAAAGTTAAAGATGGGAACAATTTCATCTGCAACAAA
ATCACTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTAC
AACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAATCA
CTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACA
AACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAACCACTGG
AGAAAAGGATGTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGC
AAAGTTGAAGAGGGGAGCAATTTCATCTGCAACAAAATCACCGGAGAAAA
GGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACATACTGCAAAG
TTGAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGCAAAGGAG
TGTTTTGCTGATTATTACGGAATGAATTGTACAACAAACTGCAAAGTTGA
AGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAATGTT
TTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTCGAAGAA
GGAAGCAATTTCATCTGCAACAAGATTACTGGAGAAAAGGAATGTTTTGT
TGATTACTACGGAATTAATTGTACAACATACTGCAAAGTCAAAGATGGGA
GCAATTTCATCTGCAACAAGATTACTGGTGAAAAGGAATGTTTTGTCGAT
TATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGGAGCAA
TTTCATCTGTAACAAGATTACCGGTGAAAAGGAATGTTTTGTTGATTATT
ACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTC
ATCTGCAACTTGATTACTGGTGAAAAGGAATGTTTTGTTGATTATTACGG
AGTGAACTGTACAGCATACTGCAAAGTCAAAGATGGAAGCAATTTCATCT
GCAACAAAATCACTGGTGAAAAGGAATGTTTTGTTGATTACTACGGAATG
AACTGTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAA
CAAAATCACGGGAGAAAAGGAATGTTTTACTGACTATTATGGAATCAATT
GCACATTAAATAAACGGAGACCTGCAAATAATGATGAAATGAGCGTGGCT
GATTGGTTAACGAAAAC
Run BLAST on NCBI

transcript from alignment at sc0000295:244419..248243+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018267 ID=TCONS_00018267|Name=TCONS_00018267|organism=Clytia hemisphaerica|type=transcript|length=3825bp|location=Sequence derived from alignment at sc0000295:244419..248243+ (Clytia hemisphaerica)
CGAAAAGTGCACACTTTGACTTGAGCAAAAACACATGATGTTGGGTAGAA
TATTTCGACTCTTGGCTTTTCTGTTGGTGATTTCTAGTTTAATTCTAGCG
GTAAGGTATTTCACTTAAATATCAATATGTGCTTTTTGACTAGAAACATG
CAGAAAATCTAAACGAAGAAGTAGGAACGGTTGGGTTGATTTGCTctatt
aaaaatgaaagtgcAACTTTATCTTCTTTCATAGGACGGACTTCAAATTG
AAGACACAGAATGTAAAGAAATTCCAAACGGTCATTACTTTTGCAATGAA
ACCACCGGCCAAAAGCAATGTTATGAGAACTACTTTGGAGTGAACTGTAC
AACATATTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAATTA
CTGGAGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACA
TACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAGAATCACTGG
AGAAAAGGAGTGTTTTGCTGATTATTACGGAATGAATTGTACAACATACT
GCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAG
AAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAAGATACTGCAA
AGTTAAAGATGGGAACAATTTCATCTGCAACAAAATCACGGGAGAGAAGG
AATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTT
GAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAGTG
TTTTGCTGATTATTACGGAATGAATTGTACAACATACTGCAATGTTGAAG
ATGGGAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAATGTTTT
GCCGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGG
AAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGAT
TATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAA
TTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTAC
GGAGTGAACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCAT
CTGCAACAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTG
AACTGTACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAA
CAAAACCACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTGAACTGT
ACAACATACTGCAAAGTTGAAGATGGAAGCAATTTCATCTGCAACAAAAC
CACTGGAGAAAAGGATGTTTGCCGATTATTACGGAGTGAACTGTACAACA
TACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAGAATCACTGG
AGAAAAGGAGTGTTTTGCCGATTATTACGGAATGAATTGTACAACATACT
GCAAAGTTGACGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAG
AAGGAATGTTTTGCCGATTATTACGGAGTGAACTGTACAACATACTGCAA
AGTTAAAGATGGGAACAATTTCATCTGCAACAAAATCACTGGAGAAAAGG
AGTGTTTTGCTGATTATTACGGAATGAATTGTACAACATACTGCAAAGTT
GAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGGAGAAAAGGAGTG
TTTTGCTGATTATTACGGAATGAATTGTACAACAAACTGCAAAGTTGAAG
ATGGAAGCAATTTCATCTGCAACAAAACCACTGGAGAAAAGGATGTTTGC
CGATTATTACGGAGTGAACTGTACAACATACTGCAAAGTTGAAGAGGGGA
GCAATTTCATCTGCAACAAAATCACCGGAGAAAAGGAGTGTTTTGCTGAT
TATTACGGAATGAATTGTACAACATACTGCAAAGTTGAAGATGGAAGCAA
TTTCATCTGCAACAAAATCACTGGAGCAAAGGAGTGTTTTGCTGATTATT
ACGGAATGAATTGTACAACAAACTGCAAAGTTGAAGATGGAAGCAATTTC
ATCTGCAACAAAATCACTGGAGAAAAGGAATGTTTTGCCGATTATTACGG
AGTGAACTGTACAACATACTGCAAAGTCGAAGAAGGAAGCAATTTCATCT
GCAACAAGATTACTGGAGAAAAGGAATGTTTTGTTGATTACTACGGAATT
AATTGTACAACATACTGCAAAGTCAAAGATGGGAGCAATTTCATCTGCAA
CAAGATTACTGGTGAAAAGGAATGTTTTGTCGATTATTACGGAGTGAACT
GTACAACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGTAACAAG
ATTACCGGTGAAAAGGAATGTTTTGTTGATTATTACGGAGTGAACTGTAC
AACATACTGCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACTTGATTA
CTGGTGAAAAGGAATGTTTTGTTGATTATTACGGAGTGAACTGTACAGCA
TACTGCAAAGTCAAAGATGGAAGCAATTTCATCTGCAACAAAATCACTGG
TGAAAAGGAATGTTTTGTTGATTACTACGGAATGAACTGTACAACATACT
GCAAAGTTGAAGATGGGAGCAATTTCATCTGCAACAAAATCACGGGAGAA
AAGGAATGTTTTACTGACTATTATGGAATCAATTGCACATTAAATAAACG
GAGACCTGCAAATAATGGTAAATGTTTATTGCCTTCTTTCAACAATAGac
tttatcggagtttttgatttttcttaaaaagcgatgcattgtgggattgt
attgagtgtattacaatagaaatctctaaGGAATTCCTTGAGGGCATTCT
ATTGTAAATCACTCGAAACAATCTCACAAttcatcgcttttttagaaaaa
tcagggatatgttatagcgtagctggataacgcacatttgaaaaagcctt
gttctatctctgtccctgacattaaaatttgataagaaattaaacttttt
taattacaaattcgtgaaatttggatttctttttagccaatgattctgct
gctgcattgttcacgattaaaaactttgagttatcaagagggtctgtaaa
acatcggtgaatgacaatttaaaaaatgaaaaacattgttttcattagta
aagttataagaaatttcttctgtaagattataaatagctctttttcattt
gaaataccgcgctacaccgtgGGGCGCCTtgctttctaactgatattttc
agatagcaagtcggtatgtctgattatggaaaaaatttcaagtcaattga
aacaatatttgtcaaaatatttacaatccgaaatttttaaagagaaatca
tgaaagcttctcaaattcataacacacgctgataaaaatagatttcattt
acaaaagcgggaacatcatagcaaaatatatgcaaacgtactgtatgaat
actttgtctgcttcatttttcttataaaaacagaacactctaggggacag
agatggatttctattatgaacagtttacaatagaaaagacaaaggagcaa
tccgctaaggaattctcgtccttcatccagctacgctataacatatccct
ggaaaaatcaaaaactccgataaggtctattctagcaaaaattcattttc
ttgtTTGCAAGTTTTAACATTGACGACTtgtcttttgattttcttgtatT
