|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00018239 ID=TCONS_00018239|Name=TCONS_00018239|organism=Clytia hemisphaerica|type=transcript|length=1163bp
ATTTTACTTCTTAAGGATCTCGTTATTCGCACACAATTGTGACATACATA
TTGATTATTATACGTGTTAGCGAATATTTGCAGTTGGTAAAGTggtaatt
gtgtgcactcgtaATGTACCATACGTTGGCAGCTACGGCATTTGAGTCGA
TTTTGATCTTCATCATCAATACACGTAATTGGTGGGTCTTGGGTGTTTTT
GTCGcgatttttgttcatatttagcGAATTTCGATGCTTCTTTGAGTTTC
CACCAGTTTTTTGAAAGCGATGCAGAACACGGAAGGGTTCGATTTTTCTA
TAgtgagtctctctaagggttaggTTTTTCTATAGTGAGTCTTTCTAAGG
GTTAGGTTTTTCCATAgtgagtctctctaagggttataGGTTTTTCTATA
gtgagtctctctaagggttataGGTTTTTCTATAGTGAGTCTGTCTAAGG
GTTAGGTTTTTCTATAGTGAGTCTGTCTAAGGGTTAGGTTCTTCTATAGT
GAGTCTGTCTAAGGGTTAGGTTTTTCTATAGTGAGTCTGTCTAAGGGTTA
GGTTTTTCTATAgtgagtctctctaagggttataGGTTTTTCTATAGTGA
GTCTGTCTAAGGGTTAGGCTTTTCTAAAgtgagtctctctaagggttagg
TTTTTCTAAAGTCTAAGGATTAGgttcatagatttataaagcccgaaggg
ctagatgtcggggtttaagccatcacaggcaaaaaaattgaatatcggaa
aaatattgttgctattgttctTGAAAACCTGCCAAGCTTCTGATTTATCA
AGCgttgaaattatattgtaatgtcacgtgacttaggtaggattttctAC
CTAACCTCGAcacacttttcaataaaagcactCTATTtaacccttcgggc
ttttatAAGTCTATGGTTAGGTTCTTCTATAgtgagtctctctaagggtt
aggTTTTTCTAAAgtgagtctctctaagggttataGGTTTTTCTATAGTG
AGTTTGTCTAAGGGTTAGGTTTTCTATAgtgagtctctctaagggttata
GGTTTTTCTATAGTGAGTTTGTCTAAGGGTTAGGTTTTTCTATAGTGAGT
TTGTCTAAGGGTTAGGTTTTTCTATAGTGAGTCTGTCTAAGGGTTAGGTT
TTTCTATAGTGAG Run BLAST on NCBI transcript from alignment at sc0000291:108471..109633 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00018239 ID=TCONS_00018239|Name=TCONS_00018239|organism=Clytia hemisphaerica|type=transcript|length=1163bp|location=Sequence derived from alignment at sc0000291:108471..109633 (Clytia hemisphaerica)
CTCACTATAGAAAAACCTAACCCTTAGACAGACTCACTATAGAAAAACCT
AACCCTTAGACAAACTCACTATAGAAAAACCTAACCCTTAGACAAACTCA
CTATAGAAAAACCtataacccttagagagactcacTATAGAAAACCTAAC
CCTTAGACAAACTCACTATAGAAAAACCtataacccttagagagactcac
TTTAGAAAAAcctaacccttagagagactcacTATAGAAGAACCTAACCA
TAGACTTataaaagcccgaagggttaAATAGagtgcttttattgaaaagt
gtgTCGAGGTTAGGTagaaaatcctacctaagtcacgtgacattacaata
taatttcaacGCTTGATAAATCAGAAGCTTGGCAGGTTTTCAagaacaat
agcaacaatatttttccgatattcaatttttttgcctgtgatggcttaaa
ccccgacatctagcccttcgggctttataaatctatgaacCTAATCCTTA
GACTTTAGAAAAAcctaacccttagagagactcacTTTAGAAAAGCCTAA
CCCTTAGACAGACTCACTATAGAAAAACCtataacccttagagagactca
cTATAGAAAAACCTAACCCTTAGACAGACTCACTATAGAAAAACCTAACC
CTTAGACAGACTCACTATAGAAGAACCTAACCCTTAGACAGACTCACTAT
AGAAAAACCTAACCCTTAGACAGACTCACTATAGAAAAACCtataaccct
tagagagactcacTATAGAAAAACCtataacccttagagagactcacTAT
GGAAAAACCTAACCCTTAGAAAGACTCACTATAGAAAAAcctaaccctta
gagagactcacTATAGAAAAATCGAACCCTTCCGTGTTCTGCATCGCTTT
CAAAAAACTGGTGGAAACTCAAAGAAGCATCGAAATTCgctaaatatgaa
caaaaatcgCGACAAAAACACCCAAGACCCACCAATTACGTGTATTGATG
ATGAAGATCAAAATCGACTCAAATGCCGTAGCTGCCAACGTATGGTACAT
tacgagtgcacacaattaccACTTTACCAACTGCAAATATTCGCTAACAC
GTATAATAATCAATATGTATGTCACAATTGTGTGCGAATAACGAGATCCT
TAAGAAGTAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00018239-exon-sc0000291-1491911889:108471..109633 | TCONS_00018239-exon-sc0000291-1491911889:108471..109633 | Clytia hemisphaerica | exon |
| TCONS_00018239-exon-sc0000291-1510915933:108471..109633 | TCONS_00018239-exon-sc0000291-1510915933:108471..109633 | Clytia hemisphaerica | exon |
| TCONS_00018239-exon-sc0000291-1575043694:108471..109633 | TCONS_00018239-exon-sc0000291-1575043694:108471..109633 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000291 | supercontig | sc0000291:108471..109633 . |
Blast
The following BLAST results are available for this feature:
|