TGTAATACCCTATTTGAATGGAATGTATTCTTTCTATTTAGATGAAATGA
GCGTGGCTGATTGGTTAACGAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010264XLOC_010264Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018267-exon-sc0000295-1491911889:244419..244518TCONS_00018267-exon-sc0000295-1491911889:244419..244518Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1510915933:244419..244518TCONS_00018267-exon-sc0000295-1510915933:244419..244518Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1575043694:244419..244518TCONS_00018267-exon-sc0000295-1575043694:244419..244518Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1491911889:244653..247185TCONS_00018267-exon-sc0000295-1491911889:244653..247185Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1510915933:244653..247185TCONS_00018267-exon-sc0000295-1510915933:244653..247185Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1575043694:244653..247185TCONS_00018267-exon-sc0000295-1575043694:244653..247185Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1491911889:248210..248243TCONS_00018267-exon-sc0000295-1491911889:248210..248243Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1510915933:248210..248243TCONS_00018267-exon-sc0000295-1510915933:248210..248243Clytia hemisphaericaexon
TCONS_00018267-exon-sc0000295-1575043694:248210..248243TCONS_00018267-exon-sc0000295-1575043694:248210..248243Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000295supercontigsc0000295:244419..248243 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.0192427	0	0	0.0998505	0	0.132503	0.216717	0.319785	0.157849	0.872195	0.0794736	0.747496	0.395023	0.40589	0	0	0	0	0	0.584826	0	0	0	0
Blast
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BLAST of TCONS_00018267 vs. Swiss-Prot (Human)
Match: MEG11 (Multiple epidermal growth factor-like domains protein 11 OS=Homo sapiens GN=MEGF11 PE=2 SV=3)

HSP 1 Score: 74.7146 bits (182), Expect = 1.122e-24
Identity = 85/394 (21.57%), Postives = 141/394 (35.79%), Query Frame = 2 
Query: 1715 ADYYGVNCTTYCKVEEGSNFICNKITGEKECFADYYGMNCTTYCKVED-----------GSNFICNKITGAKECFADY-------------YGMNCTTNCKVEDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVEEGSNFICNKITG-------------EKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVD-------------YYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCK---------------------VEDGSNFICNLITG---EKECFVDYYGVNCTAYCKVKDGSNFICNKITGEKECFVDYYGMNCTTYCKV-----------EDGSNFICNKITGEKECFTDYYGINC 2602
            A  YG NC++ C    G    C+ + G   C   + G++CT  C                +   C+ I G+  C   +             +G+NC+ +C         C+ +TG   C A +             +G NC+  C  E G +  C+   G             ++ C   +YG  C   C +   S+  C+ I+G  EC                Y+G +C   C   +  N  C+ I G  +CF  + G +C+  C                       EDG+       TG    + C   ++G +C   C+ ++G++  C+ I+G+  C   + G +C   C             E  +N  C+ +TG   C   + GI C
Sbjct:  439 AGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTLPCPSGTWGLNCNESCTCANGAACSPIDGSCSCTPGWLGDTCELPCPDGTFGLNCSEHCDCSHADG--CDPVTGHCCCLAGWTGIRCDSTCPPGRWGPNCSVSCSCENGGS--CSPEDGSCECAPGFRGPLCQRICPPGFYGHGCAQPCPLCVHSSRPCHHISGICECLPGFSGALCNQVCAGGYFGQDCAQLCSCAN--NGTCSPIDGSCQCFPGWIGKDCSQACPPGFWGPACFHACSCHNGASCSAEDGACHCTPGWTGLFCTQRCPAAFFGKDCGRVCQCQNGAS--CDHISGKCTCRTGFTGQHCEQRCAPGTFGYGCQQLCECMNNSTCDHVTGTCYCSPGFKGIRC 822

HSP 2 Score: 58.5362 bits (140), Expect = 1.122e-24
Identity = 68/294 (23.13%), Postives = 106/294 (36.05%), Query Frame = 1 
Query:  955 ADYYGVNCTTYCKVEDGSNFICNKTTGEKDVCRLLRSELYNILQS*RWKQFHLQQNHWRKGC-LPIITE*TVQHTAKLKMEAISSATKP------LEKRMFADYYGVNCTTYCKVEDGSNFICNRITGE-------------KECFADYYGMNCTTYCKVDDGSNFICNKITGEKECFADY-------------YGVNCTTYCKVKDGNNFICNKITGEKECFADY--------------YGMNCTTYCKVEDGSNFICNKITGEKECFADYYGMNCTTNCKV---EDGSNFIC 1686
            +D++G +C+  C+ ++G+  +CN  TG        R          R ++      H  KGC LP       +H A     A      P       E+      +G +C   C  ++G    C+ ITGE             + C    +G NC+  C    G    C+ +TG+  C A Y             +G  C+ +C   +G    C+  TG  EC   Y              +G  CT  C  +  +   C+ +TG   C   + G +C  +C V    DG    C
Sbjct:  135 SDHWGPHCSNRCQCQNGA--LCNPITGACVCAAGFRGW--------RCEELCAPGTH-GKGCQLPC----QCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGG--TCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPC 407

HSP 3 Score: 88.9669 bits (219), Expect = 7.030e-18
Identity = 87/374 (23.26%), Postives = 135/374 (36.10%), Query Frame = 2 
Query: 1715 ADYYGVNCTTYCKVEEGSNFICNKITGEKECFADYYGMNCTTYCKV---EDGSNFICNKITGA---------------------KECFADYYGMNCTTNCKVEDGSNFICNKITGE-------------KECFADYYGVNCTTYCKVEEGSNFICNKITG-------------EKECFVDYYGINCTTYCKVKDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNKITGEKECFVDYYGVNCTTYCKVEDGSNFICNLITGE-------------KECFVDYYGVNCTAYCKVKDGSNFICNKITG-------------EKECFVDYYGMNCTTYCKVEDGSNFICNKITGEKECFTDYYGINCTL 2608
            +D++G +C+  C+ + G+  +CN ITG   C A + G  C   C       G    C    GA                     + C    +G +C   C  ++G    C+ ITGE             + C    +G NC+  C    G    C+ +TG             ++EC    +G  C+ +C   +G    C+  TG  EC   Y G  C                   E+ C    +G  CT  C  +  +   C+ +TG              + C V YYG  C   C  ++G++  C+ ITG                C    YG NC++ C   +G    C+ + G   C   + G++CTL
Sbjct:  135 SDHWGPHCSNRCQCQNGA--LCNPITGACVCAAGFRGWRCEELCAPGTHGKGCQLPCQCRHGASCDPRAGECLCAPGYTGVYCEELCPPGSHGAHCELRCPCQNGG--TCHHITGECACPPGWTGAVCAQPCPPGTFGQNCSQDCPCHHGGQ--CDHVTGQCHCTAGYMGDRCQEECPFGSFGFQCSQHCDCHNGGQ--CSPTTGACECEPGYKGPRCQ------------------ERLCPEGLHGPGCTLPCPCDADNTISCHPVTGACTCQPGWSGHHCNESCPVGYYGDGCQLPCTCQNGAD--CHSITGGCTCAPGFMGEVCAVSCAAGTYGPNCSSICSCNNGG--TCSPVDGSCTCKEGWQGLDCTL 478
The following BLAST results are available for this feature:
BLAST of TCONS_00018267 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MEG111.122e-2421.57Multiple epidermal growth factor-like domains prot... [more]
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